Wall clock time and date at job start Tue Mar 31 2020 14:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37910 * 120.08829 * 2 1 4 4 C 1.38384 * 120.16808 * 179.77036 * 3 2 1 5 5 C 1.38431 * 120.34262 * 0.51478 * 4 3 2 6 6 C 1.37865 * 120.17404 * 359.73951 * 5 4 3 7 7 C 1.39816 * 120.08159 * 180.28212 * 2 1 3 8 8 C 1.47211 * 120.17306 * 359.97438 * 7 2 1 9 9 C 1.34805 * 119.99791 * 130.76035 * 8 7 2 10 10 C 1.46429 * 120.00264 * 349.81861 * 9 8 7 11 11 O 1.21693 * 120.00083 * 352.88685 * 10 9 8 12 12 N 1.34782 * 119.99883 * 172.88633 * 10 9 8 13 13 C 1.46962 * 120.59537 * 354.85154 * 12 10 9 14 14 C 1.53808 * 108.39979 * 124.75689 * 13 12 10 15 15 N 1.46969 * 108.57748 * 49.63669 * 14 13 12 16 16 C 1.34777 * 120.59301 * 124.62813 * 15 14 13 17 17 O 1.21680 * 120.00228 * 185.01377 * 16 15 14 18 18 C 1.46377 * 119.99763 * 5.01238 * 16 15 14 19 19 H 1.07999 * 120.00275 * 333.29002 * 18 16 15 20 20 C 1.40051 * 119.99848 * 153.28883 * 18 16 15 21 21 N 1.30665 * 120.00479 * 179.89898 * 20 18 16 22 22 Si 1.86805 * 120.00025 * 359.89780 * 20 18 16 23 23 H 1.48503 * 109.47039 * 90.51708 * 22 20 18 24 24 H 1.48491 * 109.47524 * 210.52029 * 22 20 18 25 25 H 1.48503 * 109.47040 * 330.51970 * 22 20 18 26 26 C 1.46965 * 118.81291 * 304.64605 * 15 14 13 27 27 C 1.46969 * 120.59172 * 175.13052 * 12 10 9 28 28 H 1.09002 * 109.47423 * 269.72559 * 1 2 3 29 29 H 1.08999 * 109.47972 * 149.71793 * 1 2 3 30 30 H 1.09006 * 109.47234 * 29.71673 * 1 2 3 31 31 H 1.07996 * 119.92086 * 0.02763 * 3 2 1 32 32 H 1.07995 * 119.83222 * 180.27817 * 4 3 2 33 33 H 1.07999 * 119.91103 * 179.76775 * 5 4 3 34 34 H 1.07997 * 120.09010 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.99799 * 310.76394 * 8 7 2 36 36 H 1.08007 * 119.99731 * 169.81792 * 9 8 7 37 37 H 1.08998 * 109.60856 * 244.54373 * 13 12 10 38 38 H 1.09006 * 109.61064 * 5.04894 * 13 12 10 39 39 H 1.09004 * 109.74122 * 289.84910 * 14 13 12 40 40 H 1.09000 * 109.53596 * 169.30138 * 14 13 12 41 41 H 0.97001 * 120.00685 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.60723 * 295.48326 * 26 15 14 43 43 H 1.09001 * 109.75106 * 175.05369 * 26 15 14 44 44 H 1.09000 * 109.60857 * 354.94908 * 27 12 10 45 45 H 1.08997 * 109.60654 * 115.45938 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 6 3.5822 1.1952 0.0048 5 6 4.2832 0.0015 -0.0011 6 6 3.6063 -1.1995 -0.0064 7 6 2.2078 -1.2098 -0.0060 8 6 1.4774 -2.4880 -0.0117 9 6 1.8044 -3.4471 -0.9006 10 6 2.7245 -3.1446 -1.9989 11 8 3.0922 -1.9999 -2.1868 12 7 3.1640 -4.1341 -2.8017 13 6 2.8193 -5.5347 -2.5200 14 6 2.1493 -6.1305 -3.7697 15 7 2.9869 -5.8286 -4.9390 16 6 3.4272 -6.8180 -5.7413 17 8 4.1937 -6.5670 -6.6523 18 6 2.9831 -8.1946 -5.5167 19 1 2.6843 -8.5112 -4.5284 20 6 2.9457 -9.1012 -6.5836 21 7 2.5512 -10.3306 -6.3828 22 14 3.4598 -8.5528 -8.2937 23 1 4.9132 -8.7976 -8.4759 24 1 2.6972 -9.3212 -9.3101 25 1 3.1779 -7.1037 -8.4545 26 6 3.3362 -4.4285 -5.2175 27 6 4.0016 -3.8321 -3.9710 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3635 -0.8874 -0.5182 30 1 -0.3634 0.8926 -0.5095 31 1 1.6585 2.1286 0.0005 32 1 4.1181 2.1328 0.0093 33 1 5.3631 0.0112 -0.0011 34 1 4.1546 -2.1300 -0.0106 35 1 0.6795 -2.6571 0.6963 36 1 1.3879 -4.4388 -0.8027 37 1 3.7249 -6.0941 -2.2852 38 1 2.1298 -5.5793 -1.6769 39 1 1.1616 -5.6895 -3.9036 40 1 2.0579 -7.2105 -3.6544 41 1 2.5256 -10.9586 -7.1216 42 1 2.4329 -3.8663 -5.4545 43 1 4.0275 -4.3816 -6.0590 44 1 4.0930 -2.7521 -4.0864 45 1 4.9893 -4.2731 -3.8371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493752631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:18 Heat of formation + Delta-G solvation = -32.460691 kcal Electronic energy + Delta-G solvation = -27694.763495 eV Core-core repulsion = 23870.095600 eV Total energy + Delta-G solvation = -3824.667894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46911 -40.40345 -39.60872 -37.72380 -35.01322 -34.92807 -34.74329 -33.48144 -32.56904 -30.65376 -29.32205 -28.10942 -27.56809 -25.47153 -24.45946 -23.63740 -22.46137 -21.93510 -20.83931 -19.55781 -18.85604 -18.35759 -17.61040 -17.36984 -16.79523 -16.64620 -16.31168 -16.14308 -15.98564 -15.84366 -15.52525 -15.00950 -14.67790 -14.54012 -14.45789 -14.20607 -14.08031 -13.96512 -13.86209 -13.49139 -13.33100 -13.09145 -13.01600 -12.85963 -12.65204 -12.43438 -12.31212 -12.26828 -11.97012 -11.85590 -11.52891 -11.16931 -10.91234 -10.63774 -10.17425 -9.94693 -9.46427 -9.11887 -9.05998 -8.75708 -6.95636 -0.13191 0.60361 0.92757 1.31599 1.35828 1.61165 1.93358 2.06799 2.32063 2.34426 2.64223 2.96699 3.25490 3.59913 3.77387 3.91276 3.95263 4.02613 4.06170 4.16036 4.21763 4.26870 4.40610 4.43839 4.48182 4.61281 4.64909 4.67808 4.76787 4.80909 4.83957 4.86556 4.99552 5.04984 5.10359 5.13425 5.20191 5.27519 5.37232 5.48133 5.66133 5.69316 5.70104 5.76642 5.94044 6.20177 6.21681 6.44836 6.64870 7.10163 7.21542 7.93502 8.29912 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002607 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.316733 B =10736.354365 C =11144.205796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.119 4.119 5 C -0.152 4.152 6 C -0.063 4.063 7 C -0.080 4.080 8 C -0.014 4.014 9 C -0.218 4.218 10 C 0.534 3.466 11 O -0.563 6.563 12 N -0.606 5.606 13 C 0.097 3.903 14 C 0.102 3.898 15 N -0.631 5.631 16 C 0.555 3.445 17 O -0.641 6.641 18 C -0.547 4.547 19 H 0.092 0.908 20 C 0.072 3.928 21 N -0.854 5.854 22 Si 0.988 3.012 23 H -0.289 1.289 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.108 3.892 27 C 0.113 3.887 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.070 0.930 38 H 0.135 0.865 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.290 0.710 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 17.656 18.014 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.160 4.160 4 C -0.137 4.137 5 C -0.170 4.170 6 C -0.082 4.082 7 C -0.080 4.080 8 C -0.033 4.033 9 C -0.238 4.238 10 C 0.327 3.673 11 O -0.444 6.444 12 N -0.338 5.338 13 C -0.026 4.026 14 C -0.022 4.022 15 N -0.365 5.365 16 C 0.361 3.639 17 O -0.533 6.533 18 C -0.584 4.584 19 H 0.110 0.890 20 C -0.143 4.143 21 N -0.486 5.486 22 Si 0.819 3.181 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.202 1.202 26 C -0.017 4.017 27 C -0.012 4.012 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.407 18.168 17.434 25.754 hybrid contribution 0.748 -0.283 -1.200 1.442 sum -4.659 17.885 16.234 24.599 Atomic orbital electron populations 1.20842 0.89401 1.03248 1.03416 1.20309 0.97144 0.92118 0.98574 1.21172 0.94379 0.98100 1.02335 1.21417 0.94758 0.98265 0.99269 1.21141 1.00203 0.92925 1.02742 1.21068 0.93543 0.97543 0.95999 1.19033 0.93154 0.93573 1.02290 1.22710 0.94969 0.89957 0.95696 1.23226 1.02260 1.02022 0.96283 1.19061 0.80739 0.84166 0.83370 1.90867 1.59328 1.21241 1.72943 1.48109 1.51026 1.07697 1.26980 1.22482 1.01621 0.80034 0.98426 1.22182 0.93331 1.02663 0.83996 1.47745 1.53974 1.05260 1.29484 1.18396 0.79307 0.86332 0.79874 1.90313 1.41312 1.84777 1.36927 1.20894 1.46586 0.92510 0.98408 0.88972 1.26084 0.90655 0.93923 1.03643 1.69518 1.38616 1.04732 1.35709 0.85022 0.77530 0.77766 0.77807 1.21521 1.22568 1.20205 1.21678 0.99939 0.82392 0.97643 1.21749 0.93343 1.01415 0.84644 0.89228 0.91442 0.90937 0.84403 0.84681 0.85932 0.88037 0.81106 0.81458 0.91189 0.84770 0.91031 0.88185 0.89980 0.91911 0.90520 0.88642 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.62 71.23 0.69 -0.83 16 2 C -0.08 -1.62 5.92 -19.56 -0.12 -1.74 16 3 C -0.14 -2.78 9.69 22.23 0.22 -2.56 16 4 C -0.12 -2.46 10.04 22.35 0.22 -2.23 16 5 C -0.15 -3.55 10.03 22.23 0.22 -3.33 16 6 C -0.06 -1.57 6.79 22.58 0.15 -1.42 16 7 C -0.08 -1.77 4.31 -20.14 -0.09 -1.85 16 8 C -0.01 -0.23 8.26 23.84 0.20 -0.03 16 9 C -0.22 -3.92 9.23 23.62 0.22 -3.70 16 10 C 0.53 14.07 6.87 86.38 0.59 14.67 16 11 O -0.56 -18.25 11.89 -4.33 -0.05 -18.30 16 12 N -0.61 -16.40 2.94 -822.16 -2.42 -18.82 16 13 C 0.10 2.31 6.54 86.56 0.57 2.87 16 14 C 0.10 3.16 6.50 86.56 0.56 3.72 16 15 N -0.63 -25.69 2.95 -822.24 -2.42 -28.11 16 16 C 0.55 28.51 7.12 86.36 0.61 29.12 16 17 O -0.64 -36.63 11.91 -4.28 -0.05 -36.68 16 18 C -0.55 -29.47 9.21 24.83 0.23 -29.24 16 19 H 0.09 4.84 6.23 -2.91 -0.02 4.82 16 20 C 0.07 3.97 5.52 85.31 0.47 4.44 16 21 N -0.85 -46.94 13.92 21.84 0.30 -46.63 16 22 Si 0.99 50.54 26.29 68.60 1.80 52.34 16 23 H -0.29 -15.12 7.11 99.48 0.71 -14.42 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.28 -15.13 6.19 99.48 0.62 -14.51 16 26 C 0.11 3.88 6.59 86.41 0.57 4.45 16 27 C 0.11 3.50 6.58 86.41 0.57 4.06 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.90 7.09 -2.39 -0.02 0.88 16 30 H 0.07 0.88 8.08 -2.38 -0.02 0.86 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.10 2.59 7.52 -2.91 -0.02 2.57 16 35 H 0.17 1.49 8.05 -2.91 -0.02 1.47 16 36 H 0.17 1.89 5.93 -2.91 -0.02 1.87 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.13 2.01 5.31 -2.38 -0.01 2.00 16 39 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.10 3.36 5.46 -2.39 -0.01 3.35 16 41 H 0.29 14.66 8.29 -92.71 -0.77 13.89 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.08 3.08 7.00 -2.39 -0.02 3.07 16 44 H 0.10 2.96 7.02 -2.39 -0.02 2.94 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -73.08 359.97 3.97 -69.11 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.92 Total: 10.71 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 5.89 Total: 16.39 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -4.54 Total: -93.56 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.10 Total: -54.98 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.80 Total: 52.34 kcal Total: -73.08 3.97 -69.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493752631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.647 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds