Wall clock time and date at job start Tue Mar 31 2020 15:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.53701 * 2 1 4 4 C 1.52997 * 117.50278 * 125.79159 * 3 2 1 5 5 C 1.52998 * 117.50335 * 57.16525 * 3 2 1 6 6 N 1.47313 * 110.72562 * 122.91648 * 2 1 3 7 7 C 1.34533 * 106.61690 * 118.36688 * 6 2 1 8 8 O 1.21539 * 123.76958 * 180.20921 * 7 6 2 9 9 N 1.33791 * 112.45687 * 0.38125 * 7 6 2 10 10 C 1.46496 * 124.17911 * 179.86147 * 9 7 6 11 11 H 1.08998 * 109.47434 * 179.46105 * 10 9 7 12 12 C 1.52996 * 109.47350 * 299.46615 * 10 9 7 13 13 C 1.50707 * 109.47053 * 294.99849 * 12 10 9 14 14 H 1.07997 * 119.99394 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00187 * 179.97438 * 13 12 10 16 16 N 1.31520 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46961 * 60.00396 * 17 15 13 19 19 H 1.48504 * 109.46834 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47484 * 300.00243 * 17 15 13 21 21 C 1.50703 * 109.46888 * 59.46096 * 10 9 7 22 22 C 1.38238 * 119.99988 * 31.64026 * 21 10 9 23 23 C 1.38237 * 119.99892 * 179.97438 * 22 21 10 24 24 C 1.38231 * 120.00300 * 0.02562 * 23 22 21 25 25 C 1.38240 * 120.00026 * 0.26068 * 24 23 22 26 26 C 1.38239 * 119.99691 * 359.48122 * 25 24 23 27 27 C 1.34770 * 111.64578 * 359.59695 * 9 7 6 28 28 O 1.21231 * 127.16162 * 180.19430 * 27 9 7 29 29 H 1.08996 * 109.47472 * 182.13420 * 1 2 3 30 30 H 1.09004 * 109.46877 * 302.13556 * 1 2 3 31 31 H 1.09006 * 109.46638 * 62.12975 * 1 2 3 32 32 H 1.09001 * 115.55012 * 271.49930 * 3 2 1 33 33 H 1.08998 * 117.49691 * 359.97438 * 4 3 2 34 34 H 1.09001 * 117.50423 * 145.02029 * 4 3 2 35 35 H 1.08997 * 117.49998 * 214.97949 * 5 3 2 36 36 H 1.09006 * 117.49826 * 359.97438 * 5 3 2 37 37 H 0.97001 * 126.69652 * 298.61973 * 6 2 1 38 38 H 1.08997 * 109.47436 * 54.99315 * 12 10 9 39 39 H 1.09001 * 109.47613 * 174.99750 * 12 10 9 40 40 H 0.96992 * 120.00027 * 179.97438 * 16 15 13 41 41 H 1.07995 * 119.99882 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99682 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00153 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00445 * 179.72757 * 25 24 23 45 45 H 1.07996 * 120.00004 * 180.25949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 3.0578 1.8159 1.1008 5 6 1.6255 2.3525 1.1403 6 7 2.0514 -0.7487 1.1566 7 6 2.7604 -1.7787 0.6603 8 8 3.3276 -2.6031 1.3501 9 7 2.7743 -1.7920 -0.6775 10 6 3.4712 -2.7976 -1.4833 11 1 3.3171 -2.5859 -2.5413 12 6 4.9677 -2.7565 -1.1676 13 6 5.5370 -1.4312 -1.6043 14 1 4.8956 -0.6924 -2.0616 15 6 6.8766 -1.1619 -1.4200 16 7 7.6577 -2.0619 -0.8635 17 14 7.5823 0.4805 -1.9619 18 1 6.8928 1.5785 -1.2381 19 1 9.0348 0.5204 -1.6554 20 1 7.3806 0.6479 -3.4236 21 6 2.9271 -4.1653 -1.1602 22 6 1.6027 -4.3132 -0.7928 23 6 1.1035 -5.5679 -0.4970 24 6 1.9287 -6.6746 -0.5680 25 6 3.2547 -6.5259 -0.9297 26 6 3.7526 -5.2719 -1.2307 27 6 2.0633 -0.7694 -1.1922 28 8 1.8874 -0.5168 -2.3648 29 1 -0.3634 -1.0269 0.0383 30 1 -0.3633 0.5467 0.8703 31 1 -0.3633 0.4804 -0.9085 32 1 2.2076 1.8820 -0.9831 33 1 3.3272 1.0474 1.8253 34 1 3.8511 2.5173 0.8421 35 1 1.4765 3.4068 0.9074 36 1 0.9525 1.9370 1.8903 37 1 1.9081 -0.5418 2.0934 38 1 5.1163 -2.8799 -0.0949 39 1 5.4736 -3.5622 -1.6996 40 1 8.6001 -1.8726 -0.7341 41 1 0.9580 -3.4486 -0.7369 42 1 0.0686 -5.6835 -0.2104 43 1 1.5388 -7.6547 -0.3365 44 1 3.9006 -7.3899 -0.9809 45 1 4.7874 -5.1563 -1.5173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348942408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:10 Heat of formation + Delta-G solvation = -3.883432 kcal Electronic energy + Delta-G solvation = -29587.138418 eV Core-core repulsion = 25763.709727 eV Total energy + Delta-G solvation = -3823.428691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68339 -40.35518 -39.59603 -38.83168 -36.95287 -36.27741 -34.76314 -32.93151 -31.82448 -31.43881 -30.50764 -27.34394 -26.11556 -24.70466 -24.07409 -23.17646 -23.15770 -22.76267 -21.27396 -20.69393 -19.04426 -18.84429 -17.97704 -17.52082 -17.28896 -16.72253 -16.68662 -16.49388 -16.11708 -15.82269 -15.54736 -15.41182 -15.06015 -14.73400 -14.51772 -14.37776 -14.13724 -13.75652 -13.59867 -13.48159 -13.40612 -13.08407 -12.80606 -12.67621 -12.57882 -12.35728 -12.17001 -12.07235 -11.86546 -11.69504 -11.54569 -11.33039 -11.25223 -10.85042 -10.63762 -10.61720 -10.39452 -9.81813 -9.59808 -8.25129 -6.35550 0.40241 0.49721 0.63088 1.29476 1.30716 1.33558 1.41582 2.10012 2.15786 2.33349 2.81458 2.89556 2.94566 3.08390 3.37604 3.72868 3.77729 3.94807 4.01683 4.08911 4.13268 4.16202 4.26047 4.31373 4.47058 4.52564 4.54817 4.64933 4.69959 4.73921 4.78932 4.83386 4.99100 5.03777 5.12854 5.14849 5.16132 5.24861 5.33398 5.49725 5.53843 5.61005 5.69432 5.73754 5.89467 6.10007 6.12489 6.22704 6.43095 6.75526 7.23229 7.31638 8.86129 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.007080 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.097814 B = 3953.650147 C = 6290.336992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 C -0.178 4.178 4 C -0.190 4.190 5 C -0.119 4.119 6 N -0.705 5.705 7 C 0.704 3.296 8 O -0.569 6.569 9 N -0.553 5.553 10 C 0.195 3.805 11 H 0.091 0.909 12 C 0.029 3.971 13 C -0.533 4.533 14 H 0.045 0.955 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.953 3.047 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.125 4.125 27 C 0.522 3.478 28 O -0.501 6.501 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.447 0.553 38 H 0.009 0.991 39 H 0.019 0.981 40 H 0.264 0.736 41 H 0.109 0.891 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.144 0.856 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.629 2.698 4.983 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 C -0.198 4.198 4 C -0.228 4.228 5 C -0.156 4.156 6 N -0.371 5.371 7 C 0.405 3.595 8 O -0.444 6.444 9 N -0.296 5.296 10 C 0.094 3.906 11 H 0.108 0.892 12 C -0.008 4.008 13 C -0.571 4.571 14 H 0.063 0.937 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.100 4.100 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.143 4.143 27 C 0.311 3.689 28 O -0.374 6.374 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.294 0.706 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.170 0.830 43 H 0.175 0.825 44 H 0.162 0.838 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.187 2.295 4.698 18.924 hybrid contribution 1.488 0.784 -0.223 1.697 sum -16.699 3.079 4.475 17.561 Atomic orbital electron populations 1.22013 0.86868 1.04163 1.06224 1.20947 0.98438 0.91120 0.82094 1.22322 1.07504 0.92611 0.97324 1.23041 0.94704 1.03835 1.01176 1.23146 0.95400 0.99474 0.97558 1.45522 1.54750 1.27385 1.09474 1.15933 0.79332 0.82600 0.81639 1.90958 1.48818 1.42927 1.61718 1.46287 1.47519 1.28036 1.07805 1.20082 0.93458 0.83473 0.93628 0.89157 1.19291 0.88299 0.96509 0.96743 1.21279 0.94317 1.01314 1.40145 0.93650 1.25778 0.97453 1.00447 0.95055 1.70078 1.05816 1.36121 1.44238 0.85690 0.77497 0.79984 0.79118 1.19391 1.20289 1.19372 1.20088 0.95020 0.94180 1.00695 1.20920 0.93935 0.98472 1.00702 1.21397 1.01146 0.91610 0.99407 1.21508 0.93218 0.99953 0.99076 1.21429 0.96850 0.96568 0.99012 1.21244 0.99419 0.93244 1.00424 1.21415 0.76730 0.80218 0.90586 1.90701 1.58964 1.69591 1.18123 0.91447 0.86843 0.89238 0.87211 0.89093 0.89389 0.86273 0.85789 0.70568 0.97262 0.96286 0.92695 0.87301 0.83030 0.82502 0.83782 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.82 71.98 0.64 -1.60 16 2 C 0.16 4.25 1.17 2.98 0.00 4.25 16 3 C -0.18 -4.28 5.27 -10.80 -0.06 -4.34 16 4 C -0.19 -4.62 9.86 30.59 0.30 -4.32 16 5 C -0.12 -1.77 9.73 30.59 0.30 -1.47 16 6 N -0.70 -19.55 4.45 -439.81 -1.96 -21.51 16 7 C 0.70 28.13 7.42 179.44 1.33 29.46 16 8 O -0.57 -27.42 15.71 -3.84 -0.06 -27.48 16 9 N -0.55 -23.00 1.35 -754.48 -1.02 -24.02 16 10 C 0.20 9.07 2.52 44.25 0.11 9.19 16 11 H 0.09 4.33 7.64 -2.39 -0.02 4.32 16 12 C 0.03 1.61 3.83 29.85 0.11 1.72 16 13 C -0.53 -31.47 8.84 25.60 0.23 -31.24 16 14 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 15 C 0.01 0.68 5.46 84.65 0.46 1.14 16 16 N -0.92 -57.44 13.29 21.45 0.28 -57.16 16 17 Si 0.95 45.93 29.54 68.60 2.03 47.96 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.10 -4.06 4.77 -19.86 -0.09 -4.15 16 22 C -0.12 -4.19 8.83 22.27 0.20 -4.00 16 23 C -0.12 -3.23 10.05 22.27 0.22 -3.00 16 24 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 25 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 26 C -0.12 -4.93 9.14 22.27 0.20 -4.73 16 27 C 0.52 19.36 6.98 87.94 0.61 19.97 16 28 O -0.50 -20.75 17.51 -2.88 -0.05 -20.80 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.07 7.15 -2.38 -0.02 1.06 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.11 2.94 8.13 -2.39 -0.02 2.92 16 33 H 0.09 2.40 6.73 -2.39 -0.02 2.38 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 1.17 7.47 -2.38 -0.02 1.15 16 37 H 0.45 9.37 8.58 -92.71 -0.79 8.57 16 38 H 0.01 0.57 6.59 -2.39 -0.02 0.55 16 39 H 0.02 1.11 6.22 -2.39 -0.01 1.10 16 40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.11 3.55 7.38 -2.91 -0.02 3.53 16 42 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 43 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.11 4.79 6.01 -2.91 -0.02 4.78 16 Total: -1.00 -79.63 370.61 4.47 -75.16 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.23 Total: 27.34 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 5.02 Total: 0.49 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -2.69 Total: -102.68 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.11 Total: -48.28 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -79.63 4.47 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348942408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.276 kcal (2) G-P(sol) polarization free energy of solvation -79.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds