Wall clock time and date at job start Tue Mar 31 2020 15:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.53701 * 2 1 4 4 C 1.52997 * 117.50278 * 125.79159 * 3 2 1 5 5 C 1.52998 * 117.50335 * 57.16525 * 3 2 1 6 6 N 1.47313 * 110.72562 * 122.91648 * 2 1 3 7 7 C 1.34533 * 106.61690 * 118.36688 * 6 2 1 8 8 O 1.21539 * 123.76958 * 180.20921 * 7 6 2 9 9 N 1.33791 * 112.45687 * 0.38125 * 7 6 2 10 10 C 1.46496 * 124.17911 * 179.86147 * 9 7 6 11 11 H 1.08998 * 109.47434 * 179.46105 * 10 9 7 12 12 C 1.52996 * 109.47350 * 299.46615 * 10 9 7 13 13 C 1.50707 * 109.47053 * 294.99849 * 12 10 9 14 14 H 1.07997 * 119.99394 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00187 * 179.97438 * 13 12 10 16 16 N 1.31520 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46961 * 60.00396 * 17 15 13 19 19 H 1.48504 * 109.46834 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47484 * 300.00243 * 17 15 13 21 21 C 1.50703 * 109.46888 * 59.46096 * 10 9 7 22 22 C 1.38238 * 119.99988 * 31.64026 * 21 10 9 23 23 C 1.38237 * 119.99892 * 179.97438 * 22 21 10 24 24 C 1.38231 * 120.00300 * 0.02562 * 23 22 21 25 25 C 1.38240 * 120.00026 * 0.26068 * 24 23 22 26 26 C 1.38239 * 119.99691 * 359.48122 * 25 24 23 27 27 C 1.34770 * 111.64578 * 359.59695 * 9 7 6 28 28 O 1.21231 * 127.16162 * 180.19430 * 27 9 7 29 29 H 1.08996 * 109.47472 * 182.13420 * 1 2 3 30 30 H 1.09004 * 109.46877 * 302.13556 * 1 2 3 31 31 H 1.09006 * 109.46638 * 62.12975 * 1 2 3 32 32 H 1.09001 * 115.55012 * 271.49930 * 3 2 1 33 33 H 1.08998 * 117.49691 * 359.97438 * 4 3 2 34 34 H 1.09001 * 117.50423 * 145.02029 * 4 3 2 35 35 H 1.08997 * 117.49998 * 214.97949 * 5 3 2 36 36 H 1.09006 * 117.49826 * 359.97438 * 5 3 2 37 37 H 0.97001 * 126.69652 * 298.61973 * 6 2 1 38 38 H 1.08997 * 109.47436 * 54.99315 * 12 10 9 39 39 H 1.09001 * 109.47613 * 174.99750 * 12 10 9 40 40 H 0.96992 * 120.00027 * 179.97438 * 16 15 13 41 41 H 1.07995 * 119.99882 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99682 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00153 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00445 * 179.72757 * 25 24 23 45 45 H 1.07996 * 120.00004 * 180.25949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 3.0578 1.8159 1.1008 5 6 1.6255 2.3525 1.1403 6 7 2.0514 -0.7487 1.1566 7 6 2.7604 -1.7787 0.6603 8 8 3.3276 -2.6031 1.3501 9 7 2.7743 -1.7920 -0.6775 10 6 3.4712 -2.7976 -1.4833 11 1 3.3171 -2.5859 -2.5413 12 6 4.9677 -2.7565 -1.1676 13 6 5.5370 -1.4312 -1.6043 14 1 4.8956 -0.6924 -2.0616 15 6 6.8766 -1.1619 -1.4200 16 7 7.6577 -2.0619 -0.8635 17 14 7.5823 0.4805 -1.9619 18 1 6.8928 1.5785 -1.2381 19 1 9.0348 0.5204 -1.6554 20 1 7.3806 0.6479 -3.4236 21 6 2.9271 -4.1653 -1.1602 22 6 1.6027 -4.3132 -0.7928 23 6 1.1035 -5.5679 -0.4970 24 6 1.9287 -6.6746 -0.5680 25 6 3.2547 -6.5259 -0.9297 26 6 3.7526 -5.2719 -1.2307 27 6 2.0633 -0.7694 -1.1922 28 8 1.8874 -0.5168 -2.3648 29 1 -0.3634 -1.0269 0.0383 30 1 -0.3633 0.5467 0.8703 31 1 -0.3633 0.4804 -0.9085 32 1 2.2076 1.8820 -0.9831 33 1 3.3272 1.0474 1.8253 34 1 3.8511 2.5173 0.8421 35 1 1.4765 3.4068 0.9074 36 1 0.9525 1.9370 1.8903 37 1 1.9081 -0.5418 2.0934 38 1 5.1163 -2.8799 -0.0949 39 1 5.4736 -3.5622 -1.6996 40 1 8.6001 -1.8726 -0.7341 41 1 0.9580 -3.4486 -0.7369 42 1 0.0686 -5.6835 -0.2104 43 1 1.5388 -7.6547 -0.3365 44 1 3.9006 -7.3899 -0.9809 45 1 4.7874 -5.1563 -1.5173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348942408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:11 Heat of formation + Delta-G solvation = 15.788566 kcal Electronic energy + Delta-G solvation = -29586.285376 eV Core-core repulsion = 25763.709727 eV Total energy + Delta-G solvation = -3822.575649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.26812 -39.03374 -38.07985 -37.65796 -35.33886 -34.87929 -32.77987 -31.47074 -30.55818 -30.30793 -28.73049 -25.71789 -24.81236 -23.02033 -22.68440 -22.26619 -21.76040 -21.37246 -20.03559 -19.21649 -17.61816 -17.13160 -16.41268 -16.09483 -15.79375 -15.41119 -15.18967 -14.87637 -14.61609 -14.31736 -14.23868 -14.15835 -13.60650 -13.40250 -13.07635 -12.93591 -12.71856 -12.54774 -12.49604 -12.07748 -11.77827 -11.60283 -11.42534 -11.28563 -10.93690 -10.76975 -10.65999 -10.62601 -10.51700 -10.27903 -9.97193 -9.93543 -9.57659 -9.21536 -9.12984 -8.91421 -8.52234 -8.37352 -8.21581 -6.02374 -4.04937 1.71817 1.79670 2.07004 2.72324 3.30894 3.34574 3.35631 3.38459 3.62800 3.80097 4.18800 4.23705 4.40340 4.43491 4.74484 4.91467 5.12535 5.16944 5.20526 5.23000 5.32089 5.33630 5.41736 5.48859 5.52722 5.58730 5.67676 5.83823 5.87682 5.91574 5.96512 6.04210 6.13742 6.14180 6.24695 6.30597 6.40704 6.53143 6.79424 6.87196 7.07660 7.10418 7.36965 7.51282 7.58861 7.76513 7.89458 7.95709 8.31267 8.68813 8.98905 9.58361 11.08501 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.007080 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.097814 B = 3953.650147 C = 6290.336992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.152 3.848 3 C -0.156 4.156 4 C -0.163 4.163 5 C -0.169 4.169 6 N -0.731 5.731 7 C 0.709 3.291 8 O -0.525 6.525 9 N -0.545 5.545 10 C 0.188 3.812 11 H 0.107 0.893 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.074 4.074 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.097 4.097 27 C 0.536 3.464 28 O -0.475 6.475 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.431 0.569 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.262 0.738 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.482 1.722 3.767 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.061 3.939 3 C -0.175 4.175 4 C -0.200 4.200 5 C -0.206 4.206 6 N -0.396 5.396 7 C 0.410 3.590 8 O -0.396 6.396 9 N -0.288 5.288 10 C 0.087 3.913 11 H 0.124 0.876 12 C -0.025 4.025 13 C -0.559 4.559 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.075 4.075 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.138 4.138 26 C -0.115 4.115 27 C 0.322 3.678 28 O -0.345 6.345 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.275 0.725 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.998 1.272 3.468 15.447 hybrid contribution 0.506 1.141 0.175 1.260 sum -14.492 2.413 3.643 15.137 Atomic orbital electron populations 1.21937 0.90648 1.03197 1.04108 1.20793 0.96065 0.91790 0.85264 1.22324 1.05773 0.92596 0.96833 1.23030 0.92680 1.03334 1.00939 1.22976 0.98348 0.99075 1.00246 1.45668 1.56379 1.29212 1.08351 1.15766 0.79195 0.81999 0.82024 1.90997 1.46748 1.40893 1.60971 1.46247 1.47398 1.27779 1.07403 1.20540 0.95702 0.80944 0.94096 0.87566 1.19628 0.85068 0.98063 0.99746 1.21027 0.93944 1.00621 1.40291 0.92946 1.24918 0.97093 0.96697 0.95106 1.69946 1.05502 1.34092 1.43213 0.86712 0.77961 0.84449 0.79263 1.20345 1.21234 1.20142 1.20216 0.93508 0.95525 0.98273 1.20806 0.95010 0.96887 1.00476 1.20946 0.99297 0.92742 1.01194 1.21023 0.94274 0.98169 1.01340 1.21119 0.95428 0.97279 0.99981 1.21278 1.00288 0.91595 0.98340 1.20497 0.77303 0.80541 0.89480 1.90735 1.58022 1.69122 1.16637 0.91614 0.90590 0.89943 0.86009 0.87956 0.88326 0.88395 0.88715 0.72523 0.93552 0.94318 0.92876 0.87675 0.86808 0.86707 0.86239 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.82 37.16 0.33 -1.08 16 2 C 0.15 2.07 1.17 -132.09 -0.15 1.91 16 3 C -0.16 -2.00 5.27 -90.63 -0.48 -2.48 16 4 C -0.16 -2.08 9.86 -26.73 -0.26 -2.34 16 5 C -0.17 -1.60 9.73 -26.73 -0.26 -1.86 16 6 N -0.73 -10.43 4.45 -52.94 -0.24 -10.66 16 7 C 0.71 13.72 7.42 -88.01 -0.65 13.07 16 8 O -0.52 -12.04 15.71 5.33 0.08 -11.96 16 9 N -0.54 -10.79 1.35 -114.84 -0.15 -10.94 16 10 C 0.19 4.04 2.52 -69.09 -0.17 3.86 16 11 H 0.11 2.32 7.64 -51.93 -0.40 1.92 16 12 C 0.01 0.31 3.83 -27.88 -0.11 0.20 16 13 C -0.52 -14.51 8.84 -34.44 -0.30 -14.81 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.07 -1.44 4.77 -104.62 -0.50 -1.94 16 22 C -0.11 -1.95 8.83 -39.58 -0.35 -2.30 16 23 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.10 -1.79 9.14 -39.58 -0.36 -2.16 16 27 C 0.54 9.69 6.98 -10.55 -0.07 9.62 16 28 O -0.47 -9.49 17.51 5.60 0.10 -9.39 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.57 7.15 -51.93 -0.37 0.20 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.12 1.67 8.13 -51.93 -0.42 1.24 16 33 H 0.10 1.38 6.73 -51.93 -0.35 1.03 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.73 7.47 -51.93 -0.39 0.35 16 37 H 0.43 4.92 8.58 -40.82 -0.35 4.57 16 38 H 0.05 1.33 6.59 -51.93 -0.34 0.99 16 39 H 0.04 1.02 6.22 -51.93 -0.32 0.69 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.11 1.72 7.38 -52.49 -0.39 1.33 16 42 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.14 2.62 6.01 -52.49 -0.32 2.30 16 LS Contribution 370.61 15.07 5.58 5.58 Total: -1.00 -33.48 370.61 -9.69 -43.18 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.15 Total: 8.48 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -4.64 Total: -5.37 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.35 Total: -47.30 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.18 Total: -21.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.48 -9.69 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348942408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.965 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds