Wall clock time and date at job start Tue Mar 31 2020 15:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.48918 * 2 1 4 4 C 1.53097 * 109.47947 * 239.97574 * 2 1 3 5 5 C 1.53174 * 109.16415 * 297.62710 * 4 2 1 6 6 H 1.08997 * 109.54754 * 62.88661 * 5 4 2 7 7 C 1.50703 * 109.54330 * 183.15412 * 5 4 2 8 8 N 1.30113 * 126.16945 * 59.23999 * 7 5 4 9 9 O 1.21284 * 110.51709 * 179.83994 * 8 7 5 10 10 C 1.34301 * 109.65687 * 0.42912 * 9 8 7 11 11 C 1.47426 * 126.69165 * 179.75787 * 10 9 8 12 12 C 1.40139 * 119.89865 * 179.70518 * 11 10 9 13 13 C 1.36201 * 120.09768 * 179.71572 * 12 11 10 14 14 C 1.40970 * 119.89914 * 0.55374 * 13 12 11 15 15 C 1.40957 * 120.09805 * 179.69392 * 14 13 12 16 16 H 1.08003 * 119.99799 * 204.71532 * 15 14 13 17 17 C 1.40152 * 120.00020 * 24.72332 * 15 14 13 18 18 N 1.30694 * 120.00252 * 17.91872 * 17 15 14 19 19 Si 1.86808 * 119.99803 * 197.92454 * 17 15 14 20 20 H 1.48498 * 109.47201 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46889 * 119.99607 * 19 17 15 22 22 H 1.48499 * 109.46995 * 239.99653 * 19 17 15 23 23 C 1.40966 * 119.80266 * 359.71990 * 14 13 12 24 24 C 1.36204 * 119.89901 * 359.97438 * 23 14 13 25 25 N 1.32310 * 106.61283 * 359.73572 * 10 9 8 26 26 C 1.53183 * 109.03412 * 303.01572 * 5 4 2 27 27 C 1.53094 * 109.16083 * 56.98219 * 26 5 4 28 28 O 1.42898 * 109.48365 * 120.03541 * 2 1 3 29 29 H 1.09003 * 109.46930 * 299.96587 * 1 2 3 30 30 H 1.08998 * 109.47306 * 59.96975 * 1 2 3 31 31 H 1.09001 * 109.47267 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47076 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47408 * 300.03321 * 3 2 1 34 34 H 1.09010 * 109.46685 * 60.03666 * 3 2 1 35 35 H 1.08998 * 109.51939 * 57.53406 * 4 2 1 36 36 H 1.09003 * 109.52297 * 177.71620 * 4 2 1 37 37 H 1.07997 * 119.94913 * 359.97438 * 12 11 10 38 38 H 1.08005 * 120.05018 * 180.28757 * 13 12 11 39 39 H 0.97005 * 120.00396 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.05312 * 179.97438 * 23 14 13 41 41 H 1.07994 * 119.95025 * 180.02562 * 24 23 14 42 42 H 1.09002 * 109.52304 * 297.07776 * 26 5 4 43 43 H 1.08994 * 109.52010 * 176.88651 * 26 5 4 44 44 H 1.09004 * 109.47806 * 62.37237 * 27 26 5 45 45 H 1.09000 * 109.48176 * 182.40611 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 1.5756 -2.1812 -1.2124 6 1 0.4867 -2.2179 -1.2410 7 6 2.1381 -2.9200 -2.3994 8 7 3.3989 -3.0672 -2.6853 9 8 3.5313 -3.7138 -3.7028 10 6 2.3237 -4.0462 -4.1873 11 6 2.0483 -4.8248 -5.4085 12 6 0.7246 -5.0959 -5.7805 13 6 0.4654 -5.8099 -6.9110 14 6 1.5313 -6.2862 -7.7011 15 6 1.2680 -7.0310 -8.8685 16 1 2.0090 -7.7184 -9.2492 17 6 0.0446 -6.8795 -9.5354 18 7 -0.6992 -5.8297 -9.3059 19 14 -0.5230 -8.1784 -10.7522 20 1 0.4925 -9.2589 -10.8324 21 1 -1.8178 -8.7478 -10.3002 22 1 -0.6945 -7.5605 -12.0916 23 6 2.8613 -6.0159 -7.3200 24 6 3.1111 -5.2958 -6.1912 25 7 1.4293 -3.5391 -3.3545 26 6 2.0765 -2.8322 0.0806 27 6 1.5646 -2.0286 1.2788 28 8 2.0066 -0.6743 1.1662 29 1 -0.3633 0.5133 0.8903 30 1 -0.3634 0.5143 -0.8897 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1304 1.4420 -0.0005 33 1 1.6768 1.9565 -0.8896 34 1 1.6777 1.9561 0.8904 35 1 1.6420 -0.2355 -2.1399 36 1 3.1297 -0.6873 -1.2711 37 1 -0.0912 -4.7347 -5.1720 38 1 -0.5551 -6.0144 -7.1994 39 1 -1.5461 -5.7250 -9.7671 40 1 3.6809 -6.3793 -7.9221 41 1 4.1296 -5.0879 -5.8986 42 1 3.1665 -2.8400 0.0860 43 1 1.7037 -3.8546 0.1417 44 1 0.4750 -2.0551 1.2956 45 1 1.9531 -2.4624 2.2002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351167127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:18 Heat of formation + Delta-G solvation = 17.773758 kcal Electronic energy + Delta-G solvation = -27119.168514 eV Core-core repulsion = 23296.678949 eV Total energy + Delta-G solvation = -3822.489565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.65655 -40.20079 -37.83946 -35.72870 -34.42587 -33.81471 -33.48915 -31.62100 -29.87226 -29.52528 -28.40469 -27.54650 -26.03284 -25.03363 -23.21837 -22.99309 -21.73016 -20.73260 -20.07649 -19.16032 -17.67787 -17.28857 -17.14143 -16.33479 -16.04809 -15.62748 -15.36508 -14.82999 -14.77246 -14.20498 -14.14394 -13.65383 -13.41074 -13.10291 -12.85501 -12.69252 -12.33794 -12.32121 -12.16569 -12.13253 -11.89186 -11.87345 -11.67977 -11.44571 -11.36208 -11.31550 -11.20255 -11.19781 -10.87914 -10.54159 -10.36611 -10.19657 -10.04522 -9.73178 -9.65950 -9.63664 -9.25931 -7.86566 -7.57175 -7.19263 -4.73861 1.47372 2.45462 2.79429 2.87217 2.91808 2.92934 3.31164 3.54907 3.62856 3.66765 4.01139 4.31564 4.43474 4.58266 4.62186 4.79457 4.91894 4.96941 5.06798 5.19609 5.28586 5.36448 5.38748 5.46092 5.49278 5.56161 5.65891 5.75372 5.81641 5.89907 5.91805 5.97692 6.02998 6.06267 6.12583 6.27679 6.49000 6.64768 6.68511 6.72844 6.87774 7.00681 7.09451 7.29439 7.50784 7.69102 7.76374 7.88824 8.24355 8.45027 8.57141 8.92678 9.70789 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.002241 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.884926 B =12493.733697 C =12920.089476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.114 3.886 3 C -0.137 4.137 4 C -0.133 4.133 5 C 0.008 3.992 6 H 0.098 0.902 7 C 0.175 3.825 8 N -0.414 5.414 9 O 0.047 5.953 10 C 0.279 3.721 11 C -0.199 4.199 12 C -0.033 4.033 13 C -0.179 4.179 14 C 0.128 3.872 15 C -0.425 4.425 16 H 0.090 0.910 17 C 0.071 3.929 18 N -0.759 5.759 19 Si 0.916 3.084 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.229 4.229 24 C -0.036 4.036 25 N -0.526 5.526 26 C -0.147 4.147 27 C 0.062 3.938 28 O -0.373 6.373 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.290 0.710 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 6.857 11.986 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.074 3.926 3 C -0.194 4.194 4 C -0.171 4.171 5 C -0.012 4.012 6 H 0.116 0.884 7 C -0.098 4.098 8 N -0.130 5.130 9 O -0.005 6.005 10 C 0.070 3.930 11 C -0.204 4.204 12 C -0.053 4.053 13 C -0.199 4.199 14 C 0.123 3.877 15 C -0.452 4.452 16 H 0.108 0.892 17 C -0.152 4.152 18 N -0.381 5.381 19 Si 0.739 3.261 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.249 4.249 24 C -0.057 4.057 25 N -0.261 5.261 26 C -0.186 4.186 27 C -0.014 4.014 28 O -0.293 6.293 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.002 7.507 12.690 14.744 hybrid contribution -0.475 -0.761 -1.023 1.360 sum -0.477 6.746 11.667 13.486 Atomic orbital electron populations 1.22480 0.95553 1.02937 1.02918 1.21466 0.93199 0.92842 0.85049 1.21745 1.02070 0.93088 1.02485 1.22240 1.02586 0.93876 0.98445 1.19472 1.00548 0.92972 0.88206 0.88360 1.25304 0.86584 0.99716 0.98225 1.74424 1.20295 1.16030 1.02289 1.85316 1.33406 1.52313 1.29477 1.26718 0.78541 0.92649 0.95065 1.16655 0.94837 1.14138 0.94806 1.20405 0.93413 0.95752 0.95779 1.20978 0.99781 1.04355 0.94764 1.17857 0.91067 0.87558 0.91168 1.19964 0.99945 1.18877 1.06442 0.89238 1.26187 0.95731 0.95566 0.97742 1.69765 1.10775 1.23436 1.34131 0.86110 0.79757 0.80872 0.79351 1.17888 1.19185 1.19491 1.20662 0.96407 1.07951 0.99899 1.20383 0.96156 0.95305 0.93807 1.72134 1.30480 1.18233 1.05251 1.22248 1.02768 0.99884 0.93695 1.22567 0.98880 0.82064 0.97933 1.87956 1.73802 1.24485 1.43012 0.91709 0.91216 0.91695 0.91726 0.91022 0.91726 0.90587 0.90249 0.87821 0.85800 0.89860 0.87863 0.88127 0.90265 0.90538 0.92610 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 7.93 37.16 0.29 -1.39 16 2 C 0.11 1.21 1.11 -90.57 -0.10 1.11 16 3 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 4 C -0.13 -1.69 4.19 -26.59 -0.11 -1.80 16 5 C 0.01 0.11 2.44 -91.59 -0.22 -0.11 16 6 H 0.10 1.33 6.62 -51.93 -0.34 0.98 16 7 C 0.18 3.23 6.71 -156.60 -1.05 2.18 16 8 N -0.41 -8.09 12.15 31.25 0.38 -7.71 16 9 O 0.05 0.98 11.12 16.38 0.18 1.16 16 10 C 0.28 5.98 7.99 -13.93 -0.11 5.87 16 11 C -0.20 -4.43 5.89 -104.73 -0.62 -5.05 16 12 C -0.03 -0.76 9.63 -39.60 -0.38 -1.14 16 13 C -0.18 -4.28 8.63 -39.28 -0.34 -4.62 16 14 C 0.13 3.06 5.57 -106.80 -0.60 2.46 16 15 C -0.43 -9.89 9.03 -37.83 -0.34 -10.23 16 16 H 0.09 1.96 7.91 -52.48 -0.42 1.55 16 17 C 0.07 1.56 5.13 -17.32 -0.09 1.47 16 18 N -0.76 -17.34 10.96 55.56 0.61 -16.74 16 19 Si 0.92 16.26 29.60 -169.99 -5.03 11.23 16 20 H -0.26 -4.50 7.11 56.52 0.40 -4.09 16 21 H -0.27 -4.70 7.11 56.52 0.40 -4.29 16 22 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 23 C -0.23 -5.09 9.73 -39.28 -0.38 -5.47 16 24 C -0.04 -0.77 9.66 -39.60 -0.38 -1.16 16 25 N -0.53 -10.95 11.24 -10.16 -0.11 -11.06 16 26 C -0.15 -1.81 5.41 -26.59 -0.14 -1.96 16 27 C 0.06 0.63 6.52 37.21 0.24 0.88 16 28 O -0.37 -4.39 10.24 -35.23 -0.36 -4.75 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.61 4.97 -51.93 -0.26 0.35 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.10 2.27 7.86 -52.49 -0.41 1.86 16 38 H 0.12 3.00 6.16 -52.48 -0.32 2.68 16 39 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.10 1.91 7.93 -52.49 -0.42 1.49 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.50 6.34 -51.93 -0.33 0.18 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -26.00 366.60 -9.10 -35.09 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.28 Total: 7.11 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -4.00 Total: -19.86 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.87 Total: -35.51 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.18 Total: -3.59 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.00 -9.10 -35.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351167127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.869 kcal (2) G-P(sol) polarization free energy of solvation -25.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds