Wall clock time and date at job start Tue Mar 31 2020 15:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36316 * 120.84388 * 2 1 4 4 C 1.40091 * 119.89732 * 180.26247 * 3 2 1 5 5 O 1.35565 * 119.22209 * 179.73909 * 4 3 2 6 6 N 1.31493 * 121.55210 * 359.46076 * 4 3 2 7 7 C 1.33830 * 121.29009 * 0.27952 * 6 4 3 8 8 C 1.40409 * 120.82032 * 179.97438 * 7 6 4 9 9 C 1.38451 * 119.54230 * 180.02562 * 8 7 6 10 10 C 1.47877 * 119.72111 * 180.02562 * 9 8 7 11 11 O 1.21551 * 120.00162 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99922 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00120 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47078 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47232 * 299.99748 * 14 13 12 16 16 C 1.53000 * 109.47306 * 60.00057 * 14 13 12 17 17 C 1.50703 * 109.47035 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99941 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00184 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99880 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00085 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.47373 * 60.00272 * 21 19 17 23 23 H 1.48503 * 109.47315 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47137 * 300.00321 * 21 19 17 25 25 C 1.40537 * 120.55739 * 0.02562 * 9 8 7 26 26 C 1.35852 * 120.72650 * 0.02562 * 25 9 8 27 27 C 1.40496 * 120.00090 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47151 * 270.23857 * 1 2 3 29 29 H 1.08996 * 109.46957 * 30.23975 * 1 2 3 30 30 H 1.09001 * 109.46469 * 150.24296 * 1 2 3 31 31 H 1.08000 * 120.05077 * 0.02562 * 3 2 1 32 32 H 0.96700 * 114.00112 * 269.73216 * 5 4 3 33 33 H 1.08000 * 120.23294 * 0.02562 * 8 7 6 34 34 H 0.97002 * 120.00453 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47199 * 300.00091 * 13 12 10 36 36 H 1.09003 * 109.46920 * 59.99836 * 13 12 10 37 37 H 1.09005 * 109.46849 * 60.00246 * 15 14 13 38 38 H 1.09006 * 109.47125 * 180.02562 * 15 14 13 39 39 H 1.08997 * 109.47181 * 300.00065 * 15 14 13 40 40 H 1.09000 * 109.47068 * 59.99978 * 16 14 13 41 41 H 1.09006 * 109.47149 * 179.97438 * 16 14 13 42 42 H 1.08994 * 109.46675 * 299.99767 * 16 14 13 43 43 H 0.97003 * 119.99718 * 179.97438 * 20 19 17 44 44 H 1.08008 * 119.63728 * 180.02562 * 25 9 8 45 45 H 1.08002 * 120.00317 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2059 1.1704 0.0000 4 6 3.6067 1.1472 -0.0056 5 8 4.2879 2.3193 -0.0109 6 7 4.2762 0.0155 -0.0003 7 6 3.6457 -1.1650 0.0050 8 6 4.3705 -2.3675 0.0101 9 6 3.6913 -3.5740 0.0150 10 6 4.4506 -4.8429 0.0209 11 8 5.6660 -4.8238 0.0219 12 7 3.7951 -6.0205 0.0252 13 6 4.5474 -7.2776 0.0316 14 6 3.5715 -8.4559 0.0348 15 6 2.6887 -8.3835 1.2824 16 6 2.6927 -8.3938 -1.2161 17 6 4.3453 -9.7490 0.0408 18 1 5.4252 -9.7321 0.0425 19 6 3.6747 -10.9537 0.0451 20 7 2.3598 -10.9743 0.0434 21 14 4.6340 -12.5566 0.0532 22 1 5.4873 -12.6168 1.2671 23 1 3.6868 -13.7003 0.0562 24 1 5.4905 -12.6270 -1.1579 25 6 2.2862 -3.6028 0.0144 26 6 1.5682 -2.4495 0.0085 27 6 2.2299 -1.2102 0.0035 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3632 -0.8922 -0.5101 31 1 1.6806 2.1140 0.0004 32 1 4.4856 2.6553 -0.8958 33 1 5.4504 -2.3516 0.0101 34 1 2.8252 -6.0357 0.0240 35 1 5.1760 -7.3294 -0.8574 36 1 5.1738 -7.3216 0.9226 37 1 2.1289 -7.4482 1.2776 38 1 1.9937 -9.2233 1.2849 39 1 3.3147 -8.4278 2.1735 40 1 3.3217 -8.4454 -2.1049 41 1 1.9977 -9.2336 -1.2140 42 1 2.1331 -7.4585 -1.2208 43 1 1.8880 -11.8219 0.0461 44 1 1.7715 -4.5524 0.0187 45 1 0.4888 -2.4853 0.0086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458045485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:11 Heat of formation + Delta-G solvation = -29.987437 kcal Electronic energy + Delta-G solvation = -27017.246639 eV Core-core repulsion = 23192.685993 eV Total energy + Delta-G solvation = -3824.560646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36356 -39.61730 -38.25704 -36.51499 -35.95902 -34.92556 -33.39033 -31.17881 -30.57307 -30.03145 -28.30331 -26.01000 -25.76808 -25.26320 -24.06293 -23.62715 -21.42392 -20.89936 -19.08596 -18.95504 -18.33106 -17.60125 -16.81759 -16.19252 -15.85074 -15.39550 -14.98687 -14.80572 -14.74256 -14.44546 -14.30025 -14.12700 -13.61100 -13.40102 -13.31040 -12.94581 -12.82655 -12.81381 -12.29560 -12.20710 -12.00668 -11.63927 -11.60736 -11.39979 -11.21849 -10.87394 -10.75203 -10.50407 -10.41831 -10.23377 -9.83463 -9.69794 -9.67571 -9.32290 -8.99195 -8.83464 -8.53143 -8.44951 -8.34097 -6.04647 -4.14683 -0.01420 0.31733 1.59348 2.23661 3.12590 3.29094 3.33328 3.33510 3.37264 3.58934 3.89029 4.08606 4.19489 4.37839 4.38332 4.62605 4.72781 4.80244 4.93424 4.96618 5.09457 5.13640 5.22295 5.28562 5.45524 5.58957 5.68082 5.74395 6.02122 6.08827 6.13358 6.20389 6.28536 6.42110 6.48514 6.72280 6.77087 6.89044 6.94389 6.97940 7.11360 7.31124 7.51627 7.57614 7.66612 7.95034 7.97365 8.10666 8.34850 8.57048 8.85612 9.51252 10.96828 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028282 B = 0.002332 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.782291 B =12005.441918 C =12796.277631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.011 4.011 3 C -0.187 4.187 4 C 0.341 3.659 5 O -0.483 6.483 6 N -0.490 5.490 7 C 0.145 3.855 8 C -0.033 4.033 9 C -0.101 4.101 10 C 0.545 3.455 11 O -0.542 6.542 12 N -0.707 5.707 13 C 0.130 3.870 14 C 0.056 3.944 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.090 4.090 26 C -0.099 4.099 27 C -0.097 4.097 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.403 0.597 33 H 0.152 0.848 34 H 0.398 0.602 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.005 0.995 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.086 0.914 42 H 0.005 0.995 43 H 0.261 0.739 44 H 0.136 0.864 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 23.016 -1.785 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.019 4.019 3 C -0.208 4.208 4 C 0.147 3.853 5 O -0.290 6.290 6 N -0.210 5.210 7 C 0.025 3.975 8 C -0.052 4.052 9 C -0.106 4.106 10 C 0.330 3.670 11 O -0.421 6.421 12 N -0.358 5.358 13 C 0.008 3.992 14 C 0.055 3.945 15 C -0.190 4.190 16 C -0.189 4.189 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.108 4.108 26 C -0.117 4.117 27 C -0.099 4.099 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.261 0.739 33 H 0.170 0.830 34 H 0.234 0.766 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.153 0.847 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.188 22.748 -1.182 23.605 hybrid contribution -0.702 -0.720 -0.445 1.100 sum -6.890 22.028 -1.627 23.138 Atomic orbital electron populations 1.20921 0.89355 1.03952 1.03545 1.20106 0.96909 0.91443 0.93430 1.21725 0.93815 0.99613 1.05664 1.19280 0.87061 0.85023 0.93947 1.84747 1.77085 1.33092 1.34057 1.67474 1.41081 0.97662 1.14783 1.18355 0.89410 0.90908 0.98877 1.21220 1.01346 0.88443 0.94219 1.20141 0.93721 0.94085 1.02674 1.18170 0.87375 0.83678 0.77750 1.90763 1.13326 1.87524 1.50487 1.46262 1.10805 1.06156 1.72576 1.21803 0.95153 0.81399 1.00832 1.18360 0.92035 0.91212 0.92855 1.21848 1.00163 0.99289 0.97655 1.21846 1.00160 0.99298 0.97634 1.20937 0.92849 0.89705 1.51013 0.92426 1.24874 0.94904 0.98961 0.94741 1.69787 1.06279 1.25936 1.50487 0.86622 0.79703 0.82759 0.78713 1.20260 1.21332 1.20268 1.21090 0.92817 0.99238 0.97679 1.20875 1.00285 0.90578 0.99971 1.18809 0.93747 0.94423 1.02929 0.89776 0.90471 0.90217 0.83909 0.73913 0.83040 0.76566 0.92378 0.92375 0.97589 0.89492 0.95323 0.95328 0.89496 0.97596 0.92928 0.84667 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.58 36.01 0.34 -0.26 16 2 C -0.01 -0.10 5.92 -104.28 -0.62 -0.71 16 3 C -0.19 -1.56 9.64 -39.58 -0.38 -1.94 16 4 C 0.34 3.66 7.72 -17.00 -0.13 3.53 16 5 O -0.48 -4.23 13.55 -18.39 -0.25 -4.48 16 6 N -0.49 -6.64 10.36 -11.06 -0.11 -6.76 16 7 C 0.15 1.95 6.60 -84.87 -0.56 1.39 16 8 C -0.03 -0.47 9.55 -38.69 -0.37 -0.84 16 9 C -0.10 -1.46 5.87 -105.01 -0.62 -2.08 16 10 C 0.54 9.67 7.77 -12.31 -0.10 9.58 16 11 O -0.54 -11.49 16.30 5.32 0.09 -11.40 16 12 N -0.71 -12.44 4.91 -61.24 -0.30 -12.74 16 13 C 0.13 2.72 4.50 -4.04 -0.02 2.71 16 14 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 15 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 16 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 17 C -0.51 -13.06 8.01 -34.44 -0.28 -13.34 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -23.21 9.35 55.43 0.52 -22.69 16 21 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.09 -1.03 9.45 -39.57 -0.37 -1.40 16 26 C -0.10 -0.95 9.28 -39.59 -0.37 -1.32 16 27 C -0.10 -1.06 5.75 -106.71 -0.61 -1.67 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 30 H 0.08 0.34 6.49 -51.93 -0.34 0.00 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.40 1.42 9.06 45.56 0.41 1.83 16 33 H 0.15 2.32 7.61 -52.49 -0.40 1.92 16 34 H 0.40 6.16 4.15 -40.82 -0.17 5.99 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 42 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 43 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 44 H 0.14 1.34 6.35 -52.48 -0.33 1.00 16 45 H 0.14 0.90 6.40 -52.49 -0.34 0.57 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -31.65 365.58 -8.22 -39.87 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.00 Total: 5.90 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.64 Total: -8.71 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.10 Total: -42.18 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.16 Total: -15.89 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.65 -8.22 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.883 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds