Wall clock time and date at job start Tue Mar 31 2020 15:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.86947 * 2 1 4 4 N 1.29949 * 126.29081 * 244.58060 * 3 2 1 5 5 O 1.21296 * 110.25532 * 180.02562 * 4 3 2 6 6 C 1.33639 * 109.81249 * 359.97438 * 5 4 3 7 7 C 1.50695 * 126.55288 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.47364 * 270.02846 * 7 6 5 9 9 H 1.09000 * 109.46810 * 54.99456 * 8 7 6 10 10 C 1.50704 * 109.46921 * 294.99894 * 8 7 6 11 11 H 1.08000 * 119.99774 * 121.17036 * 10 8 7 12 12 C 1.37872 * 119.99937 * 301.17128 * 10 8 7 13 13 N 1.31519 * 120.00377 * 6.30487 * 12 10 8 14 14 Si 1.86806 * 119.99991 * 186.30896 * 12 10 8 15 15 H 1.48500 * 109.46916 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46859 * 119.99444 * 14 12 10 17 17 H 1.48496 * 109.47267 * 239.99788 * 14 12 10 18 18 C 1.50699 * 109.47206 * 174.99787 * 8 7 6 19 19 C 1.38234 * 120.00234 * 211.57479 * 18 8 7 20 20 C 1.38229 * 120.00335 * 179.97438 * 19 18 8 21 21 C 1.38234 * 119.99752 * 0.02795 * 20 19 18 22 22 C 1.38230 * 120.00464 * 359.97278 * 21 20 19 23 23 C 1.38234 * 119.99853 * 31.55896 * 18 8 7 24 24 N 1.31133 * 106.89816 * 0.23256 * 6 5 4 25 25 C 1.54093 * 110.00503 * 238.91158 * 2 1 3 26 26 C 1.54813 * 104.19006 * 242.53566 * 25 2 1 27 27 C 1.55000 * 102.09037 * 20.87975 * 26 25 2 28 28 O 1.43748 * 109.87733 * 121.00220 * 2 1 3 29 29 H 1.09000 * 109.47175 * 60.70214 * 1 2 3 30 30 H 1.09005 * 109.47235 * 180.70094 * 1 2 3 31 31 H 1.09000 * 109.47567 * 300.70577 * 1 2 3 32 32 H 1.09006 * 109.47216 * 150.02941 * 7 6 5 33 33 H 1.09002 * 109.47102 * 30.02857 * 7 6 5 34 34 H 0.97003 * 119.99886 * 180.02562 * 13 12 10 35 35 H 1.08001 * 119.99682 * 359.97438 * 19 18 8 36 36 H 1.07996 * 120.00216 * 180.02562 * 20 19 18 37 37 H 1.08005 * 119.99711 * 179.70100 * 21 20 19 38 38 H 1.07999 * 120.00397 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00648 * 0.02562 * 23 18 8 40 40 H 1.08999 * 110.48769 * 1.20870 * 25 2 1 41 41 H 1.08995 * 110.48805 * 123.85958 * 25 2 1 42 42 H 1.08999 * 110.90667 * 262.68570 * 26 25 2 43 43 H 1.08997 * 110.94235 * 139.09107 * 26 25 2 44 44 H 1.08998 * 110.61992 * 204.47576 * 27 26 25 45 45 H 1.09004 * 110.75276 * 81.53974 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4172 0.0000 4 7 2.7264 1.9878 -0.9460 5 8 2.9878 3.1329 -0.6432 6 6 2.4792 3.4103 0.5611 7 6 2.5814 4.7206 1.2984 8 6 3.8411 4.7203 2.1668 9 1 4.7102 4.5018 1.5463 10 6 3.7121 3.6688 3.2387 11 1 4.4393 2.8731 3.3048 12 6 2.6657 3.7227 4.1348 13 7 1.7129 4.6160 3.9803 14 14 2.6012 2.5268 5.5684 15 1 3.7829 1.6289 5.5175 16 1 2.6092 3.2844 6.8456 17 1 1.3600 1.7162 5.4814 18 6 4.0093 6.0736 2.8083 19 6 5.2758 6.5612 3.0715 20 6 5.4301 7.8027 3.6594 21 6 4.3179 8.5564 3.9847 22 6 3.0514 8.0689 3.7216 23 6 2.8971 6.8274 3.1332 24 7 1.8791 2.3226 0.9812 25 6 2.0571 -0.7477 -1.2400 26 6 2.8374 -1.9500 -0.6549 27 6 2.2314 -2.0695 0.7667 28 8 2.0187 -0.6963 1.1587 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8836 32 1 1.7037 4.8507 1.9315 33 1 2.6356 5.5385 0.5799 34 1 0.9769 4.6541 4.6111 35 1 6.1447 5.9721 2.8178 36 1 6.4195 8.1837 3.8646 37 1 4.4383 9.5243 4.4484 38 1 2.1825 8.6576 3.9761 39 1 1.9077 6.4466 2.9278 40 1 1.2284 -1.0947 -1.8572 41 1 2.7222 -0.1062 -1.8181 42 1 3.9047 -1.7343 -0.6059 43 1 2.6514 -2.8543 -1.2343 44 1 2.9330 -2.5575 1.4432 45 1 1.2861 -2.6116 0.7393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350298465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:56 Heat of formation + Delta-G solvation = 52.001904 kcal Electronic energy + Delta-G solvation = -28534.289769 eV Core-core repulsion = 24713.284448 eV Total energy + Delta-G solvation = -3821.005321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.76330 -39.70491 -38.40380 -35.33894 -34.74718 -32.74153 -31.84313 -31.16656 -30.60200 -29.84291 -28.22164 -26.49600 -25.85059 -23.74623 -23.03111 -22.03900 -21.62264 -21.28195 -19.98520 -19.40735 -17.34095 -17.27733 -16.34064 -15.98271 -15.77580 -15.68761 -14.97980 -14.75725 -14.08705 -13.92612 -13.89799 -13.59857 -13.31468 -13.04021 -12.66765 -12.34703 -12.27464 -12.12040 -11.78942 -11.72067 -11.61611 -11.55511 -11.29117 -11.07099 -10.94307 -10.87284 -10.75965 -10.67268 -10.49061 -10.34272 -10.07609 -10.02951 -9.71342 -9.51850 -9.30269 -8.95188 -8.48467 -7.85688 -7.51167 -6.06012 -4.18134 1.91901 2.42558 2.51267 3.02548 3.33771 3.42202 3.45835 3.67442 3.79399 4.13527 4.43802 4.51409 4.71635 4.87105 4.90145 4.96831 5.13499 5.22653 5.27119 5.50789 5.56743 5.62528 5.68387 5.74101 5.76648 5.83337 5.90939 5.94104 5.99546 6.06294 6.22094 6.26195 6.38162 6.43666 6.55796 6.63959 6.69955 6.85972 6.94865 6.99723 7.06784 7.21281 7.38290 7.46094 7.63978 7.87532 7.99451 8.08450 8.19319 8.78994 8.98638 9.51631 10.89557 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.003991 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.447188 B = 7014.963617 C = 7877.721698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.201 3.799 3 C 0.164 3.836 4 N -0.402 5.402 5 O 0.053 5.947 6 C 0.230 3.770 7 C -0.040 4.040 8 C 0.082 3.918 9 H 0.034 0.966 10 C -0.501 4.501 11 H 0.057 0.943 12 C 0.086 3.914 13 N -0.877 5.877 14 Si 0.894 3.106 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.281 1.281 18 C -0.030 4.030 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.077 4.077 24 N -0.446 5.446 25 C -0.147 4.147 26 C -0.153 4.153 27 C 0.042 3.958 28 O -0.347 6.347 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.152 0.848 33 H 0.062 0.938 34 H 0.264 0.736 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -4.851 -8.001 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.160 3.840 3 C -0.110 4.110 4 N -0.115 5.115 5 O -0.004 6.004 6 C 0.011 3.989 7 C -0.079 4.079 8 C 0.062 3.938 9 H 0.053 0.947 10 C -0.538 4.538 11 H 0.075 0.925 12 C -0.117 4.117 13 N -0.515 5.515 14 Si 0.722 3.278 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.207 1.207 18 C -0.030 4.030 19 C -0.147 4.147 20 C -0.160 4.160 21 C -0.169 4.169 22 C -0.160 4.160 23 C -0.095 4.095 24 N -0.177 5.177 25 C -0.185 4.185 26 C -0.191 4.191 27 C -0.034 4.034 28 O -0.264 6.264 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.169 0.831 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.167 0.833 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.452 -5.395 -8.123 9.859 hybrid contribution 0.098 -0.611 1.010 1.184 sum -1.354 -6.005 -7.113 9.407 Atomic orbital electron populations 1.22176 0.92895 1.02631 1.03658 1.19909 0.93681 0.83951 0.86487 1.25324 0.98587 0.98840 0.88221 1.74390 1.18869 0.93481 1.24758 1.85213 1.58424 1.22556 1.34160 1.29294 0.88712 0.98902 0.81999 1.21010 1.07952 0.83155 0.95830 1.17814 0.91481 0.91007 0.93499 0.94721 1.20906 1.10588 1.08759 1.13520 0.92477 1.24698 0.94711 0.94868 0.97406 1.69474 1.10932 1.34624 1.36441 0.86483 0.78320 0.81060 0.81922 1.20001 1.21242 1.20703 1.20139 0.92071 0.94144 0.96678 1.20885 0.97130 0.95520 1.01208 1.20800 0.97444 0.95797 1.01925 1.20808 0.93333 0.99477 1.03327 1.21088 0.96062 0.97156 1.01685 1.21624 1.00702 0.91368 0.95814 1.72057 1.22299 0.98867 1.24500 1.23053 1.01090 0.97231 0.97152 1.23130 1.01024 0.98310 0.96614 1.23610 0.99854 0.84510 0.95470 1.89122 1.85836 1.20133 1.31333 0.91536 0.91454 0.90408 0.83072 0.91994 0.92519 0.87599 0.87981 0.88192 0.87897 0.83294 0.89906 0.88880 0.90388 0.90033 0.88762 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.60 37.16 0.32 -1.90 16 2 C 0.20 3.35 1.15 -91.21 -0.10 3.24 16 3 C 0.16 3.31 6.83 -156.37 -1.07 2.24 16 4 N -0.40 -7.98 10.71 30.90 0.33 -7.65 16 5 O 0.05 1.08 11.31 18.11 0.20 1.29 16 6 C 0.23 4.96 7.21 -13.06 -0.09 4.87 16 7 C -0.04 -0.84 4.36 -27.88 -0.12 -0.97 16 8 C 0.08 1.86 2.32 -92.92 -0.22 1.64 16 9 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 10 C -0.50 -12.88 8.09 -34.44 -0.28 -13.16 16 11 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 12 C 0.09 2.20 5.14 -17.82 -0.09 2.11 16 13 N -0.88 -21.79 7.74 55.43 0.43 -21.36 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.03 -0.64 4.68 -104.63 -0.49 -1.13 16 19 C -0.13 -2.61 9.70 -39.59 -0.38 -2.99 16 20 C -0.14 -2.59 10.05 -39.59 -0.40 -2.99 16 21 C -0.15 -2.73 10.05 -39.59 -0.40 -3.12 16 22 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 23 C -0.08 -1.61 7.55 -39.58 -0.30 -1.91 16 24 N -0.45 -10.17 11.50 -9.87 -0.11 -10.29 16 25 C -0.15 -1.93 6.25 -25.20 -0.16 -2.08 16 26 C -0.15 -1.72 7.15 -24.72 -0.18 -1.90 16 27 C 0.04 0.53 7.67 38.21 0.29 0.83 16 28 O -0.35 -6.31 10.84 -35.23 -0.38 -6.69 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.15 3.45 4.66 -51.93 -0.24 3.21 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.15 3.24 4.97 -52.49 -0.26 2.98 16 40 H 0.08 0.87 7.70 -51.93 -0.40 0.47 16 41 H 0.09 1.35 6.66 -51.93 -0.35 1.00 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -28.50 365.36 -9.39 -37.89 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.29 Total: 4.99 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -4.06 Total: -20.32 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.65 Total: -39.30 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.18 Total: -5.40 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.50 -9.39 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350298465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.892 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds