Wall clock time and date at job start Tue Mar 31 2020 15:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31500 * 119.70499 * 2 1 4 4 C 1.33074 * 121.59282 * 180.28820 * 3 2 1 5 5 C 1.47400 * 119.59436 * 179.74635 * 4 3 2 6 6 C 1.36203 * 125.94726 * 359.70443 * 5 4 3 7 7 C 1.40698 * 106.72581 * 179.75084 * 6 5 4 8 8 C 1.34909 * 107.06278 * 0.40183 * 7 6 5 9 9 O 1.34169 * 108.70661 * 359.59030 * 8 7 6 10 10 C 1.39863 * 120.81699 * 359.46852 * 4 3 2 11 11 C 1.36867 * 119.32452 * 0.25927 * 10 4 3 12 12 C 1.39697 * 119.70174 * 179.75709 * 2 1 3 13 13 C 1.47568 * 120.43083 * 359.96309 * 12 2 1 14 14 O 1.21590 * 119.99924 * 353.75944 * 13 12 2 15 15 N 1.34773 * 119.99864 * 173.76233 * 13 12 2 16 16 C 1.46500 * 120.00117 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47332 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47440 * 300.00008 * 17 16 15 19 19 C 1.53003 * 109.46934 * 60.00398 * 17 16 15 20 20 C 1.50704 * 109.47108 * 179.97438 * 17 16 15 21 21 H 1.07996 * 120.00020 * 0.02562 * 20 17 16 22 22 C 1.37874 * 120.00108 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99867 * 359.97438 * 22 20 17 24 24 Si 1.86795 * 120.00143 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47064 * 60.00146 * 24 22 20 26 26 H 1.48500 * 109.47393 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47405 * 299.99803 * 24 22 20 28 28 H 1.08995 * 109.47452 * 263.63716 * 1 2 3 29 29 H 1.09003 * 109.46638 * 23.63143 * 1 2 3 30 30 H 1.08997 * 109.47222 * 143.63062 * 1 2 3 31 31 H 1.07997 * 126.64108 * 359.97325 * 6 5 4 32 32 H 1.08000 * 126.47419 * 180.28112 * 7 6 5 33 33 H 1.07999 * 125.64527 * 179.85774 * 8 7 6 34 34 H 1.07999 * 120.33532 * 180.28091 * 10 4 3 35 35 H 1.08006 * 120.73272 * 179.97438 * 11 10 4 36 36 H 0.97001 * 120.00517 * 359.97438 * 15 13 12 37 37 H 1.09002 * 109.46960 * 300.00267 * 16 15 13 38 38 H 1.09001 * 109.46905 * 59.99669 * 16 15 13 39 39 H 1.09002 * 109.46744 * 59.99711 * 18 17 16 40 40 H 1.08993 * 109.47208 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.46995 * 300.00207 * 18 17 16 42 42 H 1.08999 * 109.47337 * 60.00091 * 19 17 16 43 43 H 1.09005 * 109.47128 * 180.02562 * 19 17 16 44 44 H 1.08998 * 109.46565 * 299.99344 * 19 17 16 45 45 H 0.97000 * 120.00013 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1422 0.0000 4 6 3.4887 1.1860 -0.0057 5 6 4.1740 2.4910 -0.0111 6 6 3.5695 3.7116 -0.0166 7 6 4.5972 4.6724 -0.0146 8 6 5.7672 4.0007 -0.0170 9 8 5.5076 2.6844 -0.0114 10 6 4.2444 0.0092 -0.0008 11 6 3.6025 -1.1996 0.0046 12 6 2.1992 -1.2134 0.0051 13 6 1.4643 -2.4931 0.0114 14 8 0.2539 -2.4985 0.1266 15 7 2.1349 -3.6558 -0.1105 16 6 1.4054 -4.9263 -0.1037 17 6 2.3948 -6.0833 -0.2565 18 6 3.1510 -5.9365 -1.5784 19 6 3.3897 -6.0603 0.9056 20 6 1.6444 -7.3902 -0.2489 21 1 0.5694 -7.3950 -0.1459 22 6 2.3303 -8.5797 -0.3735 23 7 3.6394 -8.5738 -0.4995 24 14 1.4002 -10.1996 -0.3648 25 1 0.4349 -10.2222 -1.4932 26 1 2.3604 -11.3226 -0.5130 27 1 0.6657 -10.3418 0.9178 28 1 -0.3634 -0.1139 1.0213 29 1 -0.3633 0.9415 -0.4120 30 1 -0.3633 -0.8275 -0.6094 31 1 2.5069 3.9045 -0.0182 32 1 4.4731 5.7453 -0.0134 33 1 6.7500 4.4484 -0.0185 34 1 5.3235 0.0539 -0.0009 35 1 4.1636 -2.1225 0.0080 36 1 3.1005 -3.6515 -0.2027 37 1 0.8662 -5.0306 0.8378 38 1 0.6968 -4.9428 -0.9319 39 1 3.6938 -4.9913 -1.5834 40 1 3.8555 -6.7610 -1.6874 41 1 2.4422 -5.9529 -2.4063 42 1 2.8509 -6.1650 1.8473 43 1 4.0949 -6.8844 0.7966 44 1 3.9325 -5.1151 0.9005 45 1 4.1220 -9.4106 -0.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457986110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:42 Heat of formation + Delta-G solvation = -3.525093 kcal Electronic energy + Delta-G solvation = -27074.305694 eV Core-core repulsion = 23250.892541 eV Total energy + Delta-G solvation = -3823.413152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.55402 -41.84975 -40.17402 -38.14052 -35.34411 -34.45487 -34.20580 -33.69063 -32.55217 -30.37018 -28.92341 -27.56023 -27.43260 -26.75478 -25.45287 -23.62780 -22.31330 -22.19799 -21.49047 -20.61006 -19.08905 -18.97903 -17.76697 -17.68258 -17.15843 -16.67143 -16.61853 -16.52472 -16.34316 -15.52695 -15.37608 -14.91711 -14.74986 -14.48021 -14.41408 -14.07090 -13.95267 -13.86148 -13.53414 -13.49125 -13.35721 -13.19039 -13.08650 -12.96420 -12.66719 -12.60971 -12.24603 -12.12497 -11.48263 -11.27254 -11.24428 -11.07661 -10.95058 -10.72322 -10.57004 -10.51807 -10.38436 -9.96105 -9.10613 -8.01427 -6.16737 -0.86559 0.08265 0.77528 1.44935 1.46443 1.52501 1.58133 1.63980 1.94163 2.19096 2.48700 2.71453 3.21770 3.22426 3.37847 3.57224 3.63505 3.86935 4.03001 4.06161 4.24373 4.43719 4.46215 4.52658 4.58818 4.69899 4.72749 4.75522 4.87579 4.96275 4.99521 5.01850 5.05352 5.06631 5.10781 5.16069 5.20107 5.35779 5.47142 5.52231 5.58004 5.67698 5.68547 6.03307 6.15898 6.21800 6.43982 6.54573 6.67305 6.87070 7.19450 7.50787 8.97258 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002350 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.985063 B =11910.334294 C =12803.414729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.188 3.812 3 N -0.489 5.489 4 C 0.219 3.781 5 C -0.023 4.023 6 C -0.149 4.149 7 C -0.232 4.232 8 C -0.004 4.004 9 O -0.176 6.176 10 C -0.166 4.166 11 C -0.027 4.027 12 C -0.201 4.201 13 C 0.554 3.446 14 O -0.564 6.564 15 N -0.703 5.703 16 C 0.148 3.852 17 C 0.050 3.950 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.527 4.527 21 H 0.046 0.954 22 C 0.028 3.972 23 N -0.899 5.899 24 Si 0.944 3.056 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.277 1.277 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.252 0.748 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.407 0.593 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 24.515 0.613 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.049 3.951 3 N -0.200 5.200 4 C 0.083 3.917 5 C -0.072 4.072 6 C -0.170 4.170 7 C -0.251 4.251 8 C -0.072 4.072 9 O -0.072 6.072 10 C -0.186 4.186 11 C -0.052 4.052 12 C -0.206 4.206 13 C 0.342 3.658 14 O -0.446 6.446 15 N -0.354 5.354 16 C 0.025 3.975 17 C 0.050 3.950 18 C -0.180 4.180 19 C -0.180 4.180 20 C -0.565 4.565 21 H 0.064 0.936 22 C -0.172 4.172 23 N -0.537 5.537 24 Si 0.771 3.229 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.203 1.203 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.173 0.827 32 H 0.196 0.804 33 H 0.268 0.732 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.245 0.755 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.882 24.849 0.674 25.545 hybrid contribution 0.138 -1.863 -0.016 1.868 sum 6.020 22.986 0.658 23.770 Atomic orbital electron populations 1.20969 0.86750 1.03942 1.04148 1.21537 0.97900 0.86006 0.89649 1.67461 1.08101 1.29023 1.15447 1.18756 0.88934 0.90210 0.93819 1.19646 0.81182 0.93266 1.13137 1.22218 1.01774 0.91141 1.01866 1.22214 0.91560 1.02129 1.09164 1.25232 1.02395 0.78358 1.01264 1.84018 1.23067 1.28649 1.71438 1.21973 1.02918 0.91129 1.02537 1.21722 0.92269 1.00110 0.91102 1.20839 0.95274 0.94226 1.10244 1.18201 0.86945 0.83984 0.76693 1.90703 1.14759 1.87567 1.51557 1.46032 1.11530 1.05500 1.72356 1.21348 0.94831 0.81875 0.99488 1.18369 0.92268 0.90969 0.93412 1.21689 0.99700 0.99689 0.96932 1.21692 0.99542 0.99912 0.96873 1.21230 0.93203 0.91597 1.50513 0.93571 1.25444 0.95639 1.01340 0.94789 1.69895 1.06807 1.26997 1.50039 0.85836 0.78555 0.80123 0.78398 1.20302 1.20972 1.20284 0.89870 0.89930 0.89118 0.82699 0.80388 0.73173 0.81338 0.81697 0.75543 0.93751 0.93762 0.94487 0.91827 0.96234 0.96197 0.91830 0.94433 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.70 8.86 71.24 0.63 -2.07 16 2 C 0.19 5.33 6.82 42.96 0.29 5.63 16 3 N -0.49 -13.26 9.94 -172.30 -1.71 -14.97 16 4 C 0.22 5.35 6.74 41.76 0.28 5.63 16 5 C -0.02 -0.49 7.03 24.21 0.17 -0.32 16 6 C -0.15 -2.85 10.58 22.40 0.24 -2.62 16 7 C -0.23 -2.96 10.88 22.11 0.24 -2.72 16 8 C 0.00 -0.04 12.08 67.05 0.81 0.77 16 9 O -0.18 -3.13 10.37 -5.70 -0.06 -3.19 16 10 C -0.17 -3.49 9.69 22.34 0.22 -3.27 16 11 C -0.03 -0.60 9.57 22.46 0.21 -0.38 16 12 C -0.20 -5.68 5.89 -19.95 -0.12 -5.80 16 13 C 0.55 18.71 7.69 86.71 0.67 19.38 16 14 O -0.56 -22.09 13.35 -4.00 -0.05 -22.14 16 15 N -0.70 -23.59 4.91 -466.24 -2.29 -25.88 16 16 C 0.15 6.07 4.50 86.38 0.39 6.46 16 17 C 0.05 2.26 0.50 -52.93 -0.03 2.24 16 18 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 19 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 20 C -0.53 -27.26 8.01 25.60 0.21 -27.06 16 21 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 22 C 0.03 1.44 5.15 84.65 0.44 1.87 16 23 N -0.90 -47.16 9.35 21.45 0.20 -46.96 16 24 Si 0.94 42.12 29.54 68.60 2.03 44.14 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.74 5.85 -2.39 -0.01 2.73 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.25 0.19 8.06 -2.91 -0.02 0.16 16 34 H 0.17 2.64 7.88 -2.91 -0.02 2.62 16 35 H 0.17 2.91 6.55 -2.91 -0.02 2.89 16 36 H 0.41 11.75 4.29 -92.71 -0.40 11.35 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 40 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 3.06 6.07 -2.38 -0.01 3.04 16 44 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 45 H 0.26 13.22 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -63.17 368.44 4.55 -58.62 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.63 Total: 22.02 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 5.81 Total: -11.64 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.80 Total: -87.82 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.11 Total: -25.33 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -63.17 4.55 -58.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.099 kcal (2) G-P(sol) polarization free energy of solvation -63.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds