Wall clock time and date at job start Tue Mar 31 2020 15:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30168 * 126.80311 * 2 1 4 4 O 1.20922 * 111.60805 * 179.97438 * 3 2 1 5 5 C 1.34047 * 111.56103 * 359.76220 * 4 3 2 6 6 C 1.50708 * 126.77392 * 180.28502 * 5 4 3 7 7 C 1.35444 * 106.44823 * 0.38162 * 5 4 3 8 8 C 1.50697 * 128.00917 * 179.91725 * 7 5 4 9 9 H 1.09006 * 109.46874 * 5.16137 * 8 7 5 10 10 C 1.53005 * 109.47127 * 245.17097 * 8 7 5 11 11 C 1.52999 * 109.47420 * 125.16651 * 8 7 5 12 12 C 1.50699 * 109.46806 * 185.00142 * 11 8 7 13 13 O 1.21286 * 120.00264 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99819 * 180.02562 * 12 11 8 15 15 C 1.39937 * 120.00024 * 184.71710 * 14 12 11 16 16 C 1.39292 * 119.95008 * 144.46228 * 15 14 12 17 17 C 1.38484 * 120.43319 * 179.97438 * 16 15 14 18 18 C 1.37690 * 120.31926 * 359.97438 * 17 16 15 19 19 C 1.40740 * 119.88278 * 359.97438 * 18 17 16 20 20 C 1.41411 * 120.20728 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99971 * 150.84568 * 20 19 18 22 22 C 1.39939 * 120.00001 * 330.84409 * 20 19 18 23 23 N 1.30830 * 119.99806 * 349.64827 * 22 20 19 24 24 Si 1.86801 * 119.99741 * 169.64646 * 22 20 19 25 25 H 1.48494 * 109.46926 * 94.99887 * 24 22 20 26 26 H 1.48501 * 109.46848 * 214.99395 * 24 22 20 27 27 H 1.48497 * 109.47199 * 334.99459 * 24 22 20 28 28 C 1.38237 * 119.94722 * 324.18012 * 15 14 12 29 29 H 1.09003 * 109.46737 * 274.89847 * 1 2 3 30 30 H 1.08999 * 109.47298 * 34.89380 * 1 2 3 31 31 H 1.08992 * 109.47352 * 154.89877 * 1 2 3 32 32 H 1.09002 * 109.46970 * 274.88560 * 6 5 4 33 33 H 1.08997 * 109.46798 * 34.88427 * 6 5 4 34 34 H 1.09002 * 109.46880 * 154.88384 * 6 5 4 35 35 H 1.09004 * 109.46254 * 304.59623 * 10 8 7 36 36 H 1.08999 * 109.47415 * 64.59077 * 10 8 7 37 37 H 1.08999 * 109.47000 * 184.60121 * 10 8 7 38 38 H 1.08995 * 109.47313 * 64.99991 * 11 8 7 39 39 H 1.08997 * 109.46898 * 304.99932 * 11 8 7 40 40 H 0.96997 * 119.99939 * 4.43734 * 14 12 11 41 41 H 1.08005 * 119.78068 * 0.02562 * 16 15 14 42 42 H 1.07999 * 119.84183 * 180.02562 * 17 16 15 43 43 H 1.07991 * 120.05492 * 179.97438 * 18 17 16 44 44 H 0.97000 * 119.99321 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.16040 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0061 6 6 4.9021 -1.3697 0.0144 7 6 2.3539 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0017 9 1 2.8510 -3.2050 0.1003 10 6 1.2477 -2.9227 -1.3106 11 6 1.0173 -2.8583 1.1765 12 6 0.7200 -4.3338 1.2508 13 8 1.2125 -5.0931 0.4434 14 7 -0.0939 -4.8096 2.2140 15 6 -0.2919 -6.1887 2.3446 16 6 -0.4511 -6.7518 3.6086 17 6 -0.6481 -8.1153 3.7494 18 6 -0.6894 -8.9298 2.6401 19 6 -0.5311 -8.3749 1.3564 20 6 -0.5718 -9.2051 0.2124 21 1 -0.9179 -8.8085 -0.7306 22 6 -0.1635 -10.5406 0.3022 23 7 0.4424 -10.9683 1.3800 24 14 -0.4837 -11.7126 -1.1167 25 1 0.7169 -11.7741 -1.9884 26 1 -0.7781 -13.0668 -0.5833 27 1 -1.6445 -11.2284 -1.9063 28 6 -0.3350 -6.9893 1.2185 29 1 -0.3633 0.0878 1.0240 30 1 -0.3634 0.8429 -0.5879 31 1 -0.3633 -0.9305 -0.4359 32 1 5.2641 -1.4819 -1.0076 33 1 5.6396 -0.8243 0.6032 34 1 4.7426 -2.3544 0.4536 35 1 0.4023 -2.2486 -1.4486 36 1 1.9439 -2.8071 -2.1412 37 1 0.8900 -3.9518 -1.2766 38 1 0.0880 -2.3073 1.0323 39 1 1.4907 -2.5358 2.1038 40 1 -0.5392 -4.1962 2.8192 41 1 -0.4215 -6.1207 4.4846 42 1 -0.7709 -8.5417 4.7340 43 1 -0.8429 -9.9926 2.7548 44 1 0.7258 -11.8939 1.4420 45 1 -0.2158 -6.5531 0.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456761655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:23 Heat of formation + Delta-G solvation = 28.767822 kcal Electronic energy + Delta-G solvation = -27288.697239 eV Core-core repulsion = 23466.684412 eV Total energy + Delta-G solvation = -3822.012827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.07017 -39.91351 -37.55477 -36.42831 -34.46172 -33.93166 -33.02031 -32.53658 -29.80755 -29.12252 -28.89047 -27.77283 -27.06542 -25.28074 -24.00667 -21.82157 -20.93847 -20.50981 -20.23423 -19.50920 -17.81213 -17.67615 -16.97974 -16.62281 -15.63299 -15.44634 -15.11742 -14.66287 -14.53968 -14.38052 -13.75571 -13.64903 -13.48078 -13.36732 -13.27037 -13.07351 -12.91781 -12.81005 -12.66553 -12.36148 -12.13525 -11.75652 -11.53900 -11.38834 -11.32511 -11.24909 -11.08811 -10.65012 -10.62643 -10.48929 -10.13694 -9.97548 -9.75013 -9.39724 -9.26653 -9.07919 -8.83288 -7.41061 -6.91337 -6.65812 -4.34295 1.30471 2.04011 2.60609 2.84556 2.94619 3.10500 3.15320 3.18661 3.31761 3.60841 3.98693 4.03228 4.28308 4.53630 4.67004 4.72719 4.91223 4.97308 5.10122 5.14072 5.17485 5.24305 5.34560 5.35677 5.48598 5.53117 5.57802 5.70578 5.72472 5.79995 5.92719 6.01243 6.20845 6.23452 6.37370 6.43459 6.78039 7.02264 7.04970 7.09324 7.27658 7.55834 7.73371 7.96934 8.10288 8.13186 8.17592 8.26730 8.64630 8.73647 8.95677 8.98878 10.28209 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.002624 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.061721 B =10668.230313 C =11312.278353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.026 3.974 3 N -0.371 5.371 4 O 0.093 5.907 5 C -0.031 4.031 6 C -0.076 4.076 7 C -0.190 4.190 8 C 0.005 3.995 9 H 0.093 0.907 10 C -0.152 4.152 11 C -0.136 4.136 12 C 0.503 3.497 13 O -0.511 6.511 14 N -0.669 5.669 15 C 0.145 3.855 16 C -0.258 4.258 17 C -0.096 4.096 18 C -0.166 4.166 19 C 0.117 3.883 20 C -0.458 4.458 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.803 5.803 24 Si 0.910 3.090 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.205 4.205 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.397 0.603 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.278 0.722 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 16.950 -0.723 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.193 4.193 8 C -0.014 4.014 9 H 0.111 0.889 10 C -0.209 4.209 11 C -0.176 4.176 12 C 0.290 3.710 13 O -0.386 6.386 14 N -0.313 5.313 15 C 0.054 3.946 16 C -0.279 4.279 17 C -0.115 4.115 18 C -0.186 4.186 19 C 0.114 3.886 20 C -0.488 4.488 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.429 5.429 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.226 4.226 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.231 0.769 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.089 0.911 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.493 17.544 -1.232 17.930 hybrid contribution -0.271 -0.934 -0.092 0.977 sum 3.222 16.610 -1.324 16.971 Atomic orbital electron populations 1.20335 0.86191 1.04027 1.03434 1.23394 0.98814 0.88443 1.02612 1.73814 0.89344 1.24018 1.20522 1.84786 1.21605 1.22592 1.68133 1.24267 0.98310 0.83675 1.03168 1.20381 0.89942 0.98815 1.04169 1.21017 0.91522 0.97395 1.09407 1.19173 0.99291 0.87744 0.95196 0.88901 1.21998 0.99891 1.03717 0.95255 1.21768 1.01624 0.93797 1.00379 1.20529 0.78846 0.90253 0.81419 1.90737 1.50470 1.58754 1.38618 1.43472 1.46649 1.07157 1.34033 1.17460 1.02055 0.80788 0.94329 1.20082 1.19082 0.95197 0.93563 1.20484 1.00811 0.92828 0.97337 1.21403 1.05585 0.99703 0.91917 1.17538 0.87247 0.90596 0.93225 1.19536 1.38516 0.94268 0.96493 0.90582 1.25874 0.92714 0.98823 0.96893 1.69803 1.28403 1.17262 1.27432 0.86266 0.79730 0.79195 0.81307 1.19621 1.20165 1.18544 1.21117 1.10992 0.94239 0.96254 0.90095 0.90563 0.89510 0.89397 0.89866 0.88710 0.93089 0.92745 0.89411 0.88853 0.89051 0.76893 0.89369 0.89075 0.86196 0.91078 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.15 36.01 0.33 -0.37 16 2 C 0.03 0.30 7.21 -82.10 -0.59 -0.30 16 3 N -0.37 -4.71 12.07 33.42 0.40 -4.31 16 4 O 0.09 1.10 11.20 17.16 0.19 1.30 16 5 C -0.03 -0.32 7.49 -35.30 -0.26 -0.58 16 6 C -0.08 -0.53 10.27 36.01 0.37 -0.16 16 7 C -0.19 -2.07 4.94 -104.43 -0.52 -2.59 16 8 C 0.01 0.06 2.30 -91.77 -0.21 -0.15 16 9 H 0.09 1.13 6.80 -51.93 -0.35 0.78 16 10 C -0.15 -1.83 8.94 37.16 0.33 -1.50 16 11 C -0.14 -1.52 4.95 -27.88 -0.14 -1.65 16 12 C 0.50 8.13 7.35 -10.98 -0.08 8.05 16 13 O -0.51 -10.42 11.46 5.55 0.06 -10.36 16 14 N -0.67 -11.15 5.33 -9.91 -0.05 -11.21 16 15 C 0.15 3.17 6.28 -83.77 -0.53 2.65 16 16 C -0.26 -5.55 9.97 -39.10 -0.39 -5.94 16 17 C -0.10 -2.20 10.02 -39.69 -0.40 -2.60 16 18 C -0.17 -4.32 8.65 -38.84 -0.34 -4.66 16 19 C 0.12 3.17 5.55 -106.85 -0.59 2.57 16 20 C -0.46 -12.43 9.06 -37.74 -0.34 -12.78 16 21 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 22 C 0.07 1.87 5.26 -17.34 -0.09 1.78 16 23 N -0.80 -21.13 10.85 55.55 0.60 -20.53 16 24 Si 0.91 19.10 29.57 -169.99 -5.03 14.07 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 28 C -0.20 -5.15 8.43 -38.69 -0.33 -5.48 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.68 5.15 -51.93 -0.27 0.41 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.65 7.14 -51.93 -0.37 0.28 16 35 H 0.05 0.54 5.97 -51.93 -0.31 0.23 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 38 H 0.09 0.86 6.10 -51.93 -0.32 0.54 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.40 5.03 8.82 -40.82 -0.36 4.67 16 41 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.12 3.21 6.23 -52.49 -0.33 2.89 16 44 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 45 H 0.11 2.87 6.26 -52.49 -0.33 2.54 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -31.72 367.10 -7.93 -39.65 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.87 Total: 9.55 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -3.77 Total: -23.70 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.95 Total: -36.04 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.26 Total: -9.06 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.72 -7.93 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456761655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.416 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds