Wall clock time and date at job start Tue Mar 31 2020 14:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37910 * 120.08829 * 2 1 4 4 C 1.38384 * 120.16808 * 179.77036 * 3 2 1 5 5 C 1.38431 * 120.34262 * 0.51478 * 4 3 2 6 6 C 1.37865 * 120.17404 * 359.73951 * 5 4 3 7 7 C 1.39816 * 120.08159 * 180.28212 * 2 1 3 8 8 C 1.47211 * 120.17306 * 359.97438 * 7 2 1 9 9 C 1.34805 * 119.99791 * 130.76035 * 8 7 2 10 10 C 1.46429 * 120.00264 * 349.81861 * 9 8 7 11 11 O 1.21693 * 120.00083 * 352.88685 * 10 9 8 12 12 N 1.34782 * 119.99883 * 172.88633 * 10 9 8 13 13 C 1.46962 * 120.59537 * 354.85154 * 12 10 9 14 14 C 1.53808 * 108.39979 * 124.75689 * 13 12 10 15 15 N 1.46969 * 108.57748 * 49.63669 * 14 13 12 16 16 C 1.34777 * 120.59301 * 124.62813 * 15 14 13 17 17 O 1.21680 * 120.00228 * 185.01377 * 16 15 14 18 18 C 1.46377 * 119.99763 * 5.01238 * 16 15 14 19 19 H 1.07999 * 120.00275 * 333.29002 * 18 16 15 20 20 C 1.40051 * 119.99848 * 153.28883 * 18 16 15 21 21 N 1.30665 * 120.00479 * 179.89898 * 20 18 16 22 22 Si 1.86805 * 120.00025 * 359.89780 * 20 18 16 23 23 H 1.48503 * 109.47039 * 90.51708 * 22 20 18 24 24 H 1.48491 * 109.47524 * 210.52029 * 22 20 18 25 25 H 1.48503 * 109.47040 * 330.51970 * 22 20 18 26 26 C 1.46965 * 118.81291 * 304.64605 * 15 14 13 27 27 C 1.46969 * 120.59172 * 175.13052 * 12 10 9 28 28 H 1.09002 * 109.47423 * 269.72559 * 1 2 3 29 29 H 1.08999 * 109.47972 * 149.71793 * 1 2 3 30 30 H 1.09006 * 109.47234 * 29.71673 * 1 2 3 31 31 H 1.07996 * 119.92086 * 0.02763 * 3 2 1 32 32 H 1.07995 * 119.83222 * 180.27817 * 4 3 2 33 33 H 1.07999 * 119.91103 * 179.76775 * 5 4 3 34 34 H 1.07997 * 120.09010 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.99799 * 310.76394 * 8 7 2 36 36 H 1.08007 * 119.99731 * 169.81792 * 9 8 7 37 37 H 1.08998 * 109.60856 * 244.54373 * 13 12 10 38 38 H 1.09006 * 109.61064 * 5.04894 * 13 12 10 39 39 H 1.09004 * 109.74122 * 289.84910 * 14 13 12 40 40 H 1.09000 * 109.53596 * 169.30138 * 14 13 12 41 41 H 0.97001 * 120.00685 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.60723 * 295.48326 * 26 15 14 43 43 H 1.09001 * 109.75106 * 175.05369 * 26 15 14 44 44 H 1.09000 * 109.60857 * 354.94908 * 27 12 10 45 45 H 1.08997 * 109.60654 * 115.45938 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 6 3.5822 1.1952 0.0048 5 6 4.2832 0.0015 -0.0011 6 6 3.6063 -1.1995 -0.0064 7 6 2.2078 -1.2098 -0.0060 8 6 1.4774 -2.4880 -0.0117 9 6 1.8044 -3.4471 -0.9006 10 6 2.7245 -3.1446 -1.9989 11 8 3.0922 -1.9999 -2.1868 12 7 3.1640 -4.1341 -2.8017 13 6 2.8193 -5.5347 -2.5200 14 6 2.1493 -6.1305 -3.7697 15 7 2.9869 -5.8286 -4.9390 16 6 3.4272 -6.8180 -5.7413 17 8 4.1937 -6.5670 -6.6523 18 6 2.9831 -8.1946 -5.5167 19 1 2.6843 -8.5112 -4.5284 20 6 2.9457 -9.1012 -6.5836 21 7 2.5512 -10.3306 -6.3828 22 14 3.4598 -8.5528 -8.2937 23 1 4.9132 -8.7976 -8.4759 24 1 2.6972 -9.3212 -9.3101 25 1 3.1779 -7.1037 -8.4545 26 6 3.3362 -4.4285 -5.2175 27 6 4.0016 -3.8321 -3.9710 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3635 -0.8874 -0.5182 30 1 -0.3634 0.8926 -0.5095 31 1 1.6585 2.1286 0.0005 32 1 4.1181 2.1328 0.0093 33 1 5.3631 0.0112 -0.0011 34 1 4.1546 -2.1300 -0.0106 35 1 0.6795 -2.6571 0.6963 36 1 1.3879 -4.4388 -0.8027 37 1 3.7249 -6.0941 -2.2852 38 1 2.1298 -5.5793 -1.6769 39 1 1.1616 -5.6895 -3.9036 40 1 2.0579 -7.2105 -3.6544 41 1 2.5256 -10.9586 -7.1216 42 1 2.4329 -3.8663 -5.4545 43 1 4.0275 -4.3816 -6.0590 44 1 4.0930 -2.7521 -4.0864 45 1 4.9893 -4.2731 -3.8371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493752631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:19 Heat of formation + Delta-G solvation = -12.584636 kcal Electronic energy + Delta-G solvation = -27693.901604 eV Core-core repulsion = 23870.095600 eV Total energy + Delta-G solvation = -3823.806004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36277 -39.24772 -38.18564 -36.21638 -34.11386 -33.24589 -32.89110 -32.69533 -31.26876 -29.77149 -27.68734 -26.98129 -26.31567 -24.34422 -23.23136 -22.42477 -21.44982 -20.85389 -19.41465 -18.26931 -17.67543 -16.58883 -16.39388 -15.87325 -15.67549 -15.43716 -15.15327 -14.90013 -14.67260 -14.30436 -14.18243 -14.07780 -13.70087 -13.45763 -13.27798 -13.01972 -12.65303 -12.54167 -12.43810 -12.30954 -12.22622 -11.96378 -11.82241 -11.19484 -11.17860 -11.13711 -11.07023 -11.02679 -10.82222 -10.41722 -10.02388 -9.65300 -9.54014 -9.06507 -8.83177 -8.55937 -8.21940 -8.00646 -7.52632 -6.65286 -4.86504 0.69572 1.44196 1.76402 3.07560 3.32429 3.39451 3.43397 3.69276 3.79491 4.10555 4.12655 4.45541 4.54878 4.55705 4.76588 4.83120 4.99786 5.03786 5.17009 5.18282 5.26400 5.30256 5.37669 5.40604 5.46732 5.51969 5.57735 5.68335 5.74029 5.76679 5.89780 5.93792 5.99802 6.06911 6.12949 6.16227 6.22536 6.35850 6.46687 6.52388 6.58041 6.65367 6.97796 7.00171 7.49738 7.54378 7.80419 8.23767 8.29222 8.64872 9.04510 9.91618 10.36347 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002607 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.316733 B =10736.354365 C =11144.205796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.111 4.111 5 C -0.133 4.133 6 C -0.045 4.045 7 C -0.060 4.060 8 C -0.029 4.029 9 C -0.207 4.207 10 C 0.537 3.463 11 O -0.533 6.533 12 N -0.602 5.602 13 C 0.087 3.913 14 C 0.107 3.893 15 N -0.632 5.632 16 C 0.558 3.442 17 O -0.608 6.608 18 C -0.536 4.536 19 H 0.092 0.908 20 C 0.102 3.898 21 N -0.834 5.834 22 Si 0.947 3.053 23 H -0.278 1.278 24 H -0.316 1.316 25 H -0.252 1.252 26 C 0.105 3.895 27 C 0.100 3.900 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.111 0.889 41 H 0.282 0.718 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 16.688 16.157 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.150 4.150 4 C -0.129 4.129 5 C -0.151 4.151 6 C -0.063 4.063 7 C -0.060 4.060 8 C -0.049 4.049 9 C -0.227 4.227 10 C 0.328 3.672 11 O -0.413 6.413 12 N -0.334 5.334 13 C -0.036 4.036 14 C -0.018 4.018 15 N -0.367 5.367 16 C 0.366 3.634 17 O -0.498 6.498 18 C -0.572 4.572 19 H 0.109 0.891 20 C -0.114 4.114 21 N -0.464 5.464 22 Si 0.778 3.222 23 H -0.203 1.203 24 H -0.246 1.246 25 H -0.176 1.176 26 C -0.020 4.020 27 C -0.023 4.023 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.520 17.204 15.538 23.448 hybrid contribution 0.168 -0.138 -0.706 0.738 sum -3.353 17.067 14.832 22.858 Atomic orbital electron populations 1.20795 0.91432 1.02876 1.02022 1.19901 0.95528 0.92315 0.99374 1.20807 0.94230 0.97075 1.02866 1.21117 0.94216 0.97803 0.99733 1.20912 0.99556 0.92483 1.02139 1.20996 0.92738 0.97674 0.94878 1.18711 0.93215 0.92092 1.02027 1.22341 0.95269 0.91438 0.95858 1.23177 1.02332 1.00274 0.96925 1.18447 0.80936 0.84856 0.82970 1.90873 1.58252 1.20021 1.72105 1.48060 1.51067 1.06973 1.27348 1.22472 1.01073 0.81176 0.98914 1.21951 0.92836 1.02778 0.84237 1.47797 1.54513 1.05190 1.29176 1.18442 0.79630 0.85651 0.79657 1.90340 1.39920 1.84143 1.35425 1.20682 1.46575 0.91604 0.98316 0.89066 1.25655 0.90227 0.93589 1.01978 1.69517 1.37723 1.04406 1.34794 0.85607 0.78349 0.79431 0.78844 1.20342 1.24644 1.17631 1.21630 0.99773 0.83588 0.96989 1.22038 0.93618 1.01746 0.84892 0.91244 0.91536 0.91570 0.86483 0.86586 0.86535 0.87049 0.84784 0.84505 0.90706 0.89163 0.92751 0.87109 0.90836 0.92937 0.88477 0.88775 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.62 36.00 0.35 -0.61 16 2 C -0.07 -0.79 5.92 -104.15 -0.62 -1.40 16 3 C -0.13 -1.40 9.69 -39.65 -0.38 -1.79 16 4 C -0.11 -1.20 10.04 -39.46 -0.40 -1.59 16 5 C -0.13 -1.56 10.03 -39.65 -0.40 -1.96 16 6 C -0.04 -0.56 6.79 -39.11 -0.27 -0.83 16 7 C -0.06 -0.72 4.31 -105.05 -0.45 -1.17 16 8 C -0.03 -0.29 8.26 -37.16 -0.31 -0.60 16 9 C -0.21 -2.22 9.23 -37.50 -0.35 -2.56 16 10 C 0.54 7.61 6.87 -12.96 -0.09 7.52 16 11 O -0.53 -8.88 11.89 5.19 0.06 -8.82 16 12 N -0.60 -8.68 2.94 -173.85 -0.51 -9.19 16 13 C 0.09 1.15 6.54 -3.37 -0.02 1.13 16 14 C 0.11 1.75 6.50 -3.37 -0.02 1.73 16 15 N -0.63 -12.99 2.95 -173.87 -0.51 -13.50 16 16 C 0.56 14.24 7.12 -12.99 -0.09 14.15 16 17 O -0.61 -17.09 11.91 5.21 0.06 -17.02 16 18 C -0.54 -14.37 9.21 -35.63 -0.33 -14.70 16 19 H 0.09 2.39 6.23 -52.49 -0.33 2.07 16 20 C 0.10 2.83 5.52 -17.37 -0.10 2.74 16 21 N -0.83 -23.05 13.92 55.55 0.77 -22.28 16 22 Si 0.95 24.36 26.29 -169.99 -4.47 19.89 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.32 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.25 -6.82 6.19 56.52 0.35 -6.47 16 26 C 0.10 1.90 6.59 -3.60 -0.02 1.87 16 27 C 0.10 1.58 6.58 -3.60 -0.02 1.56 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.56 7.09 -51.93 -0.37 0.19 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.11 1.41 7.52 -52.49 -0.39 1.02 16 35 H 0.13 0.91 8.05 -52.49 -0.42 0.49 16 36 H 0.14 1.12 5.93 -52.48 -0.31 0.81 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.88 5.31 -51.93 -0.28 0.60 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.93 5.46 -51.93 -0.28 1.65 16 41 H 0.28 7.20 8.29 -40.82 -0.34 6.86 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 1.91 7.00 -51.93 -0.36 1.54 16 44 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -33.45 359.97 -8.79 -42.23 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.10 Total: -0.21 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -3.52 Total: 3.47 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.25 Total: -44.97 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.12 Total: -25.85 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.47 Total: 19.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.45 -8.79 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493752631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.648 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds