Wall clock time and date at job start Tue Mar 31 2020 15:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30168 * 126.80311 * 2 1 4 4 O 1.20922 * 111.60805 * 179.97438 * 3 2 1 5 5 C 1.34047 * 111.56103 * 359.76220 * 4 3 2 6 6 C 1.50708 * 126.77392 * 180.28502 * 5 4 3 7 7 C 1.35444 * 106.44823 * 0.38162 * 5 4 3 8 8 C 1.50697 * 128.00917 * 179.91725 * 7 5 4 9 9 H 1.09006 * 109.46874 * 5.16137 * 8 7 5 10 10 C 1.53005 * 109.47127 * 245.17097 * 8 7 5 11 11 C 1.52999 * 109.47420 * 125.16651 * 8 7 5 12 12 C 1.50699 * 109.46806 * 185.00142 * 11 8 7 13 13 O 1.21286 * 120.00264 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99819 * 180.02562 * 12 11 8 15 15 C 1.39937 * 120.00024 * 184.71710 * 14 12 11 16 16 C 1.39292 * 119.95008 * 144.46228 * 15 14 12 17 17 C 1.38484 * 120.43319 * 179.97438 * 16 15 14 18 18 C 1.37690 * 120.31926 * 359.97438 * 17 16 15 19 19 C 1.40740 * 119.88278 * 359.97438 * 18 17 16 20 20 C 1.41411 * 120.20728 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99971 * 150.84568 * 20 19 18 22 22 C 1.39939 * 120.00001 * 330.84409 * 20 19 18 23 23 N 1.30830 * 119.99806 * 349.64827 * 22 20 19 24 24 Si 1.86801 * 119.99741 * 169.64646 * 22 20 19 25 25 H 1.48494 * 109.46926 * 94.99887 * 24 22 20 26 26 H 1.48501 * 109.46848 * 214.99395 * 24 22 20 27 27 H 1.48497 * 109.47199 * 334.99459 * 24 22 20 28 28 C 1.38237 * 119.94722 * 324.18012 * 15 14 12 29 29 H 1.09003 * 109.46737 * 274.89847 * 1 2 3 30 30 H 1.08999 * 109.47298 * 34.89380 * 1 2 3 31 31 H 1.08992 * 109.47352 * 154.89877 * 1 2 3 32 32 H 1.09002 * 109.46970 * 274.88560 * 6 5 4 33 33 H 1.08997 * 109.46798 * 34.88427 * 6 5 4 34 34 H 1.09002 * 109.46880 * 154.88384 * 6 5 4 35 35 H 1.09004 * 109.46254 * 304.59623 * 10 8 7 36 36 H 1.08999 * 109.47415 * 64.59077 * 10 8 7 37 37 H 1.08999 * 109.47000 * 184.60121 * 10 8 7 38 38 H 1.08995 * 109.47313 * 64.99991 * 11 8 7 39 39 H 1.08997 * 109.46898 * 304.99932 * 11 8 7 40 40 H 0.96997 * 119.99939 * 4.43734 * 14 12 11 41 41 H 1.08005 * 119.78068 * 0.02562 * 16 15 14 42 42 H 1.07999 * 119.84183 * 180.02562 * 17 16 15 43 43 H 1.07991 * 120.05492 * 179.97438 * 18 17 16 44 44 H 0.97000 * 119.99321 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.16040 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0061 6 6 4.9021 -1.3697 0.0144 7 6 2.3539 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0017 9 1 2.8510 -3.2050 0.1003 10 6 1.2477 -2.9227 -1.3106 11 6 1.0173 -2.8583 1.1765 12 6 0.7200 -4.3338 1.2508 13 8 1.2125 -5.0931 0.4434 14 7 -0.0939 -4.8096 2.2140 15 6 -0.2919 -6.1887 2.3446 16 6 -0.4511 -6.7518 3.6086 17 6 -0.6481 -8.1153 3.7494 18 6 -0.6894 -8.9298 2.6401 19 6 -0.5311 -8.3749 1.3564 20 6 -0.5718 -9.2051 0.2124 21 1 -0.9179 -8.8085 -0.7306 22 6 -0.1635 -10.5406 0.3022 23 7 0.4424 -10.9683 1.3800 24 14 -0.4837 -11.7126 -1.1167 25 1 0.7169 -11.7741 -1.9884 26 1 -0.7781 -13.0668 -0.5833 27 1 -1.6445 -11.2284 -1.9063 28 6 -0.3350 -6.9893 1.2185 29 1 -0.3633 0.0878 1.0240 30 1 -0.3634 0.8429 -0.5879 31 1 -0.3633 -0.9305 -0.4359 32 1 5.2641 -1.4819 -1.0076 33 1 5.6396 -0.8243 0.6032 34 1 4.7426 -2.3544 0.4536 35 1 0.4023 -2.2486 -1.4486 36 1 1.9439 -2.8071 -2.1412 37 1 0.8900 -3.9518 -1.2766 38 1 0.0880 -2.3073 1.0323 39 1 1.4907 -2.5358 2.1038 40 1 -0.5392 -4.1962 2.8192 41 1 -0.4215 -6.1207 4.4846 42 1 -0.7709 -8.5417 4.7340 43 1 -0.8429 -9.9926 2.7548 44 1 0.7258 -11.8939 1.4420 45 1 -0.2158 -6.5531 0.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456761655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:22 Heat of formation + Delta-G solvation = 10.855053 kcal Electronic energy + Delta-G solvation = -27289.473995 eV Core-core repulsion = 23466.684412 eV Total energy + Delta-G solvation = -3822.789583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.90726 -41.31546 -39.16477 -37.53850 -36.11690 -34.78455 -34.72472 -33.41015 -31.70915 -30.51773 -29.68967 -28.51264 -28.34010 -27.20754 -24.98270 -23.30275 -22.68791 -21.70296 -21.06124 -20.88297 -19.45505 -18.64827 -18.12967 -17.69103 -17.27848 -16.79519 -16.64440 -16.40419 -15.79372 -15.28269 -14.98319 -14.91886 -14.56230 -14.41433 -14.29481 -14.01100 -13.96336 -13.80162 -13.65750 -13.57329 -13.50077 -13.16699 -13.05688 -12.83294 -12.60393 -12.38827 -12.27954 -12.25106 -12.19285 -11.93885 -11.55265 -11.48863 -11.16181 -10.79554 -10.75880 -10.47168 -10.06599 -9.32111 -8.68915 -8.55431 -6.36101 0.49747 0.91552 1.03539 1.21756 1.37084 1.47961 1.52022 1.83946 2.15653 2.22434 2.33982 2.78194 3.23393 3.53890 3.61188 3.75115 3.81501 4.00531 4.14166 4.28494 4.37591 4.43135 4.50092 4.58725 4.65623 4.65954 4.67611 4.70868 4.80165 4.84780 4.90718 5.02823 5.09832 5.12799 5.16343 5.17275 5.20117 5.28163 5.32081 5.36804 5.49002 5.80686 5.90200 6.10458 6.15837 6.39142 6.70575 6.73390 6.97537 7.04335 7.31445 7.41721 8.39871 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.002624 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.061721 B =10668.230313 C =11312.278353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.027 3.973 3 N -0.398 5.398 4 O 0.081 5.919 5 C -0.024 4.024 6 C -0.078 4.078 7 C -0.202 4.202 8 C 0.013 3.987 9 H 0.082 0.918 10 C -0.149 4.149 11 C -0.121 4.121 12 C 0.501 3.499 13 O -0.556 6.556 14 N -0.660 5.660 15 C 0.154 3.846 16 C -0.246 4.246 17 C -0.096 4.096 18 C -0.194 4.194 19 C 0.085 3.915 20 C -0.501 4.501 21 H 0.066 0.934 22 C 0.032 3.968 23 N -0.834 5.834 24 Si 0.983 3.017 25 H -0.266 1.266 26 H -0.262 1.262 27 H -0.260 1.260 28 C -0.228 4.228 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.421 0.579 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.102 0.898 44 H 0.286 0.714 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 18.601 0.409 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 N -0.107 5.107 4 O 0.020 5.980 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.206 4.206 8 C -0.007 4.007 9 H 0.101 0.899 10 C -0.206 4.206 11 C -0.160 4.160 12 C 0.290 3.710 13 O -0.434 6.434 14 N -0.306 5.306 15 C 0.061 3.939 16 C -0.267 4.267 17 C -0.115 4.115 18 C -0.214 4.214 19 C 0.082 3.918 20 C -0.531 4.531 21 H 0.084 0.916 22 C -0.181 4.181 23 N -0.461 5.461 24 Si 0.804 3.196 25 H -0.191 1.191 26 H -0.186 1.186 27 H -0.184 1.184 28 C -0.250 4.250 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.259 0.741 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.505 19.248 -0.067 19.564 hybrid contribution -0.231 -1.295 -0.372 1.367 sum 3.274 17.953 -0.440 18.254 Atomic orbital electron populations 1.20481 0.84470 1.04569 1.04764 1.23824 0.99979 0.88054 1.01324 1.73814 0.89780 1.24929 1.22214 1.84764 1.21494 1.23252 1.68503 1.24816 0.99369 0.83282 1.01258 1.20552 0.88985 0.98593 1.05325 1.20906 0.91943 0.96784 1.10951 1.19022 0.98855 0.88021 0.94795 0.89940 1.21930 1.00571 1.02059 0.96019 1.21765 1.03101 0.89739 1.01439 1.21436 0.77520 0.92066 0.79958 1.90744 1.51958 1.60479 1.40174 1.43401 1.46980 1.05358 1.34866 1.17521 0.99789 0.83081 0.93511 1.20522 1.16430 0.95046 0.94713 1.20844 0.99442 0.93535 0.97692 1.21351 1.07908 0.99396 0.92701 1.17875 0.88231 0.91730 0.93918 1.19746 1.40910 0.95958 0.96496 0.91614 1.26705 0.91841 0.99842 0.99729 1.69861 1.29036 1.18019 1.29228 0.85188 0.79540 0.77137 0.77777 1.19124 1.18617 1.18363 1.21098 1.12749 0.94238 0.96866 0.88280 0.90110 0.88889 0.88184 0.88056 0.88558 0.91524 0.92683 0.92549 0.86079 0.86542 0.74091 0.85075 0.86183 0.87969 0.90364 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.15 71.24 0.65 -0.56 16 2 C 0.03 0.55 7.21 43.58 0.31 0.86 16 3 N -0.40 -9.53 12.07 -49.56 -0.60 -10.13 16 4 O 0.08 1.81 11.20 71.57 0.80 2.61 16 5 C -0.02 -0.45 7.49 25.04 0.19 -0.26 16 6 C -0.08 -0.93 10.27 71.24 0.73 -0.20 16 7 C -0.20 -4.01 4.94 -19.74 -0.10 -4.11 16 8 C 0.01 0.27 2.30 -11.54 -0.03 0.24 16 9 H 0.08 1.94 6.80 -2.38 -0.02 1.93 16 10 C -0.15 -3.52 8.94 71.98 0.64 -2.88 16 11 C -0.12 -2.36 4.95 29.85 0.15 -2.22 16 12 C 0.50 15.51 7.35 87.66 0.64 16.16 16 13 O -0.56 -23.08 11.46 -3.05 -0.03 -23.11 16 14 N -0.66 -20.48 5.33 -303.65 -1.62 -22.10 16 15 C 0.15 6.58 6.28 38.10 0.24 6.82 16 16 C -0.25 -9.95 9.97 22.58 0.23 -9.73 16 17 C -0.10 -4.33 10.02 22.20 0.22 -4.11 16 18 C -0.19 -10.35 8.65 22.75 0.20 -10.15 16 19 C 0.09 4.82 5.55 -21.31 -0.12 4.70 16 20 C -0.50 -28.74 9.06 23.46 0.21 -28.53 16 21 H 0.07 3.72 7.87 -2.91 -0.02 3.70 16 22 C 0.03 1.69 5.26 85.25 0.45 2.14 16 23 N -0.83 -45.45 10.85 21.83 0.24 -45.22 16 24 Si 0.98 40.28 29.57 68.60 2.03 42.31 16 25 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 28 C -0.23 -11.85 8.43 22.85 0.19 -11.66 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.18 5.15 -2.39 -0.01 1.17 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 1.16 7.14 -2.39 -0.02 1.14 16 35 H 0.07 1.32 5.97 -2.38 -0.01 1.31 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 38 H 0.12 1.75 6.10 -2.39 -0.01 1.74 16 39 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.42 9.00 8.82 -92.71 -0.82 8.18 16 41 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.10 5.73 6.23 -2.92 -0.02 5.71 16 44 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 45 H 0.09 5.13 6.26 -2.91 -0.02 5.11 16 Total: -1.00 -73.28 367.10 5.85 -67.43 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.22 Total: 31.70 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 4.82 Total: -43.48 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.98 Total: -77.45 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.77 Total: -20.50 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -73.28 5.85 -67.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456761655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.280 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds