Wall clock time and date at job start Tue Mar 31 2020 15:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36314 * 120.85179 * 2 1 4 4 C 1.40084 * 119.90163 * 180.25836 * 3 2 1 5 5 O 1.35568 * 119.22145 * 179.73904 * 4 3 2 6 6 N 1.31497 * 121.55624 * 359.46997 * 4 3 2 7 7 C 1.33828 * 121.28479 * 0.27338 * 6 4 3 8 8 C 1.40407 * 120.82165 * 179.97438 * 7 6 4 9 9 C 1.38455 * 119.54566 * 180.02562 * 8 7 6 10 10 C 1.47876 * 119.72352 * 180.02562 * 9 8 7 11 11 O 1.21549 * 119.99932 * 330.02503 * 10 9 8 12 12 N 1.34775 * 120.00025 * 150.02062 * 10 9 8 13 13 C 1.46502 * 119.99997 * 6.32478 * 12 10 9 14 14 C 1.50705 * 109.47256 * 98.28863 * 13 12 10 15 15 H 1.07993 * 119.99802 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00070 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00038 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99758 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47050 * 90.00107 * 18 16 14 20 20 H 1.48504 * 109.47039 * 210.00081 * 18 16 14 21 21 H 1.48502 * 109.47179 * 330.00282 * 18 16 14 22 22 C 1.46502 * 119.99842 * 186.31702 * 12 10 9 23 23 C 1.53002 * 109.46543 * 123.98485 * 22 12 10 24 24 C 1.52996 * 109.47193 * 243.98182 * 22 12 10 25 25 C 1.40529 * 120.55619 * 0.02562 * 9 8 7 26 26 C 1.35863 * 120.72700 * 359.97438 * 25 9 8 27 27 C 1.40494 * 120.00174 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47165 * 270.24063 * 1 2 3 29 29 H 1.09004 * 109.46909 * 30.23795 * 1 2 3 30 30 H 1.08997 * 109.46911 * 150.23261 * 1 2 3 31 31 H 1.07999 * 120.04729 * 0.02715 * 3 2 1 32 32 H 0.96698 * 114.00515 * 269.73104 * 5 4 3 33 33 H 1.08001 * 120.22822 * 0.02562 * 8 7 6 34 34 H 1.08998 * 109.46767 * 218.28844 * 13 12 10 35 35 H 1.09001 * 109.47176 * 338.28575 * 13 12 10 36 36 H 0.97003 * 120.00259 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.47152 * 3.98707 * 22 12 10 38 38 H 1.08993 * 109.47576 * 59.99869 * 23 22 12 39 39 H 1.09003 * 109.47197 * 180.02562 * 23 22 12 40 40 H 1.09000 * 109.47103 * 299.99906 * 23 22 12 41 41 H 1.08996 * 109.46945 * 60.00374 * 24 22 12 42 42 H 1.09005 * 109.47021 * 180.02562 * 24 22 12 43 43 H 1.09001 * 109.47544 * 299.99870 * 24 22 12 44 44 H 1.08004 * 119.63990 * 180.02562 * 25 9 8 45 45 H 1.07995 * 119.99873 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1702 0.0000 4 6 3.6067 1.1470 -0.0055 5 8 4.2880 2.3190 -0.0108 6 7 4.2762 0.0153 -0.0003 7 6 3.6457 -1.1652 0.0050 8 6 4.3704 -2.3678 0.0099 9 6 3.6910 -3.5742 0.0148 10 6 4.4503 -4.8432 0.0205 11 8 5.5450 -4.8987 -0.5047 12 7 3.9284 -5.9380 0.6082 13 6 2.5554 -5.9114 1.1185 14 6 1.6316 -6.5411 0.1079 15 1 2.0277 -6.9233 -0.8213 16 6 0.2807 -6.6292 0.3696 17 7 -0.5254 -7.1783 -0.5125 18 14 -0.4042 -5.9688 1.9771 19 1 -0.7832 -4.5433 1.8052 20 1 -1.6020 -6.7560 2.3654 21 1 0.6280 -6.0819 3.0387 22 6 4.7341 -7.1548 0.7366 23 6 4.7999 -7.5699 2.2078 24 6 4.0953 -8.2783 -0.0822 25 6 2.2860 -3.6030 0.0142 26 6 1.5681 -2.4495 0.0095 27 6 2.2298 -1.2102 0.0056 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6808 2.1139 0.0004 32 1 4.4858 2.6551 -0.8957 33 1 5.4502 -2.3519 0.0099 34 1 2.5046 -6.4686 2.0539 35 1 2.2528 -4.8790 1.2936 36 1 -1.4758 -7.2406 -0.3283 37 1 5.7418 -6.9639 0.3676 38 1 3.7923 -7.7607 2.5769 39 1 5.3997 -8.4750 2.3035 40 1 5.2550 -6.7695 2.7912 41 1 4.0485 -7.9825 -1.1302 42 1 4.6946 -9.1837 0.0137 43 1 3.0877 -8.4692 0.2869 44 1 1.7712 -4.5524 0.0185 45 1 0.4887 -2.4854 0.0095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577021308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:14 Heat of formation + Delta-G solvation = 2.818216 kcal Electronic energy + Delta-G solvation = -28439.438432 eV Core-core repulsion = 24616.300346 eV Total energy + Delta-G solvation = -3823.138086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.03453 -39.70856 -37.96678 -36.10857 -35.82498 -34.53508 -33.13562 -31.85287 -30.19676 -29.50535 -28.24337 -27.86084 -26.70005 -24.46141 -23.46798 -22.68409 -21.35634 -20.96793 -19.02610 -18.76784 -17.68265 -17.17824 -17.16910 -16.38727 -15.79176 -15.55755 -14.73008 -14.59812 -14.41594 -14.15137 -13.94085 -13.75887 -13.48257 -13.38903 -13.08323 -12.98745 -12.74782 -12.69623 -12.46013 -11.98117 -11.90434 -11.79175 -11.63124 -11.54452 -11.21025 -11.10045 -10.98470 -10.86248 -10.35162 -10.27701 -10.14881 -10.00922 -9.61876 -9.46074 -9.24311 -8.92638 -8.46870 -8.02178 -7.80719 -6.41140 -4.43276 0.38030 0.76897 1.98885 2.70661 3.02767 3.13427 3.16101 3.36285 3.60096 3.71663 4.08695 4.22548 4.47093 4.55365 4.79657 4.86025 4.97490 5.10783 5.20641 5.25281 5.42666 5.45802 5.53391 5.60103 5.62186 5.66863 5.75943 5.88701 6.00290 6.08332 6.10510 6.14644 6.19662 6.28352 6.36677 6.42648 6.45893 6.58946 6.69474 6.75282 6.77010 7.04681 7.09623 7.18194 7.33055 7.39263 7.91238 7.96367 8.25940 8.67453 8.76130 9.15567 10.69319 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.004639 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.265619 B = 6034.267134 C = 7755.843841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.013 4.013 3 C -0.190 4.190 4 C 0.329 3.671 5 O -0.484 6.484 6 N -0.490 5.490 7 C 0.136 3.864 8 C -0.045 4.045 9 C -0.095 4.095 10 C 0.558 3.442 11 O -0.559 6.559 12 N -0.576 5.576 13 C 0.175 3.825 14 C -0.543 4.543 15 H 0.090 0.910 16 C 0.082 3.918 17 N -0.876 5.876 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.260 1.260 22 C 0.139 3.861 23 C -0.160 4.160 24 C -0.158 4.158 25 C -0.108 4.108 26 C -0.117 4.117 27 C -0.091 4.091 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.399 0.601 33 H 0.143 0.857 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.270 0.730 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.204 0.796 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 11.221 2.529 11.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.021 4.021 3 C -0.211 4.211 4 C 0.135 3.865 5 O -0.291 6.291 6 N -0.209 5.209 7 C 0.015 3.985 8 C -0.065 4.065 9 C -0.099 4.099 10 C 0.346 3.654 11 O -0.440 6.440 12 N -0.305 5.305 13 C 0.055 3.945 14 C -0.581 4.581 15 H 0.108 0.892 16 C -0.123 4.123 17 N -0.511 5.511 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.185 1.185 22 C 0.036 3.964 23 C -0.218 4.218 24 C -0.215 4.215 25 C -0.124 4.124 26 C -0.136 4.136 27 C -0.093 4.093 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.256 0.744 33 H 0.161 0.839 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.220 0.780 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.731 11.000 2.839 11.684 hybrid contribution -1.384 0.506 0.332 1.511 sum 1.346 11.507 3.171 12.011 Atomic orbital electron populations 1.20914 0.89633 1.03880 1.03384 1.20100 0.96794 0.91557 0.93636 1.21628 0.93773 0.99348 1.06401 1.19202 0.87026 0.84920 0.95389 1.84739 1.77183 1.33356 1.33840 1.67408 1.41151 0.97681 1.14694 1.18252 0.89460 0.90659 1.00108 1.21068 1.00507 0.88705 0.96240 1.20039 0.94345 0.93340 1.02213 1.18162 0.85066 0.83620 0.78538 1.90697 1.21767 1.85351 1.46211 1.47837 1.15095 1.10831 1.56738 1.20714 0.78719 0.98987 0.96109 1.21417 0.91398 1.40136 1.05146 0.89209 1.24906 0.96793 0.94416 0.96225 1.69873 1.04664 1.42042 1.34569 0.87145 0.79852 0.80046 0.84825 1.19225 1.20503 1.18463 1.20910 0.95412 0.84715 0.95372 1.22134 1.02577 1.00884 0.96194 1.22205 1.02790 0.96194 1.00347 1.23195 0.93421 1.03397 0.92408 1.20990 1.00375 0.90539 1.01669 1.18900 0.93716 0.94545 1.02148 0.90002 0.90703 0.90071 0.84310 0.74369 0.83935 0.94577 0.92806 0.91989 0.89400 0.91598 0.91939 0.92994 0.92726 0.93385 0.89524 0.77998 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.58 36.01 0.34 -0.84 16 2 C -0.01 -0.17 5.92 -104.28 -0.62 -0.79 16 3 C -0.19 -2.29 9.64 -39.58 -0.38 -2.67 16 4 C 0.33 4.59 7.72 -17.00 -0.13 4.46 16 5 O -0.48 -5.54 13.55 -18.40 -0.25 -5.79 16 6 N -0.49 -8.23 10.36 -11.06 -0.11 -8.35 16 7 C 0.14 2.37 6.60 -84.87 -0.56 1.81 16 8 C -0.05 -0.84 9.55 -38.69 -0.37 -1.21 16 9 C -0.09 -1.84 5.57 -105.01 -0.59 -2.43 16 10 C 0.56 11.74 7.45 -12.32 -0.09 11.64 16 11 O -0.56 -12.76 16.03 5.32 0.09 -12.68 16 12 N -0.58 -11.59 2.44 -168.56 -0.41 -12.00 16 13 C 0.18 3.64 3.44 -5.19 -0.02 3.62 16 14 C -0.54 -12.84 6.13 -34.44 -0.21 -13.05 16 15 H 0.09 2.39 7.02 -52.49 -0.37 2.02 16 16 C 0.08 2.00 5.34 -17.82 -0.10 1.91 16 17 N -0.88 -23.13 13.96 55.43 0.77 -22.36 16 18 Si 0.86 17.92 27.35 -169.99 -4.65 13.27 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 22 C 0.14 2.50 3.24 -67.93 -0.22 2.28 16 23 C -0.16 -2.43 9.06 37.16 0.34 -2.10 16 24 C -0.16 -2.82 8.14 37.16 0.30 -2.52 16 25 C -0.11 -2.05 7.37 -39.57 -0.29 -2.34 16 26 C -0.12 -1.96 9.28 -39.58 -0.37 -2.32 16 27 C -0.09 -1.46 5.75 -106.71 -0.61 -2.07 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.08 0.81 6.49 -51.93 -0.34 0.47 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.40 2.45 9.06 45.56 0.41 2.86 16 33 H 0.14 2.58 7.89 -52.49 -0.41 2.17 16 34 H 0.04 0.74 5.38 -51.93 -0.28 0.46 16 35 H 0.05 1.11 3.48 -52.07 -0.18 0.93 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.09 1.62 6.94 -51.93 -0.36 1.26 16 38 H 0.07 1.04 6.64 -51.93 -0.34 0.70 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.06 8.01 -51.93 -0.42 0.64 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.72 6.40 -51.93 -0.33 1.39 16 44 H 0.20 4.24 2.84 -52.48 -0.15 4.10 16 45 H 0.13 1.99 6.40 -52.49 -0.34 1.66 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -29.65 357.80 -7.55 -37.20 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -4.81 Total: 11.93 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.57 Total: -6.61 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.25 Total: -42.71 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.16 Total: -18.46 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -4.65 Total: 13.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.65 -7.55 -37.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577021308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.016 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds