Wall clock time and date at job start Tue Mar 31 2020 15:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46972 * 156.09904 * 3 2 1 5 5 C 1.36905 * 119.99952 * 264.55654 * 4 3 2 6 6 H 1.07996 * 119.99454 * 200.96683 * 5 4 3 7 7 C 1.39020 * 120.00041 * 20.96664 * 5 4 3 8 8 N 1.31384 * 120.00031 * 11.78865 * 7 5 4 9 9 Si 1.86798 * 119.99823 * 191.78093 * 7 5 4 10 10 H 1.48491 * 109.46994 * 84.98777 * 9 7 5 11 11 H 1.48503 * 109.46825 * 204.98499 * 9 7 5 12 12 H 1.48499 * 109.47182 * 324.98210 * 9 7 5 13 13 C 1.34771 * 119.99892 * 84.55742 * 4 3 2 14 14 O 1.21629 * 120.00186 * 179.97438 * 13 4 3 15 15 C 1.47422 * 120.00117 * 0.02562 * 13 4 3 16 16 C 1.40049 * 120.60345 * 270.00110 * 15 13 4 17 17 C 1.50707 * 120.82418 * 359.97288 * 16 15 13 18 18 C 1.38313 * 118.34584 * 179.70322 * 16 15 13 19 19 C 1.38372 * 119.46451 * 0.27259 * 18 16 15 20 20 C 1.50701 * 119.40037 * 179.97438 * 19 18 16 21 21 N 1.31890 * 121.19660 * 359.97438 * 19 18 16 22 22 C 1.32214 * 121.80764 * 0.02562 * 21 19 18 23 23 O 1.35438 * 119.80443 * 180.02562 * 22 21 19 24 24 C 1.42895 * 116.99535 * 0.02562 * 23 22 21 25 25 C 1.53778 * 113.61360 * 247.49293 * 24 23 22 26 26 C 1.53784 * 87.08456 * 220.02144 * 25 24 23 27 27 C 1.53781 * 87.07678 * 25.43381 * 26 25 24 28 28 H 4.40644 * 5.51437 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47434 * 36.10503 * 3 2 1 30 30 H 1.08997 * 109.47634 * 276.09957 * 3 2 1 31 31 H 0.96997 * 119.99960 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47139 * 269.72153 * 17 16 15 33 33 H 1.09001 * 109.46618 * 149.72406 * 17 16 15 34 34 H 1.08997 * 109.47056 * 29.72178 * 17 16 15 35 35 H 1.08002 * 120.27031 * 180.29401 * 18 16 15 36 36 H 1.09004 * 109.46773 * 90.00057 * 20 19 18 37 37 H 1.08994 * 109.47289 * 210.00172 * 20 19 18 38 38 H 1.09004 * 109.47411 * 330.00616 * 20 19 18 39 39 H 1.08997 * 112.85859 * 18.80809 * 24 23 22 40 40 H 1.08997 * 113.61563 * 334.57311 * 25 24 23 41 41 H 1.09007 * 113.61485 * 105.47333 * 25 24 23 42 42 H 1.08997 * 113.61780 * 270.88461 * 26 25 24 43 43 H 1.09007 * 113.60986 * 139.98175 * 26 25 24 44 44 H 1.09004 * 113.61268 * 220.01188 * 27 26 25 45 45 H 1.09000 * 113.69279 * 89.12753 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2637 -0.5596 5 6 3.4679 1.3414 -1.8850 6 1 4.1265 2.1244 -2.2307 7 6 2.9594 0.4125 -2.7857 8 7 1.9865 -0.3916 -2.4210 9 14 3.6593 0.3078 -4.5144 10 1 4.8602 -0.5655 -4.5101 11 1 2.6368 -0.2611 -5.4288 12 1 4.0371 1.6669 -4.9786 13 6 3.2535 2.3491 0.2303 14 8 3.6588 3.3976 -0.2342 15 6 2.8942 2.2652 1.6576 16 6 1.5887 2.5432 2.0817 17 6 0.5220 2.9345 1.0917 18 6 1.3015 2.4442 3.4311 19 6 2.3026 2.0827 4.3153 20 6 1.9882 1.9757 5.7853 21 7 3.5269 1.8300 3.8949 22 6 3.8552 1.9098 2.6167 23 8 5.1250 1.6410 2.2297 24 6 6.0524 1.2784 3.2546 25 6 7.1552 2.3249 3.4857 26 6 8.1307 1.1468 3.6451 27 6 7.1628 0.3298 2.7729 28 1 -1.0502 -0.0003 0.0003 29 1 3.0097 -0.8295 -0.6056 30 1 3.0094 -0.1084 1.0218 31 1 1.6320 -1.0400 -3.0494 32 1 0.5116 4.0185 0.9783 33 1 -0.4498 2.5977 1.4527 34 1 0.7326 2.4704 0.1283 35 1 0.3039 2.6470 3.7917 36 1 1.6653 0.9602 6.0148 37 1 2.8796 2.2135 6.3657 38 1 1.1922 2.6760 6.0385 39 1 5.5631 0.9481 4.1708 40 1 7.3585 2.9451 2.6127 41 1 7.0208 2.9069 4.3976 42 1 8.2105 0.7813 4.6688 43 1 9.1010 1.3172 3.1785 44 1 7.0346 -0.6991 3.1093 45 1 7.3672 0.4035 1.7048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490974655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:08 Heat of formation + Delta-G solvation = 53.923977 kcal Electronic energy + Delta-G solvation = -29082.985176 eV Core-core repulsion = 25262.063202 eV Total energy + Delta-G solvation = -3820.921974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64775 -39.05822 -38.14532 -36.33809 -35.09779 -33.74285 -31.94720 -31.56632 -31.14583 -28.26673 -27.17577 -26.37872 -25.63277 -25.19517 -24.45699 -22.65114 -21.21655 -19.90537 -19.09363 -17.95803 -17.84212 -16.78155 -16.68853 -16.16064 -15.41092 -15.11162 -14.96239 -14.81398 -14.17832 -13.96213 -13.79025 -13.75613 -13.12719 -12.95804 -12.63902 -12.53943 -12.39786 -12.23929 -12.16394 -12.11670 -11.97808 -11.85914 -11.56820 -11.41269 -11.22324 -11.05917 -11.01736 -10.48495 -10.38771 -10.35695 -10.09786 -9.55200 -9.34881 -9.21696 -9.07646 -8.80547 -8.44774 -7.93412 -7.82786 -6.29589 -3.89234 1.35557 1.61164 3.16219 3.25527 3.30163 3.32457 3.69343 3.85573 3.97890 4.12678 4.20138 4.36571 4.61010 4.61697 4.88671 4.89392 4.93441 4.96686 5.07098 5.33284 5.36720 5.48231 5.56396 5.58494 5.59525 5.67928 5.70549 5.74631 5.81800 5.86759 5.93465 5.97442 6.01410 6.10426 6.12006 6.22588 6.36346 6.40258 6.50400 6.67711 6.84637 6.89110 7.08859 7.55511 7.64062 8.04595 8.15979 8.44334 8.86142 9.12653 9.34763 9.91366 10.69674 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.005468 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.496695 B = 5119.009366 C = 6824.701096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.099 4.099 3 C 0.237 3.763 4 N -0.427 5.427 5 C -0.307 4.307 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.870 5.870 9 Si 0.927 3.073 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.510 3.490 14 O -0.574 6.574 15 C -0.170 4.170 16 C 0.030 3.970 17 C -0.122 4.122 18 C -0.216 4.216 19 C 0.164 3.836 20 C -0.100 4.100 21 N -0.549 5.549 22 C 0.349 3.651 23 O -0.278 6.278 24 C 0.060 3.940 25 C -0.151 4.151 26 C -0.138 4.138 27 C -0.137 4.137 28 H 0.198 0.802 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -0.680 14.353 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.100 4.100 3 C 0.113 3.887 4 N -0.144 5.144 5 C -0.435 4.435 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.508 5.508 9 Si 0.754 3.246 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.297 3.703 14 O -0.458 6.458 15 C -0.176 4.176 16 C 0.023 3.977 17 C -0.178 4.178 18 C -0.236 4.236 19 C 0.028 3.972 20 C -0.157 4.157 21 N -0.275 5.275 22 C 0.170 3.830 23 O -0.184 6.184 24 C 0.003 3.997 25 C -0.189 4.189 26 C -0.175 4.175 27 C -0.174 4.174 28 H 0.215 0.785 29 H 0.132 0.868 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.208 -0.565 14.305 14.485 hybrid contribution -0.694 -0.060 -1.320 1.492 sum 1.514 -0.625 12.985 13.088 Atomic orbital electron populations 1.24140 0.95192 1.02586 1.06828 1.23054 0.94168 0.97965 0.94843 1.18205 0.84411 0.89913 0.96131 1.43516 1.55408 1.06681 1.08817 1.19674 1.27014 1.15033 0.81779 0.87915 1.25357 0.95143 0.96883 0.99915 1.69968 1.23068 1.21666 1.36117 0.85919 0.78380 0.78809 0.81480 1.20272 1.21020 1.19439 1.17416 0.84279 0.84185 0.84431 1.90631 1.50919 1.29077 1.75144 1.20078 0.92974 1.08568 0.95948 1.20147 0.92505 0.90767 0.94327 1.20988 0.95666 1.01957 0.99187 1.21495 1.00718 1.08610 0.92805 1.20843 0.87368 0.92576 0.96442 1.20691 1.02402 1.02747 0.89865 1.66931 1.21787 1.23089 1.15663 1.19711 0.85231 0.90276 0.87795 1.86442 1.15627 1.80976 1.35340 1.24120 0.86882 0.96597 0.92079 1.23433 0.95534 0.97271 1.02659 1.22613 0.97770 0.97004 1.00147 1.23263 0.94253 0.98288 1.01625 0.78536 0.86807 0.93152 0.92050 0.90623 0.91030 0.89197 0.84773 0.90455 0.90747 0.90696 0.86783 0.89092 0.91126 0.89966 0.90605 0.90767 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.46 17.89 29.55 0.53 -4.93 16 2 C -0.10 -2.22 9.36 -37.12 -0.35 -2.57 16 3 C 0.24 5.57 4.91 -6.83 -0.03 5.53 16 4 N -0.43 -11.12 2.59 -119.16 -0.31 -11.43 16 5 C -0.31 -8.52 9.32 -15.00 -0.14 -8.66 16 6 H 0.10 2.99 7.38 -52.49 -0.39 2.61 16 7 C 0.03 0.79 5.08 -17.45 -0.09 0.71 16 8 N -0.87 -22.57 9.03 55.50 0.50 -22.07 16 9 Si 0.93 20.62 29.57 -169.99 -5.03 15.59 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.51 13.20 5.17 -12.52 -0.06 13.14 16 14 O -0.57 -16.85 16.78 5.25 0.09 -16.76 16 15 C -0.17 -3.71 3.90 -104.69 -0.41 -4.12 16 16 C 0.03 0.57 5.55 -103.91 -0.58 -0.01 16 17 C -0.12 -2.18 8.64 36.01 0.31 -1.87 16 18 C -0.22 -3.32 9.41 -39.50 -0.37 -3.69 16 19 C 0.16 2.47 6.78 -82.52 -0.56 1.91 16 20 C -0.10 -1.02 10.16 36.01 0.37 -0.66 16 21 N -0.55 -9.57 8.49 -9.19 -0.08 -9.65 16 22 C 0.35 7.07 7.11 -16.59 -0.12 6.95 16 23 O -0.28 -5.58 9.59 -18.01 -0.17 -5.75 16 24 C 0.06 0.92 4.18 -25.92 -0.11 0.81 16 25 C -0.15 -2.00 7.91 -25.92 -0.21 -2.20 16 26 C -0.14 -1.47 8.08 -25.92 -0.21 -1.68 16 27 C -0.14 -1.77 7.91 -25.92 -0.21 -1.97 16 28 H 0.20 3.25 7.80 -54.08 -0.42 2.82 16 29 H 0.11 2.80 6.42 -51.93 -0.33 2.47 16 30 H 0.05 1.12 6.79 -51.93 -0.35 0.76 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.09 1.95 5.23 -51.93 -0.27 1.68 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 39 H 0.11 1.68 6.88 -51.93 -0.36 1.32 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -32.23 375.05 -7.90 -40.13 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.33 Total: 7.61 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.23 Total: -3.31 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.11 Total: -43.15 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.08 Total: -22.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.23 -7.90 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490974655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.051 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds