Wall clock time and date at job start Tue Mar 31 2020 15:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21353 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.49448 * 120.00494 * 179.97438 * 14 13 12 17 17 O 1.21353 * 119.99874 * 0.02562 * 16 14 13 18 18 N 1.34778 * 120.00712 * 179.97438 * 16 14 13 19 19 C 1.46493 * 120.00609 * 179.97438 * 18 16 14 20 20 C 1.52996 * 109.47399 * 180.02562 * 19 18 16 21 21 C 1.52992 * 110.30547 * 65.71771 * 20 19 18 22 22 C 1.53713 * 110.34095 * 188.00609 * 20 19 18 23 23 C 1.52940 * 112.49045 * 116.04707 * 22 20 19 24 24 C 1.55148 * 108.96322 * 30.09769 * 23 22 20 25 25 S 1.83394 * 110.33837 * 303.54804 * 20 19 18 26 26 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 27 27 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 28 28 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 31 31 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 32 32 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 35 35 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 36 36 H 0.97000 * 119.99350 * 0.02562 * 18 16 14 37 37 H 1.09004 * 109.47133 * 300.00519 * 19 18 16 38 38 H 1.09000 * 109.46746 * 59.99806 * 19 18 16 39 39 H 1.09000 * 109.47195 * 60.70347 * 21 20 19 40 40 H 1.09002 * 109.47383 * 180.70061 * 21 20 19 41 41 H 1.09007 * 109.47486 * 300.70374 * 21 20 19 42 42 H 1.08997 * 108.87917 * 236.83724 * 22 20 19 43 43 H 1.09001 * 108.88758 * 355.24725 * 22 20 19 44 44 H 1.08996 * 109.60063 * 270.16490 * 23 22 20 45 45 H 1.08996 * 109.45071 * 149.93985 * 23 22 20 46 46 H 1.08998 * 111.13323 * 200.64661 * 24 23 22 47 47 H 1.09002 * 111.12955 * 76.46966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.8178 -1.1115 4.0022 10 1 1.8417 -0.4092 5.2204 11 1 1.8384 -2.5124 4.0138 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5753 -1.4775 -3.7808 16 6 1.3792 0.2133 -4.8897 17 8 0.6812 1.1998 -4.7784 18 7 1.7056 -0.2465 -6.1139 19 6 1.2165 0.4434 -7.3100 20 6 1.7272 -0.2773 -8.5592 21 6 1.1160 -1.6768 -8.6519 22 6 1.3954 0.5377 -9.8195 23 6 2.6489 1.0234 -10.5490 24 6 3.7953 0.0048 -10.3142 25 16 3.5579 -0.3819 -8.5311 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7164 1.1668 3.4844 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 0.9938 0.7578 -2.3564 36 1 2.2639 -1.0348 -6.2028 37 1 0.1265 0.4419 -7.3102 38 1 1.5783 1.4716 -7.3098 39 1 0.0311 -1.5957 -8.7191 40 1 1.4981 -2.1822 -9.5389 41 1 1.3833 -2.2496 -7.7639 42 1 0.8110 -0.0839 -10.4978 43 1 0.7965 1.4022 -9.5331 44 1 2.9419 1.9994 -10.1622 45 1 2.4408 1.1005 -11.6161 46 1 4.7691 0.4615 -10.4911 47 1 3.6628 -0.8847 -10.9302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422383151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:15 Heat of formation + Delta-G solvation = -86.096137 kcal Electronic energy + Delta-G solvation = -26018.207891 eV Core-core repulsion = 22326.658141 eV Total energy + Delta-G solvation = -3691.549750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41859 -38.61555 -37.62359 -36.44824 -34.94759 -33.30214 -32.01582 -30.86679 -27.79589 -27.16997 -25.88578 -25.70148 -25.16920 -23.44872 -22.28317 -20.95499 -19.93435 -18.96796 -18.31292 -16.83871 -16.64822 -16.16693 -15.83255 -15.74241 -15.03860 -14.99037 -14.71014 -14.67051 -14.39300 -13.95984 -13.64363 -13.44545 -13.25511 -13.05079 -12.91098 -12.66723 -12.20074 -12.14138 -11.97901 -11.64335 -11.53821 -11.38060 -11.37485 -11.18307 -11.14817 -10.84522 -10.72557 -10.37645 -10.19610 -10.18482 -9.63036 -9.52351 -9.31222 -9.20219 -8.79069 -8.56846 -8.34938 -8.05763 -6.00829 -4.11551 1.34464 1.68416 1.90068 2.59594 3.31152 3.35628 3.38878 3.51084 3.86993 4.01643 4.06138 4.23342 4.40480 4.41786 4.57223 4.69032 4.84721 4.97971 5.09639 5.19908 5.25481 5.25651 5.29172 5.34971 5.41645 5.45891 5.58123 5.74513 6.11057 6.14123 6.26247 6.49437 6.66333 6.85003 6.87318 6.96396 7.02539 7.10533 7.35342 7.57114 7.68525 7.73066 7.99296 8.02043 8.14694 8.35115 8.44156 8.88396 9.54105 11.00541 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032438 B = 0.002197 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.964782 B =12740.222707 C =12997.478822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.496 3.504 15 O -0.534 6.534 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.702 5.702 19 C 0.141 3.859 20 C -0.028 4.028 21 C -0.136 4.136 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.074 4.074 25 S -0.272 6.272 26 H 0.087 0.913 27 H 0.008 0.992 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.008 0.992 31 H 0.087 0.913 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 0.039 -27.267 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.412 6.412 16 C 0.291 3.709 17 O -0.396 6.396 18 N -0.357 5.357 19 C 0.016 3.984 20 C -0.139 4.139 21 C -0.195 4.195 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.222 4.222 25 S -0.044 6.044 26 H 0.105 0.895 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.124 0.876 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.806 -0.066 -26.182 26.194 hybrid contribution -0.392 -0.231 -0.105 0.467 sum 0.414 -0.297 -26.287 26.292 Atomic orbital electron populations 1.21855 0.97605 0.99275 1.00369 1.18375 0.92966 0.92862 0.90255 1.21860 0.98643 0.98265 1.00401 1.20914 1.31782 1.12106 0.89783 0.92406 1.24886 0.94854 0.94909 0.98864 1.69801 1.36502 1.22601 1.23382 0.86613 0.79238 0.79730 0.82139 1.20275 1.21336 1.20284 1.21940 0.98576 0.96020 0.82846 1.46203 1.50438 1.31419 1.05110 1.19925 0.82432 0.85262 0.84894 1.90733 1.37781 1.25915 1.86736 1.20474 0.80932 0.84646 0.84893 1.90750 1.36656 1.25357 1.86858 1.45732 1.52913 1.32480 1.04591 1.21462 0.99443 0.96242 0.81215 1.23547 0.93344 0.99352 0.97615 1.22078 1.00706 0.93293 1.03385 1.22093 0.98988 1.00571 0.94399 1.22381 0.93008 0.99509 1.01427 1.24359 1.02293 1.01754 0.93781 1.88243 1.07561 1.94196 1.14420 0.89467 0.97264 0.95346 0.95338 0.97255 0.89421 0.92898 0.92000 0.92014 0.75210 0.74909 0.89841 0.89958 0.91272 0.91456 0.91244 0.90259 0.89666 0.90181 0.89963 0.87555 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -3.11 8.07 37.16 0.30 -2.81 16 4 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -23.75 9.35 55.43 0.52 -23.24 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.73 4.50 -4.05 -0.02 2.72 16 13 N -0.68 -12.98 4.95 -60.74 -0.30 -13.28 16 14 C 0.50 9.04 7.89 -11.59 -0.09 8.95 16 15 O -0.53 -10.66 16.48 5.49 0.09 -10.57 16 16 C 0.51 8.11 7.89 -11.59 -0.09 8.02 16 17 O -0.52 -9.13 16.48 5.49 0.09 -9.04 16 18 N -0.70 -8.89 5.01 -60.73 -0.30 -9.19 16 19 C 0.14 1.37 4.39 -4.05 -0.02 1.36 16 20 C -0.03 -0.21 0.84 -90.25 -0.08 -0.29 16 21 C -0.14 -0.93 8.26 37.15 0.31 -0.62 16 22 C -0.12 -0.63 5.74 -26.39 -0.15 -0.78 16 23 C -0.12 -0.59 6.34 -25.63 -0.16 -0.75 16 24 C -0.07 -0.43 7.52 38.29 0.29 -0.14 16 25 S -0.27 -2.56 21.15 -107.50 -2.27 -4.83 16 26 H 0.09 2.21 6.08 -51.93 -0.32 1.90 16 27 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 31 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.41 7.69 5.64 -40.82 -0.23 7.46 16 36 H 0.41 5.24 6.57 -40.82 -0.27 4.97 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.57 7.28 -51.92 -0.38 0.19 16 42 H 0.08 0.32 7.62 -51.93 -0.40 -0.07 16 43 H 0.08 0.41 7.62 -51.93 -0.40 0.01 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -29.26 381.83 -8.93 -38.19 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.63 Total: 8.25 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 0.14 Total: 2.22 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.09 Total: -45.71 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.18 Total: -19.61 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.27 Total: -4.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.26 -8.93 -38.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422383151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.907 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds