Wall clock time and date at job start Tue Mar 31 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47290 * 334.12001 * 3 2 1 5 5 C 1.37099 * 119.99904 * 264.96661 * 4 3 2 6 6 H 1.08005 * 119.99820 * 140.30297 * 5 4 3 7 7 C 1.38944 * 120.00422 * 320.30594 * 5 4 3 8 8 N 1.31405 * 120.00450 * 157.90181 * 7 5 4 9 9 Si 1.86811 * 119.99604 * 337.89964 * 7 5 4 10 10 H 1.48494 * 109.46866 * 92.54039 * 9 7 5 11 11 H 1.48505 * 109.46842 * 212.53992 * 9 7 5 12 12 H 1.48496 * 109.47017 * 332.54170 * 9 7 5 13 13 C 1.34783 * 120.00413 * 84.96909 * 4 3 2 14 14 O 1.21294 * 119.99436 * 0.02562 * 13 4 3 15 15 C 1.50693 * 120.00154 * 180.02562 * 13 4 3 16 16 C 1.53005 * 109.46769 * 179.97438 * 15 13 4 17 17 H 1.08994 * 109.47066 * 304.99768 * 16 15 13 18 18 N 1.46492 * 109.47119 * 65.00108 * 16 15 13 19 19 C 1.34776 * 120.00216 * 204.57892 * 18 16 15 20 20 C 1.50704 * 120.00439 * 184.97287 * 19 18 16 21 21 O 1.21280 * 119.99925 * 4.97748 * 19 18 16 22 22 C 1.50705 * 109.46914 * 184.99873 * 16 15 13 23 23 C 1.38233 * 120.00044 * 102.55389 * 22 16 15 24 24 C 1.38226 * 120.00058 * 179.97438 * 23 22 16 25 25 C 1.38238 * 120.00525 * 359.97438 * 24 23 22 26 26 C 1.50690 * 120.00646 * 179.97438 * 25 24 23 27 27 C 1.38234 * 119.99410 * 359.97438 * 25 24 23 28 28 C 1.38236 * 119.99801 * 282.46485 * 22 16 15 29 29 H 4.40638 * 5.51460 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.46713 * 214.11642 * 3 2 1 31 31 H 1.09001 * 109.46989 * 94.11909 * 3 2 1 32 32 H 0.97007 * 119.99938 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47575 * 60.00240 * 15 13 4 34 34 H 1.09003 * 109.47296 * 299.99537 * 15 13 4 35 35 H 0.97006 * 120.00485 * 24.58102 * 18 16 15 36 36 H 1.09002 * 109.46822 * 60.00159 * 20 19 18 37 37 H 1.08998 * 109.47033 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47323 * 300.00296 * 20 19 18 39 39 H 1.08000 * 119.99828 * 0.25054 * 23 22 16 40 40 H 1.08009 * 119.99980 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47346 * 89.99911 * 26 25 24 42 42 H 1.09001 * 109.47536 * 210.00226 * 26 25 24 43 43 H 1.08997 * 109.47146 * 330.00382 * 26 25 24 44 44 H 1.07999 * 120.00325 * 179.97438 * 27 25 24 45 45 H 1.08002 * 120.00379 * 0.08174 * 28 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2417 0.6028 5 6 3.4617 -1.2755 1.9339 6 1 3.2077 -2.1393 2.5305 7 6 4.1195 -0.1987 2.5154 8 7 4.0555 -0.0134 3.8148 9 14 5.0951 0.9857 1.4500 10 1 4.2264 2.1214 1.0492 11 1 6.2582 1.4989 2.2177 12 1 5.5763 0.2783 0.2363 13 6 3.2636 -2.3516 -0.1510 14 8 2.9750 -2.3215 -1.3287 15 6 3.7660 -3.6297 0.4693 16 6 3.8167 -4.7276 -0.5952 17 1 2.8367 -4.8269 -1.0617 18 7 4.8090 -4.3749 -1.6135 19 6 4.7055 -4.8800 -2.8587 20 6 5.7853 -4.6084 -3.8743 21 8 3.7433 -5.5532 -3.1620 22 6 4.2010 -6.0346 0.0492 23 6 3.2349 -6.9898 0.3045 24 6 3.5875 -8.1888 0.8950 25 6 4.9063 -8.4331 1.2299 26 6 5.2906 -9.7400 1.8742 27 6 5.8726 -7.4783 0.9736 28 6 5.5200 -6.2791 0.3833 29 1 -1.0498 -0.0005 0.0000 30 1 3.0089 0.8516 0.5764 31 1 3.0093 0.0746 -1.0250 32 1 4.5145 0.7387 4.2206 33 1 3.0936 -3.9331 1.2717 34 1 4.7653 -3.4690 0.8739 35 1 5.5406 -3.7778 -1.3917 36 1 6.7345 -5.0006 -3.5091 37 1 5.5291 -5.0942 -4.8158 38 1 5.8731 -3.5335 -4.0327 39 1 2.2054 -6.8010 0.0385 40 1 2.8325 -8.9349 1.0949 41 1 5.5428 -10.4658 1.1012 42 1 6.1528 -9.5856 2.5229 43 1 4.4540 -10.1138 2.4645 44 1 6.9028 -7.6689 1.2355 45 1 6.2748 -5.5329 0.1837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490996029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:17 Heat of formation + Delta-G solvation = -7.327281 kcal Electronic energy + Delta-G solvation = -27964.970450 eV Core-core repulsion = 24141.392422 eV Total energy + Delta-G solvation = -3823.578028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44546 -40.39837 -39.83927 -37.31794 -36.36688 -34.49667 -33.68003 -33.49365 -31.99361 -31.79570 -30.16884 -28.71073 -27.64373 -26.60725 -24.11926 -23.63636 -21.89443 -21.20708 -20.89037 -20.08206 -18.69542 -17.97891 -17.80397 -17.45358 -17.36426 -16.68299 -16.21703 -16.14829 -15.84065 -15.63624 -15.52238 -14.95425 -14.72780 -14.66725 -14.53836 -14.32312 -14.26396 -13.81605 -13.72708 -13.47821 -13.16220 -12.98033 -12.95719 -12.85865 -12.78531 -12.64681 -12.32372 -12.07630 -12.01760 -11.79242 -11.54347 -11.26167 -11.00641 -10.88349 -10.52529 -10.06775 -9.87374 -9.79298 -9.38698 -8.53453 -6.19349 0.39229 0.52951 1.20329 1.33128 1.44101 1.59854 1.76508 1.88012 1.89256 2.18194 2.36095 2.71395 2.88854 2.96551 3.57173 3.75943 3.89378 3.97966 4.00438 4.09336 4.17407 4.20185 4.28231 4.33158 4.50771 4.52555 4.55978 4.64123 4.68555 4.73798 4.85998 4.87547 4.94436 4.97958 5.03236 5.07651 5.20889 5.30636 5.35427 5.49151 5.52557 5.71678 5.76918 6.03947 6.14401 6.18697 6.65180 6.66823 6.92180 7.33440 7.36688 7.71603 8.60232 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.004064 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.758529 B = 6888.215740 C = 7772.499319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.229 4.229 3 C 0.197 3.803 4 N -0.469 5.469 5 C -0.348 4.348 6 H 0.081 0.919 7 C 0.036 3.964 8 N -0.891 5.891 9 Si 0.919 3.081 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.252 1.252 13 C 0.482 3.518 14 O -0.600 6.600 15 C -0.109 4.109 16 C 0.213 3.787 17 H 0.062 0.938 18 N -0.702 5.702 19 C 0.507 3.493 20 C -0.163 4.163 21 O -0.602 6.602 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.110 4.110 27 C -0.126 4.126 28 C -0.105 4.105 29 H 0.255 0.745 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.281 0.719 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.409 0.591 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.145 0.855 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 -11.040 -5.270 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.230 4.230 3 C 0.076 3.924 4 N -0.190 5.190 5 C -0.475 4.475 6 H 0.099 0.901 7 C -0.170 4.170 8 N -0.526 5.526 9 Si 0.743 3.257 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.175 1.175 13 C 0.273 3.727 14 O -0.485 6.485 15 C -0.149 4.149 16 C 0.107 3.893 17 H 0.080 0.920 18 N -0.352 5.352 19 C 0.296 3.704 20 C -0.222 4.222 21 O -0.483 6.483 22 C -0.110 4.110 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.094 4.094 26 C -0.166 4.166 27 C -0.144 4.144 28 C -0.123 4.123 29 H 0.271 0.729 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.245 0.755 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.163 0.837 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.351 -11.380 -5.871 14.294 hybrid contribution 0.017 1.320 0.193 1.334 sum 6.368 -10.059 -5.678 13.190 Atomic orbital electron populations 1.25699 0.96621 0.98469 1.00203 1.24018 0.95738 1.02166 1.01102 1.18691 0.84876 0.89408 0.99465 1.43777 1.57311 1.08548 1.09364 1.18887 1.38823 1.06837 0.82991 0.90094 1.25890 0.96313 0.98613 0.96183 1.69843 1.40130 1.30553 1.12103 0.86255 0.79409 0.79757 0.80239 1.18986 1.20412 1.17532 1.20922 0.79662 0.86468 0.85690 1.90596 1.54989 1.85875 1.17013 1.21613 1.04658 0.90666 0.97967 1.19232 0.92731 0.90217 0.87143 0.91998 1.45808 1.29524 1.49427 1.10422 1.21529 0.87725 0.77851 0.83287 1.21898 0.97530 1.05279 0.97464 1.90648 1.35359 1.42339 1.79957 1.20126 0.95005 0.95544 1.00352 1.21137 0.99160 0.94324 0.99315 1.21221 0.96868 0.96857 0.99692 1.20308 0.93140 0.97578 0.98423 1.20817 1.02747 0.92676 1.00404 1.21314 1.00294 0.93250 0.99557 1.21102 0.95117 0.98007 0.98093 0.72872 0.89381 0.88909 0.90881 0.88705 0.87136 0.75497 0.86602 0.89184 0.88124 0.86890 0.84448 0.90321 0.90397 0.90828 0.83715 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.00 19.25 74.32 1.43 -5.57 16 2 C -0.23 -9.90 13.63 31.13 0.42 -9.48 16 3 C 0.20 8.75 4.47 84.58 0.38 9.13 16 4 N -0.47 -21.76 2.11 -645.44 -1.36 -23.12 16 5 C -0.35 -17.40 9.00 84.04 0.76 -16.64 16 6 H 0.08 4.33 7.30 -2.91 -0.02 4.31 16 7 C 0.04 1.78 5.26 84.93 0.45 2.22 16 8 N -0.89 -47.35 13.96 21.66 0.30 -47.05 16 9 Si 0.92 38.32 25.25 68.60 1.73 40.06 16 10 H -0.26 -10.60 6.57 99.48 0.65 -9.94 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 13 C 0.48 21.21 7.44 87.65 0.65 21.86 16 14 O -0.60 -28.66 15.02 -3.07 -0.05 -28.71 16 15 C -0.11 -4.01 3.91 29.85 0.12 -3.89 16 16 C 0.21 7.36 1.76 44.25 0.08 7.44 16 17 H 0.06 2.61 7.17 -2.39 -0.02 2.59 16 18 N -0.70 -21.47 3.55 -446.10 -1.59 -23.06 16 19 C 0.51 16.30 7.89 87.66 0.69 16.99 16 20 C -0.16 -3.31 10.32 71.24 0.74 -2.58 16 21 O -0.60 -25.26 16.72 -3.03 -0.05 -25.31 16 22 C -0.11 -3.35 4.90 -19.86 -0.10 -3.45 16 23 C -0.12 -3.64 9.67 22.27 0.22 -3.42 16 24 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 25 C -0.09 -2.09 5.88 -19.87 -0.12 -2.21 16 26 C -0.11 -1.64 10.01 71.23 0.71 -0.93 16 27 C -0.13 -2.83 9.70 22.27 0.22 -2.62 16 28 C -0.11 -2.72 9.31 22.27 0.21 -2.51 16 29 H 0.26 6.43 7.80 -4.43 -0.03 6.39 16 30 H 0.09 3.88 3.74 -2.39 -0.01 3.87 16 31 H 0.09 3.93 7.58 -2.39 -0.02 3.91 16 32 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 33 H 0.09 3.59 7.68 -2.39 -0.02 3.57 16 34 H 0.11 3.75 8.10 -2.39 -0.02 3.73 16 35 H 0.41 10.47 8.60 -92.70 -0.80 9.67 16 36 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 3.44 8.02 -2.91 -0.02 3.42 16 40 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 43 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 44 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.13 2.95 7.80 -2.91 -0.02 2.93 16 Total: -1.00 -71.23 386.44 6.21 -65.02 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.15 Total: 40.81 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 7.06 Total: 1.36 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -2.64 Total: -93.23 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.10 Total: -54.02 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.73 Total: 40.06 kcal Total: -71.23 6.21 -65.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.696 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds