Wall clock time and date at job start Tue Mar 31 2020 15:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36316 * 120.84388 * 2 1 4 4 C 1.40091 * 119.89732 * 180.26247 * 3 2 1 5 5 O 1.35565 * 119.22209 * 179.73909 * 4 3 2 6 6 N 1.31493 * 121.55210 * 359.46076 * 4 3 2 7 7 C 1.33830 * 121.29009 * 0.27952 * 6 4 3 8 8 C 1.40409 * 120.82032 * 179.97438 * 7 6 4 9 9 C 1.38451 * 119.54230 * 180.02562 * 8 7 6 10 10 C 1.47877 * 119.72111 * 180.02562 * 9 8 7 11 11 O 1.21551 * 120.00162 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99922 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00120 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47078 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47232 * 299.99748 * 14 13 12 16 16 C 1.53000 * 109.47306 * 60.00057 * 14 13 12 17 17 C 1.50703 * 109.47035 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99941 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00184 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99880 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00085 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.47373 * 60.00272 * 21 19 17 23 23 H 1.48503 * 109.47315 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47137 * 300.00321 * 21 19 17 25 25 C 1.40537 * 120.55739 * 0.02562 * 9 8 7 26 26 C 1.35852 * 120.72650 * 0.02562 * 25 9 8 27 27 C 1.40496 * 120.00090 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47151 * 270.23857 * 1 2 3 29 29 H 1.08996 * 109.46957 * 30.23975 * 1 2 3 30 30 H 1.09001 * 109.46469 * 150.24296 * 1 2 3 31 31 H 1.08000 * 120.05077 * 0.02562 * 3 2 1 32 32 H 0.96700 * 114.00112 * 269.73216 * 5 4 3 33 33 H 1.08000 * 120.23294 * 0.02562 * 8 7 6 34 34 H 0.97002 * 120.00453 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47199 * 300.00091 * 13 12 10 36 36 H 1.09003 * 109.46920 * 59.99836 * 13 12 10 37 37 H 1.09005 * 109.46849 * 60.00246 * 15 14 13 38 38 H 1.09006 * 109.47125 * 180.02562 * 15 14 13 39 39 H 1.08997 * 109.47181 * 300.00065 * 15 14 13 40 40 H 1.09000 * 109.47068 * 59.99978 * 16 14 13 41 41 H 1.09006 * 109.47149 * 179.97438 * 16 14 13 42 42 H 1.08994 * 109.46675 * 299.99767 * 16 14 13 43 43 H 0.97003 * 119.99718 * 179.97438 * 20 19 17 44 44 H 1.08008 * 119.63728 * 180.02562 * 25 9 8 45 45 H 1.08002 * 120.00317 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2059 1.1704 0.0000 4 6 3.6067 1.1472 -0.0056 5 8 4.2879 2.3193 -0.0109 6 7 4.2762 0.0155 -0.0003 7 6 3.6457 -1.1650 0.0050 8 6 4.3705 -2.3675 0.0101 9 6 3.6913 -3.5740 0.0150 10 6 4.4506 -4.8429 0.0209 11 8 5.6660 -4.8238 0.0219 12 7 3.7951 -6.0205 0.0252 13 6 4.5474 -7.2776 0.0316 14 6 3.5715 -8.4559 0.0348 15 6 2.6887 -8.3835 1.2824 16 6 2.6927 -8.3938 -1.2161 17 6 4.3453 -9.7490 0.0408 18 1 5.4252 -9.7321 0.0425 19 6 3.6747 -10.9537 0.0451 20 7 2.3598 -10.9743 0.0434 21 14 4.6340 -12.5566 0.0532 22 1 5.4873 -12.6168 1.2671 23 1 3.6868 -13.7003 0.0562 24 1 5.4905 -12.6270 -1.1579 25 6 2.2862 -3.6028 0.0144 26 6 1.5682 -2.4495 0.0085 27 6 2.2299 -1.2102 0.0035 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3632 -0.8922 -0.5101 31 1 1.6806 2.1140 0.0004 32 1 4.4856 2.6553 -0.8958 33 1 5.4504 -2.3516 0.0101 34 1 2.8252 -6.0357 0.0240 35 1 5.1760 -7.3294 -0.8574 36 1 5.1738 -7.3216 0.9226 37 1 2.1289 -7.4482 1.2776 38 1 1.9937 -9.2233 1.2849 39 1 3.3147 -8.4278 2.1735 40 1 3.3217 -8.4454 -2.1049 41 1 1.9977 -9.2336 -1.2140 42 1 2.1331 -7.4585 -1.2208 43 1 1.8880 -11.8219 0.0461 44 1 1.7715 -4.5524 0.0187 45 1 0.4888 -2.4853 0.0086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458045485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:10 Heat of formation + Delta-G solvation = -52.784412 kcal Electronic energy + Delta-G solvation = -27018.235190 eV Core-core repulsion = 23192.685993 eV Total energy + Delta-G solvation = -3825.549197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20487 -40.93939 -39.14652 -38.16001 -36.88298 -35.66869 -35.07411 -32.86769 -31.56097 -30.96374 -28.85763 -27.57965 -27.55088 -27.04840 -25.17281 -24.54150 -22.23628 -22.14991 -20.66510 -19.91364 -19.50866 -18.35867 -18.00577 -17.61108 -17.12743 -16.64587 -16.52531 -16.37070 -15.85418 -15.38804 -15.08729 -15.04581 -14.78432 -14.74388 -14.56695 -14.08787 -13.98643 -13.82434 -13.37783 -13.20466 -13.16954 -13.06025 -12.69614 -12.62611 -12.60482 -12.48635 -12.37238 -12.23970 -12.12794 -11.48411 -11.36223 -11.22125 -11.04784 -10.70793 -10.55362 -10.39355 -10.10144 -9.76681 -9.31792 -8.01895 -6.17115 -0.87312 -0.51285 0.74024 1.33198 1.44547 1.45951 1.52267 2.08901 2.14239 2.47128 2.57903 2.93879 3.21856 3.39175 3.40524 3.63888 3.72709 3.89056 3.99363 4.08808 4.36551 4.41563 4.45344 4.49612 4.57576 4.70945 4.77302 4.85377 4.87823 4.96602 5.01099 5.06062 5.10303 5.13923 5.15915 5.20154 5.30293 5.32873 5.45145 5.54188 5.64054 5.68294 5.68385 6.16648 6.21486 6.44030 6.54513 6.55724 6.81904 6.86005 7.16169 7.50276 8.96892 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028282 B = 0.002332 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.782291 B =12005.441918 C =12796.277631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.002 4.002 3 C -0.184 4.184 4 C 0.342 3.658 5 O -0.491 6.491 6 N -0.539 5.539 7 C 0.127 3.873 8 C -0.053 4.053 9 C -0.109 4.109 10 C 0.545 3.455 11 O -0.586 6.586 12 N -0.697 5.697 13 C 0.145 3.855 14 C 0.052 3.948 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.530 4.530 18 H 0.043 0.957 19 C 0.030 3.970 20 N -0.897 5.897 21 Si 0.943 3.057 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.278 1.278 25 C -0.101 4.101 26 C -0.074 4.074 27 C -0.107 4.107 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.424 0.576 33 H 0.125 0.875 34 H 0.411 0.589 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.155 0.845 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.297 25.141 -1.906 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.009 4.009 3 C -0.205 4.205 4 C 0.148 3.852 5 O -0.302 6.302 6 N -0.261 5.261 7 C 0.007 3.993 8 C -0.073 4.073 9 C -0.113 4.113 10 C 0.333 3.667 11 O -0.468 6.468 12 N -0.349 5.349 13 C 0.022 3.978 14 C 0.052 3.948 15 C -0.181 4.181 16 C -0.180 4.180 17 C -0.569 4.569 18 H 0.061 0.939 19 C -0.170 4.170 20 N -0.536 5.536 21 Si 0.770 3.230 22 H -0.204 1.204 23 H -0.207 1.207 24 H -0.204 1.204 25 C -0.119 4.119 26 C -0.092 4.092 27 C -0.109 4.109 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.195 0.805 32 H 0.286 0.714 33 H 0.143 0.857 34 H 0.250 0.750 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.172 0.828 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.718 24.894 -1.320 26.756 hybrid contribution 0.392 -1.163 -0.417 1.296 sum -9.327 23.730 -1.737 25.556 Atomic orbital electron populations 1.21078 0.86090 1.05682 1.04860 1.20558 0.98924 0.90157 0.91287 1.22058 0.92610 1.01273 1.04517 1.19692 0.88324 0.84688 0.92502 1.84693 1.77193 1.32250 1.36081 1.67392 1.42686 0.98617 1.17363 1.18378 0.90787 0.90315 0.99796 1.21077 1.00378 0.89711 0.96183 1.19845 0.95042 0.91770 1.04683 1.18704 0.87039 0.84675 0.76289 1.90733 1.15487 1.88209 1.52369 1.46010 1.11193 1.05063 1.72612 1.21382 0.94708 0.82490 0.99255 1.18356 0.92273 0.90492 0.93717 1.21700 0.99542 1.00157 0.96668 1.21695 0.99536 1.00171 0.96634 1.21232 0.92603 0.91598 1.51445 0.93853 1.25412 0.95727 1.01162 0.94686 1.69883 1.06822 1.26336 1.50521 0.85849 0.78678 0.80098 0.78353 1.20406 1.20713 1.20381 1.21225 0.91100 1.00975 0.98601 1.21311 1.02103 0.89110 0.96677 1.19102 0.92739 0.96315 1.02750 0.88371 0.88372 0.88994 0.80469 0.71396 0.85712 0.75018 0.94042 0.94097 0.94161 0.91612 0.96368 0.96326 0.91624 0.94153 0.92957 0.82798 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 9.58 71.24 0.68 0.18 16 2 C 0.00 -0.02 5.92 -19.64 -0.12 -0.14 16 3 C -0.18 -2.44 9.64 22.27 0.21 -2.22 16 4 C 0.34 6.87 7.72 85.19 0.66 7.53 16 5 O -0.49 -7.94 13.55 -88.72 -1.20 -9.14 16 6 N -0.54 -14.85 10.36 -302.21 -3.13 -17.98 16 7 C 0.13 3.44 6.60 40.21 0.27 3.70 16 8 C -0.05 -1.65 9.55 22.85 0.22 -1.43 16 9 C -0.11 -3.17 5.87 -20.11 -0.12 -3.29 16 10 C 0.54 19.96 7.77 86.80 0.67 20.64 16 11 O -0.59 -26.42 16.30 -3.88 -0.06 -26.48 16 12 N -0.70 -24.41 4.91 -465.94 -2.29 -26.70 16 13 C 0.15 6.22 4.50 86.38 0.39 6.61 16 14 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 15 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 16 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 17 C -0.53 -27.88 8.01 25.60 0.21 -27.67 16 18 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 19 C 0.03 1.57 5.15 84.65 0.44 2.01 16 20 N -0.90 -46.98 9.35 21.45 0.20 -46.78 16 21 Si 0.94 42.40 29.54 68.60 2.03 44.43 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C -0.10 -2.07 9.45 22.28 0.21 -1.86 16 26 C -0.07 -1.16 9.28 22.27 0.21 -0.95 16 27 C -0.11 -2.07 5.75 -21.22 -0.12 -2.19 16 28 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.10 0.07 8.10 -2.39 -0.02 0.06 16 30 H 0.09 0.21 6.49 -2.39 -0.02 0.19 16 31 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.42 2.35 9.06 -74.06 -0.67 1.68 16 33 H 0.12 4.34 7.61 -2.91 -0.02 4.32 16 34 H 0.41 11.95 4.15 -92.71 -0.38 11.57 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 38 H 0.07 3.15 6.07 -2.38 -0.01 3.14 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 42 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 43 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 44 H 0.15 2.51 6.35 -2.91 -0.02 2.49 16 45 H 0.18 1.25 6.40 -2.91 -0.02 1.24 16 Total: -1.00 -72.60 365.58 0.48 -72.12 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.00 Total: 16.71 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.94 Total: -6.18 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -5.22 Total: -91.45 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.26 Total: -35.62 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -72.60 0.48 -72.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.334 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds