Wall clock time and date at job start Tue Mar 31 2020 15:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36314 * 120.85179 * 2 1 4 4 C 1.40084 * 119.90163 * 180.25836 * 3 2 1 5 5 O 1.35568 * 119.22145 * 179.73904 * 4 3 2 6 6 N 1.31497 * 121.55624 * 359.46997 * 4 3 2 7 7 C 1.33828 * 121.28479 * 0.27338 * 6 4 3 8 8 C 1.40407 * 120.82165 * 179.97438 * 7 6 4 9 9 C 1.38455 * 119.54566 * 180.02562 * 8 7 6 10 10 C 1.47876 * 119.72352 * 180.02562 * 9 8 7 11 11 O 1.21549 * 119.99932 * 330.02503 * 10 9 8 12 12 N 1.34775 * 120.00025 * 150.02062 * 10 9 8 13 13 C 1.46502 * 119.99997 * 6.32478 * 12 10 9 14 14 C 1.50705 * 109.47256 * 98.28863 * 13 12 10 15 15 H 1.07993 * 119.99802 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00070 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00038 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99758 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47050 * 90.00107 * 18 16 14 20 20 H 1.48504 * 109.47039 * 210.00081 * 18 16 14 21 21 H 1.48502 * 109.47179 * 330.00282 * 18 16 14 22 22 C 1.46502 * 119.99842 * 186.31702 * 12 10 9 23 23 C 1.53002 * 109.46543 * 123.98485 * 22 12 10 24 24 C 1.52996 * 109.47193 * 243.98182 * 22 12 10 25 25 C 1.40529 * 120.55619 * 0.02562 * 9 8 7 26 26 C 1.35863 * 120.72700 * 359.97438 * 25 9 8 27 27 C 1.40494 * 120.00174 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47165 * 270.24063 * 1 2 3 29 29 H 1.09004 * 109.46909 * 30.23795 * 1 2 3 30 30 H 1.08997 * 109.46911 * 150.23261 * 1 2 3 31 31 H 1.07999 * 120.04729 * 0.02715 * 3 2 1 32 32 H 0.96698 * 114.00515 * 269.73104 * 5 4 3 33 33 H 1.08001 * 120.22822 * 0.02562 * 8 7 6 34 34 H 1.08998 * 109.46767 * 218.28844 * 13 12 10 35 35 H 1.09001 * 109.47176 * 338.28575 * 13 12 10 36 36 H 0.97003 * 120.00259 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.47152 * 3.98707 * 22 12 10 38 38 H 1.08993 * 109.47576 * 59.99869 * 23 22 12 39 39 H 1.09003 * 109.47197 * 180.02562 * 23 22 12 40 40 H 1.09000 * 109.47103 * 299.99906 * 23 22 12 41 41 H 1.08996 * 109.46945 * 60.00374 * 24 22 12 42 42 H 1.09005 * 109.47021 * 180.02562 * 24 22 12 43 43 H 1.09001 * 109.47544 * 299.99870 * 24 22 12 44 44 H 1.08004 * 119.63990 * 180.02562 * 25 9 8 45 45 H 1.07995 * 119.99873 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1702 0.0000 4 6 3.6067 1.1470 -0.0055 5 8 4.2880 2.3190 -0.0108 6 7 4.2762 0.0153 -0.0003 7 6 3.6457 -1.1652 0.0050 8 6 4.3704 -2.3678 0.0099 9 6 3.6910 -3.5742 0.0148 10 6 4.4503 -4.8432 0.0205 11 8 5.5450 -4.8987 -0.5047 12 7 3.9284 -5.9380 0.6082 13 6 2.5554 -5.9114 1.1185 14 6 1.6316 -6.5411 0.1079 15 1 2.0277 -6.9233 -0.8213 16 6 0.2807 -6.6292 0.3696 17 7 -0.5254 -7.1783 -0.5125 18 14 -0.4042 -5.9688 1.9771 19 1 -0.7832 -4.5433 1.8052 20 1 -1.6020 -6.7560 2.3654 21 1 0.6280 -6.0819 3.0387 22 6 4.7341 -7.1548 0.7366 23 6 4.7999 -7.5699 2.2078 24 6 4.0953 -8.2783 -0.0822 25 6 2.2860 -3.6030 0.0142 26 6 1.5681 -2.4495 0.0095 27 6 2.2298 -1.2102 0.0056 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6808 2.1139 0.0004 32 1 4.4858 2.6551 -0.8957 33 1 5.4502 -2.3519 0.0099 34 1 2.5046 -6.4686 2.0539 35 1 2.2528 -4.8790 1.2936 36 1 -1.4758 -7.2406 -0.3283 37 1 5.7418 -6.9639 0.3676 38 1 3.7923 -7.7607 2.5769 39 1 5.3997 -8.4750 2.3035 40 1 5.2550 -6.7695 2.7912 41 1 4.0485 -7.9825 -1.1302 42 1 4.6946 -9.1837 0.0137 43 1 3.0877 -8.4692 0.2869 44 1 1.7712 -4.5524 0.0185 45 1 0.4887 -2.4854 0.0095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577021308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:13 Heat of formation + Delta-G solvation = -18.115708 kcal Electronic energy + Delta-G solvation = -28440.346195 eV Core-core repulsion = 24616.300346 eV Total energy + Delta-G solvation = -3824.045849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27731 -41.17776 -39.10018 -37.73982 -37.02337 -35.63214 -34.87400 -33.40927 -31.52492 -30.75478 -29.93172 -28.82964 -28.08270 -25.78620 -24.77499 -24.36638 -22.68583 -22.19458 -20.38770 -20.01875 -19.05796 -18.95089 -18.34842 -17.81464 -17.08096 -16.92651 -16.34513 -16.00992 -15.78847 -15.41795 -15.24076 -15.00506 -14.85510 -14.80993 -14.52468 -14.09830 -14.01358 -13.85931 -13.79204 -13.41062 -13.17158 -12.97911 -12.94217 -12.73272 -12.61360 -12.58591 -12.38453 -12.34068 -11.94392 -11.82756 -11.55076 -11.41613 -11.21619 -10.90393 -10.75476 -10.53309 -9.76314 -9.52488 -9.21869 -8.28806 -6.35156 -0.83695 -0.44780 0.76076 1.36985 1.40620 1.44536 1.51726 1.99314 2.12103 2.33975 2.55963 2.92957 3.02589 3.34665 3.42614 3.60146 3.72601 3.93915 4.03053 4.06125 4.23249 4.26440 4.37676 4.39188 4.45181 4.57622 4.62667 4.73600 4.76414 4.81692 4.84792 4.86115 4.88768 5.00055 5.03707 5.06873 5.10572 5.29969 5.35045 5.38959 5.42974 5.44855 5.53106 5.68135 5.75688 6.16781 6.53683 6.57259 6.73089 6.82107 7.09949 7.28498 8.85387 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.004639 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.265619 B = 6034.267134 C = 7755.843841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.009 4.009 3 C -0.178 4.178 4 C 0.340 3.660 5 O -0.487 6.487 6 N -0.529 5.529 7 C 0.125 3.875 8 C -0.051 4.051 9 C -0.110 4.110 10 C 0.550 3.450 11 O -0.588 6.588 12 N -0.578 5.578 13 C 0.184 3.816 14 C -0.532 4.532 15 H 0.046 0.954 16 C 0.038 3.962 17 N -0.926 5.926 18 Si 0.911 3.089 19 H -0.245 1.245 20 H -0.285 1.285 21 H -0.246 1.246 22 C 0.130 3.870 23 C -0.151 4.151 24 C -0.146 4.146 25 C -0.133 4.133 26 C -0.100 4.100 27 C -0.103 4.103 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.181 0.819 32 H 0.424 0.576 33 H 0.134 0.866 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.271 0.729 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.184 0.816 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 14.319 4.269 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.016 4.016 3 C -0.198 4.198 4 C 0.146 3.854 5 O -0.298 6.298 6 N -0.250 5.250 7 C 0.006 3.994 8 C -0.071 4.071 9 C -0.115 4.115 10 C 0.340 3.660 11 O -0.471 6.471 12 N -0.306 5.306 13 C 0.063 3.937 14 C -0.570 4.570 15 H 0.064 0.936 16 C -0.163 4.163 17 N -0.564 5.564 18 Si 0.733 3.267 19 H -0.169 1.169 20 H -0.210 1.210 21 H -0.169 1.169 22 C 0.027 3.973 23 C -0.208 4.208 24 C -0.204 4.204 25 C -0.150 4.150 26 C -0.119 4.119 27 C -0.105 4.105 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.198 0.802 32 H 0.285 0.715 33 H 0.151 0.849 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.200 0.800 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.545 14.114 4.572 14.916 hybrid contribution -0.927 -0.232 -0.328 1.010 sum 0.619 13.882 4.244 14.529 Atomic orbital electron populations 1.21050 0.86887 1.05229 1.04676 1.20485 0.98602 0.90385 0.92144 1.22007 0.92808 1.00755 1.04279 1.19607 0.88132 0.84785 0.92915 1.84689 1.77052 1.31995 1.36030 1.67387 1.42207 0.98271 1.17108 1.18266 0.90239 0.90574 1.00363 1.21022 1.00164 0.89194 0.96746 1.19901 0.94622 0.92809 1.04165 1.18545 0.84938 0.84489 0.78047 1.90656 1.23023 1.85953 1.47489 1.47959 1.15050 1.11371 1.56249 1.20594 0.78402 0.99447 0.95280 1.21340 0.92056 1.39519 1.04101 0.93579 1.25578 0.96832 0.94508 0.99418 1.70012 1.05023 1.44393 1.36987 0.86258 0.79118 0.80445 0.80902 1.16894 1.21035 1.16949 1.21141 0.94703 0.83912 0.97531 1.22068 1.02864 1.02324 0.93585 1.22079 1.02140 0.97701 0.98497 1.22871 0.93126 1.03440 0.95590 1.21192 1.01201 0.90070 0.99414 1.19082 0.93315 0.95652 1.02475 0.88529 0.87718 0.90452 0.80177 0.71450 0.84852 0.93764 0.91569 0.91979 0.89940 0.92153 0.89013 0.92497 0.95438 0.90085 0.91723 0.80007 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.58 71.24 0.68 -1.11 16 2 C -0.01 -0.19 5.92 -19.65 -0.12 -0.31 16 3 C -0.18 -3.45 9.64 22.27 0.21 -3.24 16 4 C 0.34 8.44 7.72 85.19 0.66 9.10 16 5 O -0.49 -9.43 13.55 -88.76 -1.20 -10.63 16 6 N -0.53 -17.17 10.36 -302.21 -3.13 -20.30 16 7 C 0.13 4.34 6.60 40.21 0.27 4.60 16 8 C -0.05 -1.96 9.55 22.85 0.22 -1.74 16 9 C -0.11 -4.48 5.57 -20.12 -0.11 -4.59 16 10 C 0.55 24.35 7.45 86.80 0.65 24.99 16 11 O -0.59 -28.32 16.03 -3.87 -0.06 -28.38 16 12 N -0.58 -24.15 2.44 -805.49 -1.97 -26.12 16 13 C 0.18 7.76 3.44 85.63 0.29 8.05 16 14 C -0.53 -26.22 6.13 25.60 0.16 -26.07 16 15 H 0.05 2.63 7.02 -2.91 -0.02 2.61 16 16 C 0.04 1.89 5.34 84.66 0.45 2.34 16 17 N -0.93 -50.66 13.96 21.45 0.30 -50.36 16 18 Si 0.91 36.28 27.35 68.60 1.88 38.16 16 19 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.25 -9.16 6.54 99.48 0.65 -8.51 16 22 C 0.13 4.77 3.24 44.99 0.15 4.92 16 23 C -0.15 -4.44 9.06 71.98 0.65 -3.78 16 24 C -0.15 -5.45 8.14 71.98 0.59 -4.87 16 25 C -0.13 -5.16 7.37 22.28 0.16 -4.99 16 26 C -0.10 -3.24 9.28 22.27 0.21 -3.03 16 27 C -0.10 -3.12 5.75 -21.22 -0.12 -3.24 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 0.95 8.10 -2.38 -0.02 0.93 16 30 H 0.08 1.23 6.49 -2.39 -0.02 1.22 16 31 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.42 3.65 9.06 -74.06 -0.67 2.98 16 33 H 0.13 5.15 7.89 -2.91 -0.02 5.13 16 34 H 0.04 1.80 5.38 -2.39 -0.01 1.79 16 35 H 0.07 2.73 3.48 -2.52 -0.01 2.72 16 36 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 37 H 0.08 3.13 6.94 -2.39 -0.02 3.11 16 38 H 0.06 1.85 6.64 -2.39 -0.02 1.83 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.03 1.13 8.01 -2.39 -0.02 1.11 16 42 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.06 2.69 6.40 -2.39 -0.02 2.67 16 44 H 0.18 7.85 2.84 -2.91 -0.01 7.84 16 45 H 0.16 4.23 6.40 -2.91 -0.02 4.22 16 Total: -1.00 -68.65 357.80 1.13 -67.51 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.33 Total: 33.09 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.99 Total: -2.96 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -4.80 Total: -96.79 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.26 Total: -39.01 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 1.88 Total: 38.16 kcal Total: -68.65 1.13 -67.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577021308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.399 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds