Wall clock time and date at job start Tue Mar 31 2020 15:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31500 * 119.70499 * 2 1 4 4 C 1.33074 * 121.59282 * 180.28820 * 3 2 1 5 5 C 1.47400 * 119.59436 * 179.74635 * 4 3 2 6 6 C 1.36203 * 125.94726 * 359.70443 * 5 4 3 7 7 C 1.40698 * 106.72581 * 179.75084 * 6 5 4 8 8 C 1.34909 * 107.06278 * 0.40183 * 7 6 5 9 9 O 1.34169 * 108.70661 * 359.59030 * 8 7 6 10 10 C 1.39863 * 120.81699 * 359.46852 * 4 3 2 11 11 C 1.36867 * 119.32452 * 0.25927 * 10 4 3 12 12 C 1.39697 * 119.70174 * 179.75709 * 2 1 3 13 13 C 1.47568 * 120.43083 * 359.96309 * 12 2 1 14 14 O 1.21590 * 119.99924 * 353.75944 * 13 12 2 15 15 N 1.34773 * 119.99864 * 173.76233 * 13 12 2 16 16 C 1.46500 * 120.00117 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47332 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47440 * 300.00008 * 17 16 15 19 19 C 1.53003 * 109.46934 * 60.00398 * 17 16 15 20 20 C 1.50704 * 109.47108 * 179.97438 * 17 16 15 21 21 H 1.07996 * 120.00020 * 0.02562 * 20 17 16 22 22 C 1.37874 * 120.00108 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99867 * 359.97438 * 22 20 17 24 24 Si 1.86795 * 120.00143 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47064 * 60.00146 * 24 22 20 26 26 H 1.48500 * 109.47393 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47405 * 299.99803 * 24 22 20 28 28 H 1.08995 * 109.47452 * 263.63716 * 1 2 3 29 29 H 1.09003 * 109.46638 * 23.63143 * 1 2 3 30 30 H 1.08997 * 109.47222 * 143.63062 * 1 2 3 31 31 H 1.07997 * 126.64108 * 359.97325 * 6 5 4 32 32 H 1.08000 * 126.47419 * 180.28112 * 7 6 5 33 33 H 1.07999 * 125.64527 * 179.85774 * 8 7 6 34 34 H 1.07999 * 120.33532 * 180.28091 * 10 4 3 35 35 H 1.08006 * 120.73272 * 179.97438 * 11 10 4 36 36 H 0.97001 * 120.00517 * 359.97438 * 15 13 12 37 37 H 1.09002 * 109.46960 * 300.00267 * 16 15 13 38 38 H 1.09001 * 109.46905 * 59.99669 * 16 15 13 39 39 H 1.09002 * 109.46744 * 59.99711 * 18 17 16 40 40 H 1.08993 * 109.47208 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.46995 * 300.00207 * 18 17 16 42 42 H 1.08999 * 109.47337 * 60.00091 * 19 17 16 43 43 H 1.09005 * 109.47128 * 180.02562 * 19 17 16 44 44 H 1.08998 * 109.46565 * 299.99344 * 19 17 16 45 45 H 0.97000 * 120.00013 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1422 0.0000 4 6 3.4887 1.1860 -0.0057 5 6 4.1740 2.4910 -0.0111 6 6 3.5695 3.7116 -0.0166 7 6 4.5972 4.6724 -0.0146 8 6 5.7672 4.0007 -0.0170 9 8 5.5076 2.6844 -0.0114 10 6 4.2444 0.0092 -0.0008 11 6 3.6025 -1.1996 0.0046 12 6 2.1992 -1.2134 0.0051 13 6 1.4643 -2.4931 0.0114 14 8 0.2539 -2.4985 0.1266 15 7 2.1349 -3.6558 -0.1105 16 6 1.4054 -4.9263 -0.1037 17 6 2.3948 -6.0833 -0.2565 18 6 3.1510 -5.9365 -1.5784 19 6 3.3897 -6.0603 0.9056 20 6 1.6444 -7.3902 -0.2489 21 1 0.5694 -7.3950 -0.1459 22 6 2.3303 -8.5797 -0.3735 23 7 3.6394 -8.5738 -0.4995 24 14 1.4002 -10.1996 -0.3648 25 1 0.4349 -10.2222 -1.4932 26 1 2.3604 -11.3226 -0.5130 27 1 0.6657 -10.3418 0.9178 28 1 -0.3634 -0.1139 1.0213 29 1 -0.3633 0.9415 -0.4120 30 1 -0.3633 -0.8275 -0.6094 31 1 2.5069 3.9045 -0.0182 32 1 4.4731 5.7453 -0.0134 33 1 6.7500 4.4484 -0.0185 34 1 5.3235 0.0539 -0.0009 35 1 4.1636 -2.1225 0.0080 36 1 3.1005 -3.6515 -0.2027 37 1 0.8662 -5.0306 0.8378 38 1 0.6968 -4.9428 -0.9319 39 1 3.6938 -4.9913 -1.5834 40 1 3.8555 -6.7610 -1.6874 41 1 2.4422 -5.9529 -2.4063 42 1 2.8509 -6.1650 1.8473 43 1 4.0949 -6.8844 0.7966 44 1 3.9325 -5.1151 0.9005 45 1 4.1220 -9.4106 -0.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:42 Heat of formation + Delta-G solvation = 12.068489 kcal Electronic energy + Delta-G solvation = -27073.629505 eV Core-core repulsion = 23250.892541 eV Total energy + Delta-G solvation = -3822.736964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.86302 -40.75443 -38.87294 -36.47438 -33.95483 -33.57021 -33.11182 -32.65059 -30.84899 -29.55292 -27.82318 -25.78555 -25.75292 -25.20230 -24.27022 -22.73889 -21.49950 -21.17972 -20.41820 -18.90357 -18.26321 -17.73082 -16.58837 -16.42439 -15.97950 -15.84976 -15.26188 -15.05600 -14.75334 -14.29393 -14.14217 -13.91821 -13.38494 -13.19818 -13.14761 -12.95656 -12.86888 -12.74179 -12.50363 -12.48234 -12.26009 -11.90688 -11.43737 -11.23681 -10.88878 -10.76016 -10.45120 -10.36050 -10.24033 -10.14428 -9.97784 -9.69412 -9.66041 -9.51501 -9.23603 -8.84822 -8.56898 -8.40603 -8.23857 -6.05783 -4.16036 0.09953 1.04391 1.55970 2.30307 2.36509 3.09831 3.27999 3.32516 3.35393 3.54849 3.77445 4.01794 4.28165 4.37142 4.54125 4.65616 4.70110 4.72325 4.89968 5.06762 5.21078 5.38937 5.45361 5.54708 5.62687 5.67127 5.80558 5.85513 5.95669 6.12377 6.16019 6.17640 6.26168 6.44132 6.48079 6.70675 6.73428 6.75313 6.86546 6.93164 6.96005 7.29369 7.50022 7.62405 7.65408 7.92125 7.95674 8.08982 8.33115 8.53659 8.84232 9.49960 10.95662 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002350 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.985063 B =11910.334294 C =12803.414729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.197 3.803 3 N -0.476 5.476 4 C 0.221 3.779 5 C 0.013 3.987 6 C -0.147 4.147 7 C -0.220 4.220 8 C -0.023 4.023 9 O -0.167 6.167 10 C -0.168 4.168 11 C -0.035 4.035 12 C -0.180 4.180 13 C 0.551 3.449 14 O -0.537 6.537 15 N -0.708 5.708 16 C 0.131 3.869 17 C 0.055 3.945 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.506 4.506 21 H 0.058 0.942 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.208 0.792 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.005 0.995 40 H 0.086 0.914 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.086 0.914 44 H 0.004 0.996 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 22.374 0.589 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.057 3.943 3 N -0.186 5.186 4 C 0.085 3.915 5 C -0.037 4.037 6 C -0.167 4.167 7 C -0.239 4.239 8 C -0.092 4.092 9 O -0.062 6.062 10 C -0.188 4.188 11 C -0.061 4.061 12 C -0.186 4.186 13 C 0.337 3.663 14 O -0.417 6.417 15 N -0.358 5.358 16 C 0.009 3.991 17 C 0.055 3.945 18 C -0.189 4.189 19 C -0.189 4.189 20 C -0.545 4.545 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.524 5.524 24 Si 0.722 3.278 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.225 0.775 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.233 0.767 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.024 0.976 40 H 0.105 0.895 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.105 0.895 44 H 0.023 0.977 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.890 22.699 0.651 23.039 hybrid contribution 0.675 -1.412 -0.009 1.565 sum 4.565 21.287 0.642 21.780 Atomic orbital electron populations 1.21068 0.86865 1.03929 1.04517 1.21429 0.97526 0.85741 0.89565 1.67442 1.07294 1.29420 1.14489 1.18386 0.89066 0.88871 0.95210 1.19723 0.80337 0.93508 1.10141 1.21972 1.01178 0.90567 1.03028 1.21873 0.92129 1.01070 1.08872 1.24269 1.00706 0.79551 1.04639 1.84020 1.23904 1.27063 1.71232 1.21730 1.01779 0.91962 1.03320 1.21512 0.93281 0.98899 0.92403 1.21073 0.94313 0.95745 1.07436 1.17876 0.87189 0.83422 0.77808 1.90712 1.13392 1.87104 1.50486 1.46267 1.11236 1.06463 1.71861 1.21796 0.95492 0.80970 1.00823 1.18368 0.91919 0.91453 0.92782 1.21843 1.00375 0.98996 0.97716 1.21846 1.00207 0.99145 0.97722 1.20922 0.93377 0.89786 1.50402 0.92415 1.24882 0.94893 0.98998 0.94751 1.69788 1.06201 1.26664 1.49796 0.86617 0.79563 0.82910 0.78680 1.20263 1.21337 1.20262 0.89725 0.91383 0.87430 0.82395 0.82910 0.77503 0.83795 0.83752 0.76727 0.92340 0.92345 0.97640 0.89499 0.95325 0.95314 0.89492 0.97680 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 8.86 36.01 0.32 -1.08 16 2 C 0.20 2.80 6.82 -82.19 -0.56 2.24 16 3 N -0.48 -6.56 9.94 -5.81 -0.06 -6.61 16 4 C 0.22 2.83 6.74 -82.99 -0.56 2.27 16 5 C 0.01 0.15 7.03 -36.59 -0.26 -0.11 16 6 C -0.15 -1.52 10.58 -39.38 -0.42 -1.93 16 7 C -0.22 -1.74 10.88 -39.83 -0.43 -2.17 16 8 C -0.02 -0.17 12.08 29.55 0.36 0.19 16 9 O -0.17 -1.71 10.37 4.81 0.05 -1.66 16 10 C -0.17 -1.94 9.69 -39.47 -0.38 -2.32 16 11 C -0.04 -0.43 9.57 -39.29 -0.38 -0.80 16 12 C -0.18 -2.61 5.89 -104.76 -0.62 -3.23 16 13 C 0.55 9.34 7.69 -12.46 -0.10 9.24 16 14 O -0.54 -10.29 13.35 5.29 0.07 -10.22 16 15 N -0.71 -12.15 4.91 -61.34 -0.30 -12.46 16 16 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 17 C 0.06 1.24 0.50 -155.66 -0.08 1.17 16 18 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 19 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 20 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 22 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 23 N -0.89 -23.16 9.35 55.43 0.52 -22.64 16 24 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 1.57 5.85 -51.93 -0.30 1.26 16 31 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 1.35 7.88 -52.49 -0.41 0.93 16 35 H 0.14 1.49 6.55 -52.48 -0.34 1.14 16 36 H 0.40 6.12 4.29 -40.82 -0.17 5.95 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 40 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -28.81 368.44 -8.00 -36.81 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.93 Total: 6.45 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.89 Total: -10.61 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.16 Total: -41.71 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.12 Total: -11.88 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.81 -8.00 -36.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.875 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds