Wall clock time and date at job start Tue Mar 31 2020 15:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46972 * 156.09904 * 3 2 1 5 5 C 1.36905 * 119.99952 * 264.55654 * 4 3 2 6 6 H 1.07996 * 119.99454 * 200.96683 * 5 4 3 7 7 C 1.39020 * 120.00041 * 20.96664 * 5 4 3 8 8 N 1.31384 * 120.00031 * 11.78865 * 7 5 4 9 9 Si 1.86798 * 119.99823 * 191.78093 * 7 5 4 10 10 H 1.48491 * 109.46994 * 84.98777 * 9 7 5 11 11 H 1.48503 * 109.46825 * 204.98499 * 9 7 5 12 12 H 1.48499 * 109.47182 * 324.98210 * 9 7 5 13 13 C 1.34771 * 119.99892 * 84.55742 * 4 3 2 14 14 O 1.21629 * 120.00186 * 179.97438 * 13 4 3 15 15 C 1.47422 * 120.00117 * 0.02562 * 13 4 3 16 16 C 1.40049 * 120.60345 * 270.00110 * 15 13 4 17 17 C 1.50707 * 120.82418 * 359.97288 * 16 15 13 18 18 C 1.38313 * 118.34584 * 179.70322 * 16 15 13 19 19 C 1.38372 * 119.46451 * 0.27259 * 18 16 15 20 20 C 1.50701 * 119.40037 * 179.97438 * 19 18 16 21 21 N 1.31890 * 121.19660 * 359.97438 * 19 18 16 22 22 C 1.32214 * 121.80764 * 0.02562 * 21 19 18 23 23 O 1.35438 * 119.80443 * 180.02562 * 22 21 19 24 24 C 1.42895 * 116.99535 * 0.02562 * 23 22 21 25 25 C 1.53778 * 113.61360 * 247.49293 * 24 23 22 26 26 C 1.53784 * 87.08456 * 220.02144 * 25 24 23 27 27 C 1.53781 * 87.07678 * 25.43381 * 26 25 24 28 28 H 4.40644 * 5.51437 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47434 * 36.10503 * 3 2 1 30 30 H 1.08997 * 109.47634 * 276.09957 * 3 2 1 31 31 H 0.96997 * 119.99960 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47139 * 269.72153 * 17 16 15 33 33 H 1.09001 * 109.46618 * 149.72406 * 17 16 15 34 34 H 1.08997 * 109.47056 * 29.72178 * 17 16 15 35 35 H 1.08002 * 120.27031 * 180.29401 * 18 16 15 36 36 H 1.09004 * 109.46773 * 90.00057 * 20 19 18 37 37 H 1.08994 * 109.47289 * 210.00172 * 20 19 18 38 38 H 1.09004 * 109.47411 * 330.00616 * 20 19 18 39 39 H 1.08997 * 112.85859 * 18.80809 * 24 23 22 40 40 H 1.08997 * 113.61563 * 334.57311 * 25 24 23 41 41 H 1.09007 * 113.61485 * 105.47333 * 25 24 23 42 42 H 1.08997 * 113.61780 * 270.88461 * 26 25 24 43 43 H 1.09007 * 113.60986 * 139.98175 * 26 25 24 44 44 H 1.09004 * 113.61268 * 220.01188 * 27 26 25 45 45 H 1.09000 * 113.69279 * 89.12753 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2637 -0.5596 5 6 3.4679 1.3414 -1.8850 6 1 4.1265 2.1244 -2.2307 7 6 2.9594 0.4125 -2.7857 8 7 1.9865 -0.3916 -2.4210 9 14 3.6593 0.3078 -4.5144 10 1 4.8602 -0.5655 -4.5101 11 1 2.6368 -0.2611 -5.4288 12 1 4.0371 1.6669 -4.9786 13 6 3.2535 2.3491 0.2303 14 8 3.6588 3.3976 -0.2342 15 6 2.8942 2.2652 1.6576 16 6 1.5887 2.5432 2.0817 17 6 0.5220 2.9345 1.0917 18 6 1.3015 2.4442 3.4311 19 6 2.3026 2.0827 4.3153 20 6 1.9882 1.9757 5.7853 21 7 3.5269 1.8300 3.8949 22 6 3.8552 1.9098 2.6167 23 8 5.1250 1.6410 2.2297 24 6 6.0524 1.2784 3.2546 25 6 7.1552 2.3249 3.4857 26 6 8.1307 1.1468 3.6451 27 6 7.1628 0.3298 2.7729 28 1 -1.0502 -0.0003 0.0003 29 1 3.0097 -0.8295 -0.6056 30 1 3.0094 -0.1084 1.0218 31 1 1.6320 -1.0400 -3.0494 32 1 0.5116 4.0185 0.9783 33 1 -0.4498 2.5977 1.4527 34 1 0.7326 2.4704 0.1283 35 1 0.3039 2.6470 3.7917 36 1 1.6653 0.9602 6.0148 37 1 2.8796 2.2135 6.3657 38 1 1.1922 2.6760 6.0385 39 1 5.5631 0.9481 4.1708 40 1 7.3585 2.9451 2.6127 41 1 7.0208 2.9069 4.3976 42 1 8.2105 0.7813 4.6688 43 1 9.1010 1.3172 3.1785 44 1 7.0346 -0.6991 3.1093 45 1 7.3672 0.4035 1.7048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490974655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:07 Heat of formation + Delta-G solvation = 33.944683 kcal Electronic energy + Delta-G solvation = -29083.851543 eV Core-core repulsion = 25262.063202 eV Total energy + Delta-G solvation = -3821.788341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05895 -40.45307 -39.80368 -37.57369 -37.10041 -35.17577 -33.82741 -33.11492 -32.68468 -29.68983 -28.40561 -28.22361 -26.74001 -26.63893 -25.99093 -24.04102 -22.58288 -21.40816 -20.39565 -19.70282 -19.26929 -18.59834 -18.31183 -17.74001 -16.95870 -16.66888 -16.24456 -16.05650 -15.95034 -15.49700 -15.36213 -14.93183 -14.66303 -14.30027 -14.20351 -14.03500 -13.87197 -13.61919 -13.50413 -13.43929 -13.38611 -13.14066 -12.95039 -12.82322 -12.71008 -12.55689 -12.35237 -12.19009 -12.12720 -11.43766 -11.28426 -11.19759 -11.11779 -10.87651 -10.60584 -10.49782 -10.24770 -9.85663 -9.31497 -8.31714 -6.00779 -0.00966 0.24829 1.34557 1.39305 1.50606 1.83076 2.02830 2.10459 2.32387 2.44063 2.62116 3.01944 3.06982 3.29068 3.55177 3.57069 3.68676 3.83786 3.84696 3.87028 4.01324 4.03541 4.20785 4.38970 4.51654 4.57920 4.63154 4.64025 4.70717 4.72590 4.72990 4.87627 4.91544 4.92255 4.95217 5.00991 5.01739 5.10007 5.23749 5.30406 5.37420 5.41297 5.44738 5.63064 6.01016 6.32833 6.41156 6.81546 7.07875 7.18124 7.33869 7.92287 8.65033 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.005468 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.496695 B = 5119.009366 C = 6824.701096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.146 4.146 3 C 0.249 3.751 4 N -0.433 5.433 5 C -0.349 4.349 6 H 0.072 0.928 7 C 0.005 3.995 8 N -0.873 5.873 9 Si 0.990 3.010 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.279 1.279 13 C 0.507 3.493 14 O -0.631 6.631 15 C -0.211 4.211 16 C 0.021 3.979 17 C -0.116 4.116 18 C -0.206 4.206 19 C 0.169 3.831 20 C -0.096 4.096 21 N -0.548 5.548 22 C 0.337 3.663 23 O -0.312 6.312 24 C 0.042 3.958 25 C -0.154 4.154 26 C -0.114 4.114 27 C -0.140 4.140 28 H 0.238 0.762 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.274 0.726 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.047 0.953 35 H 0.180 0.820 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 -1.850 17.045 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.147 4.147 3 C 0.126 3.874 4 N -0.149 5.149 5 C -0.477 4.477 6 H 0.090 0.910 7 C -0.199 4.199 8 N -0.510 5.510 9 Si 0.813 3.187 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.204 1.204 13 C 0.296 3.704 14 O -0.519 6.519 15 C -0.218 4.218 16 C 0.013 3.987 17 C -0.173 4.173 18 C -0.226 4.226 19 C 0.032 3.968 20 C -0.152 4.152 21 N -0.274 5.274 22 C 0.159 3.841 23 O -0.219 6.219 24 C -0.013 4.013 25 C -0.191 4.191 26 C -0.151 4.151 27 C -0.177 4.177 28 H 0.254 0.746 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.197 0.803 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.415 -1.783 17.019 17.117 hybrid contribution -0.225 0.285 -2.065 2.097 sum 0.190 -1.498 14.954 15.030 Atomic orbital electron populations 1.24990 0.95944 1.00063 1.04278 1.22985 0.94334 1.00260 0.97128 1.17974 0.85775 0.88001 0.95629 1.43651 1.55086 1.07682 1.08436 1.19567 1.28717 1.15924 0.83482 0.91044 1.26049 0.94988 0.95767 1.03049 1.70070 1.22666 1.21082 1.37136 0.85010 0.78303 0.78357 0.77009 1.19110 1.19480 1.20408 1.18018 0.82917 0.83193 0.86240 1.90551 1.53437 1.31029 1.76888 1.19888 0.95297 1.13016 0.93559 1.20399 0.91314 0.90738 0.96235 1.20950 0.97286 1.01827 0.97189 1.21935 1.02817 1.06889 0.90920 1.21849 0.86297 0.89685 0.99014 1.20867 1.03763 1.04789 0.85827 1.67100 1.23172 1.23347 1.13792 1.19768 0.85094 0.90725 0.88545 1.86409 1.16431 1.81246 1.37832 1.24583 0.86709 0.98319 0.91709 1.23422 0.95783 0.97726 1.02202 1.22603 0.97137 0.94238 1.01164 1.23295 0.94261 0.99253 1.00911 0.74587 0.88795 0.92712 0.91562 0.90413 0.87233 0.93404 0.80289 0.88499 0.90223 0.87607 0.86068 0.91378 0.89874 0.87170 0.89285 0.89145 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.12 17.89 74.32 1.33 -7.79 16 2 C -0.15 -6.62 9.36 31.12 0.29 -6.33 16 3 C 0.25 12.32 4.91 84.57 0.42 12.73 16 4 N -0.43 -24.16 2.59 -649.16 -1.68 -25.85 16 5 C -0.35 -20.75 9.32 84.09 0.78 -19.97 16 6 H 0.07 4.57 7.38 -2.91 -0.02 4.55 16 7 C 0.00 0.26 5.08 84.95 0.43 0.69 16 8 N -0.87 -45.99 9.03 21.68 0.20 -45.79 16 9 Si 0.99 43.37 29.57 68.60 2.03 45.40 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.51 28.33 5.17 86.66 0.45 28.78 16 14 O -0.63 -40.50 16.78 -4.12 -0.07 -40.56 16 15 C -0.21 -9.69 3.90 -19.91 -0.08 -9.77 16 16 C 0.02 0.78 5.55 -19.41 -0.11 0.67 16 17 C -0.12 -4.11 8.64 71.24 0.62 -3.50 16 18 C -0.21 -5.70 9.41 22.32 0.21 -5.49 16 19 C 0.17 4.59 6.78 42.58 0.29 4.88 16 20 C -0.10 -1.50 10.16 71.24 0.72 -0.77 16 21 N -0.55 -18.67 8.49 -295.99 -2.51 -21.18 16 22 C 0.34 14.17 7.11 85.15 0.61 14.77 16 23 O -0.31 -13.41 9.59 -87.35 -0.84 -14.25 16 24 C 0.04 1.33 4.18 31.12 0.13 1.46 16 25 C -0.15 -4.12 7.91 31.12 0.25 -3.87 16 26 C -0.11 -2.29 8.08 31.12 0.25 -2.03 16 27 C -0.14 -3.67 7.91 31.12 0.25 -3.43 16 28 H 0.24 6.88 7.80 -4.41 -0.03 6.84 16 29 H 0.09 4.90 6.42 -2.39 -0.02 4.88 16 30 H 0.05 2.58 6.79 -2.39 -0.02 2.57 16 31 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.11 2.90 8.10 -2.39 -0.02 2.88 16 34 H 0.05 2.12 5.23 -2.39 -0.01 2.10 16 35 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.08 8.07 -2.38 -0.02 1.06 16 39 H 0.12 3.55 6.88 -2.39 -0.02 3.53 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -77.96 375.05 4.95 -73.01 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 1.00 Total: 28.21 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 6.83 Total: 1.02 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -4.00 Total: -92.82 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -0.91 Total: -54.82 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -77.96 4.95 -73.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490974655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.952 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds