Wall clock time and date at job start Tue Mar 31 2020 14:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47290 * 334.12001 * 3 2 1 5 5 C 1.37099 * 119.99904 * 264.96661 * 4 3 2 6 6 H 1.08005 * 119.99820 * 140.30297 * 5 4 3 7 7 C 1.38944 * 120.00422 * 320.30594 * 5 4 3 8 8 N 1.31405 * 120.00450 * 157.90181 * 7 5 4 9 9 Si 1.86811 * 119.99604 * 337.89964 * 7 5 4 10 10 H 1.48494 * 109.46866 * 92.54039 * 9 7 5 11 11 H 1.48505 * 109.46842 * 212.53992 * 9 7 5 12 12 H 1.48496 * 109.47017 * 332.54170 * 9 7 5 13 13 C 1.34783 * 120.00413 * 84.96909 * 4 3 2 14 14 O 1.21294 * 119.99436 * 0.02562 * 13 4 3 15 15 C 1.50693 * 120.00154 * 180.02562 * 13 4 3 16 16 C 1.53005 * 109.46769 * 179.97438 * 15 13 4 17 17 H 1.08994 * 109.47066 * 304.99768 * 16 15 13 18 18 N 1.46492 * 109.47119 * 65.00108 * 16 15 13 19 19 C 1.34776 * 120.00216 * 204.57892 * 18 16 15 20 20 C 1.50704 * 120.00439 * 184.97287 * 19 18 16 21 21 O 1.21280 * 119.99925 * 4.97748 * 19 18 16 22 22 C 1.50705 * 109.46914 * 184.99873 * 16 15 13 23 23 C 1.38233 * 120.00044 * 102.55389 * 22 16 15 24 24 C 1.38226 * 120.00058 * 179.97438 * 23 22 16 25 25 C 1.38238 * 120.00525 * 359.97438 * 24 23 22 26 26 C 1.50690 * 120.00646 * 179.97438 * 25 24 23 27 27 C 1.38234 * 119.99410 * 359.97438 * 25 24 23 28 28 C 1.38236 * 119.99801 * 282.46485 * 22 16 15 29 29 H 4.40638 * 5.51460 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.46713 * 214.11642 * 3 2 1 31 31 H 1.09001 * 109.46989 * 94.11909 * 3 2 1 32 32 H 0.97007 * 119.99938 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47575 * 60.00240 * 15 13 4 34 34 H 1.09003 * 109.47296 * 299.99537 * 15 13 4 35 35 H 0.97006 * 120.00485 * 24.58102 * 18 16 15 36 36 H 1.09002 * 109.46822 * 60.00159 * 20 19 18 37 37 H 1.08998 * 109.47033 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47323 * 300.00296 * 20 19 18 39 39 H 1.08000 * 119.99828 * 0.25054 * 23 22 16 40 40 H 1.08009 * 119.99980 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47346 * 89.99911 * 26 25 24 42 42 H 1.09001 * 109.47536 * 210.00226 * 26 25 24 43 43 H 1.08997 * 109.47146 * 330.00382 * 26 25 24 44 44 H 1.07999 * 120.00325 * 179.97438 * 27 25 24 45 45 H 1.08002 * 120.00379 * 0.08174 * 28 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2417 0.6028 5 6 3.4617 -1.2755 1.9339 6 1 3.2077 -2.1393 2.5305 7 6 4.1195 -0.1987 2.5154 8 7 4.0555 -0.0134 3.8148 9 14 5.0951 0.9857 1.4500 10 1 4.2264 2.1214 1.0492 11 1 6.2582 1.4989 2.2177 12 1 5.5763 0.2783 0.2363 13 6 3.2636 -2.3516 -0.1510 14 8 2.9750 -2.3215 -1.3287 15 6 3.7660 -3.6297 0.4693 16 6 3.8167 -4.7276 -0.5952 17 1 2.8367 -4.8269 -1.0617 18 7 4.8090 -4.3749 -1.6135 19 6 4.7055 -4.8800 -2.8587 20 6 5.7853 -4.6084 -3.8743 21 8 3.7433 -5.5532 -3.1620 22 6 4.2010 -6.0346 0.0492 23 6 3.2349 -6.9898 0.3045 24 6 3.5875 -8.1888 0.8950 25 6 4.9063 -8.4331 1.2299 26 6 5.2906 -9.7400 1.8742 27 6 5.8726 -7.4783 0.9736 28 6 5.5200 -6.2791 0.3833 29 1 -1.0498 -0.0005 0.0000 30 1 3.0089 0.8516 0.5764 31 1 3.0093 0.0746 -1.0250 32 1 4.5145 0.7387 4.2206 33 1 3.0936 -3.9331 1.2717 34 1 4.7653 -3.4690 0.8739 35 1 5.5406 -3.7778 -1.3917 36 1 6.7345 -5.0006 -3.5091 37 1 5.5291 -5.0942 -4.8158 38 1 5.8731 -3.5335 -4.0327 39 1 2.2054 -6.8010 0.0385 40 1 2.8325 -8.9349 1.0949 41 1 5.5428 -10.4658 1.1012 42 1 6.1528 -9.5856 2.5229 43 1 4.4540 -10.1138 2.4645 44 1 6.9028 -7.6689 1.2355 45 1 6.2748 -5.5329 0.1837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490996029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:18 Heat of formation + Delta-G solvation = 11.116132 kcal Electronic energy + Delta-G solvation = -27964.170683 eV Core-core repulsion = 24141.392422 eV Total energy + Delta-G solvation = -3822.778261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.10610 -38.85869 -38.63348 -35.73926 -34.84936 -32.74715 -32.55364 -31.73850 -30.80167 -30.76060 -28.97878 -27.41397 -26.25110 -24.85985 -22.90521 -22.56851 -20.76140 -19.97686 -19.13118 -18.42933 -17.16876 -16.53318 -16.37224 -16.06289 -15.80002 -15.28592 -15.07597 -14.71768 -14.57450 -14.40993 -13.90950 -13.75203 -13.39035 -13.29207 -13.13406 -13.11145 -12.80526 -12.57235 -12.47663 -12.30962 -12.09490 -11.93602 -11.81519 -11.40986 -11.16267 -11.03521 -10.99163 -10.89684 -10.71465 -10.29642 -9.86494 -9.56583 -9.47284 -9.31885 -8.89065 -8.76657 -8.63350 -8.33049 -8.01183 -6.61498 -4.24134 1.43072 1.55237 2.92413 3.00600 3.09865 3.15141 3.23762 3.50548 3.52284 3.62806 3.90591 3.99431 4.44148 4.76089 4.88474 4.90116 5.03905 5.10041 5.12395 5.16984 5.28723 5.34871 5.42137 5.50179 5.51576 5.60636 5.69329 5.76340 5.80000 5.88489 5.93719 6.03186 6.13458 6.15751 6.22286 6.27340 6.40504 6.52342 6.55588 6.67843 6.68796 6.92966 7.13581 7.18682 7.84486 7.94112 8.10887 8.25090 8.58559 8.81344 9.18059 9.53042 10.48936 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.004064 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.758529 B = 6888.215740 C = 7772.499319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C 0.200 3.800 4 N -0.461 5.461 5 C -0.350 4.350 6 H 0.104 0.896 7 C 0.071 3.929 8 N -0.852 5.852 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.258 1.258 13 C 0.484 3.516 14 O -0.581 6.581 15 C -0.121 4.121 16 C 0.200 3.800 17 H 0.100 0.900 18 N -0.707 5.707 19 C 0.518 3.482 20 C -0.173 4.173 21 O -0.550 6.550 22 C -0.090 4.090 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.094 4.094 26 C -0.112 4.112 27 C -0.123 4.123 28 C -0.099 4.099 29 H 0.211 0.789 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.277 0.723 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.398 0.602 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -10.511 -4.938 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.165 4.165 3 C 0.078 3.922 4 N -0.182 5.182 5 C -0.477 4.477 6 H 0.122 0.878 7 C -0.138 4.138 8 N -0.486 5.486 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.182 1.182 13 C 0.273 3.727 14 O -0.465 6.465 15 C -0.161 4.161 16 C 0.095 3.905 17 H 0.118 0.882 18 N -0.357 5.357 19 C 0.304 3.696 20 C -0.233 4.233 21 O -0.428 6.428 22 C -0.091 4.091 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.094 4.094 26 C -0.168 4.168 27 C -0.141 4.141 28 C -0.118 4.118 29 H 0.228 0.772 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.232 0.768 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.784 -10.867 -5.543 13.104 hybrid contribution 0.625 1.217 0.070 1.370 sum 5.410 -9.650 -5.473 12.343 Atomic orbital electron populations 1.24651 0.95648 1.01376 1.03064 1.23717 0.94900 0.99447 0.98403 1.18712 0.83963 0.89988 0.99509 1.43694 1.56872 1.07789 1.09859 1.19058 1.38719 1.07402 0.82507 0.87807 1.25361 0.95882 0.97150 0.95381 1.69773 1.38895 1.29328 1.10575 0.87084 0.80601 0.81319 0.81557 1.19860 1.20953 1.18220 1.20381 0.80487 0.85886 0.85927 1.90615 1.54290 1.85478 1.16083 1.21684 1.04478 0.92028 0.97928 1.19575 0.93864 0.89580 0.87477 0.88199 1.45812 1.29787 1.49531 1.10606 1.20573 0.87326 0.78949 0.82711 1.21894 0.98177 1.04177 0.99027 1.90674 1.33009 1.39999 1.79120 1.20253 0.93859 0.96202 0.98823 1.21011 0.99383 0.93161 0.98144 1.20956 0.95622 0.97242 1.00108 1.19869 0.93655 0.96339 0.99508 1.20758 1.01844 0.94274 0.99966 1.20953 0.98836 0.93900 1.00420 1.20905 0.95752 0.96954 0.98147 0.77162 0.89019 0.89277 0.91283 0.88118 0.88410 0.76807 0.89826 0.89441 0.89539 0.85988 0.86310 0.91521 0.91720 0.91722 0.86393 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.37 19.25 29.55 0.57 -3.80 16 2 C -0.16 -3.55 13.63 -37.12 -0.51 -4.06 16 3 C 0.20 4.43 4.47 -6.83 -0.03 4.40 16 4 N -0.46 -10.58 2.11 -117.94 -0.25 -10.82 16 5 C -0.35 -8.59 9.00 -14.93 -0.13 -8.72 16 6 H 0.10 2.68 7.30 -52.48 -0.38 2.29 16 7 C 0.07 1.76 5.26 -17.47 -0.09 1.67 16 8 N -0.85 -22.40 13.96 55.50 0.77 -21.63 16 9 Si 0.87 18.80 25.25 -169.99 -4.29 14.51 16 10 H -0.27 -5.74 6.57 56.52 0.37 -5.37 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 13 C 0.48 10.44 7.44 -10.99 -0.08 10.36 16 14 O -0.58 -13.62 15.02 5.54 0.08 -13.54 16 15 C -0.12 -2.16 3.91 -27.88 -0.11 -2.27 16 16 C 0.20 3.34 1.76 -69.08 -0.12 3.22 16 17 H 0.10 1.96 7.17 -51.93 -0.37 1.58 16 18 N -0.71 -10.82 3.55 -54.93 -0.20 -11.01 16 19 C 0.52 8.33 7.89 -10.98 -0.09 8.24 16 20 C -0.17 -1.93 10.32 36.01 0.37 -1.56 16 21 O -0.55 -11.17 16.72 5.56 0.09 -11.08 16 22 C -0.09 -1.36 4.90 -104.62 -0.51 -1.87 16 23 C -0.10 -1.43 9.67 -39.59 -0.38 -1.81 16 24 C -0.12 -1.55 9.70 -39.59 -0.38 -1.93 16 25 C -0.09 -1.13 5.88 -104.63 -0.62 -1.74 16 26 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 27 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 28 C -0.10 -1.34 9.31 -39.58 -0.37 -1.70 16 29 H 0.21 3.04 7.80 -54.10 -0.42 2.62 16 30 H 0.09 2.03 3.74 -51.93 -0.19 1.84 16 31 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 32 H 0.28 6.79 8.31 -40.82 -0.34 6.46 16 33 H 0.10 1.81 7.68 -51.93 -0.40 1.41 16 34 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 35 H 0.40 5.27 8.60 -40.82 -0.35 4.92 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.12 1.70 8.02 -52.49 -0.42 1.28 16 40 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.42 7.80 -52.49 -0.41 1.01 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -31.94 386.44 -6.78 -38.71 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.31 Total: 13.16 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.51 Total: -4.12 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.33 Total: -43.47 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.18 Total: -24.62 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.29 Total: 14.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.94 -6.78 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.830 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds