Wall clock time and date at job start Tue Mar 31 2020 15:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34424 * 124.92556 * 2 1 4 4 C 1.34929 * 110.89061 * 180.02562 * 3 2 1 5 5 C 1.38943 * 133.31792 * 180.02562 * 4 3 2 6 6 C 1.37744 * 120.05172 * 180.02562 * 5 4 3 7 7 C 1.39316 * 120.62355 * 359.97438 * 6 5 4 8 8 N 1.40152 * 119.93373 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00198 * 144.17207 * 8 7 6 10 10 O 1.21593 * 119.99604 * 4.68328 * 9 8 7 11 11 N 1.34767 * 120.00049 * 184.68594 * 9 8 7 12 12 C 1.46510 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46994 * 184.82552 * 12 11 9 14 14 C 1.50701 * 115.55317 * 55.76729 * 13 12 11 15 15 H 1.07996 * 119.99558 * 264.68306 * 14 13 12 16 16 C 1.37879 * 119.99666 * 84.68127 * 14 13 12 17 17 N 1.31512 * 120.00274 * 1.93608 * 16 14 13 18 18 Si 1.86801 * 119.99375 * 181.93889 * 16 14 13 19 19 H 1.48494 * 109.47439 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46987 * 120.00154 * 18 16 14 21 21 H 1.48503 * 109.46914 * 240.00026 * 18 16 14 22 22 C 1.53005 * 117.49825 * 270.09615 * 13 12 11 23 23 C 1.53004 * 117.49499 * 201.43889 * 13 12 11 24 24 C 1.38301 * 120.12697 * 0.23207 * 7 6 5 25 25 C 1.39407 * 119.54596 * 359.55485 * 24 7 6 26 26 C 1.33996 * 124.91462 * 180.02562 * 2 1 3 27 27 C 1.50700 * 126.90869 * 359.96427 * 26 2 1 28 28 H 1.09004 * 109.47072 * 269.95997 * 1 2 3 29 29 H 1.09009 * 109.46846 * 29.95419 * 1 2 3 30 30 H 1.08998 * 109.47868 * 149.95398 * 1 2 3 31 31 H 1.07995 * 119.97248 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.68165 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99926 * 324.15975 * 8 7 6 34 34 H 0.97001 * 120.00196 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.46975 * 304.82712 * 12 11 9 36 36 H 1.09003 * 109.46536 * 64.82608 * 12 11 9 37 37 H 0.96996 * 119.99768 * 185.01061 * 17 16 14 38 38 H 1.09001 * 117.49645 * 359.97438 * 22 13 12 39 39 H 1.09000 * 117.49982 * 145.02611 * 22 13 12 40 40 H 1.09003 * 117.49368 * 214.97883 * 23 13 12 41 41 H 1.08994 * 117.49902 * 359.97438 * 23 13 12 42 42 H 1.08009 * 120.23090 * 179.70548 * 24 7 6 43 43 H 1.08997 * 109.47478 * 270.00094 * 27 26 2 44 44 H 1.09003 * 109.47138 * 30.00001 * 27 26 2 45 45 H 1.08999 * 109.47628 * 150.00067 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1021 0.0000 4 6 3.5856 0.7749 -0.0006 5 6 4.7555 1.5245 -0.0003 6 6 5.9795 0.8927 -0.0016 7 6 6.0603 -0.4981 -0.0026 8 7 7.3133 -1.1259 -0.0034 9 6 7.4921 -2.2744 0.6790 10 8 6.5471 -2.8108 1.2245 11 7 8.7183 -2.8281 0.7567 12 6 8.9128 -4.0762 1.4990 13 6 10.4028 -4.4220 1.5336 14 6 11.3050 -3.3544 2.0967 15 1 11.8008 -2.6613 1.4333 16 6 11.4975 -3.2625 3.4589 17 7 10.9241 -4.1301 4.2640 18 14 12.5727 -1.9057 4.1607 19 1 13.0976 -1.0673 3.0533 20 1 11.7682 -1.0632 5.0818 21 1 13.7074 -2.5086 4.9052 22 6 10.9541 -5.2857 0.3973 23 6 10.7835 -5.8802 1.7975 24 6 4.9063 -1.2605 -0.0072 25 6 3.6642 -0.6275 -0.0013 26 6 2.2739 -1.0988 -0.0005 27 6 1.8038 -2.5306 -0.0004 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8905 -0.5132 30 1 -0.3635 -0.8895 -0.5145 31 1 4.7051 2.6032 0.0008 32 1 6.8851 1.4811 -0.0019 33 1 8.0518 -0.7340 -0.4952 34 1 9.4722 -2.4003 0.3212 35 1 8.5443 -3.9543 2.5175 36 1 8.3645 -4.8801 1.0078 37 1 10.9996 -4.0231 5.2251 38 1 10.2552 -5.6079 -0.3746 39 1 11.9695 -5.0820 0.0574 40 1 11.6868 -6.0673 2.3783 41 1 9.9726 -6.5930 1.9470 42 1 4.9670 -2.3388 -0.0127 43 1 1.6910 -2.8759 1.0273 44 1 0.8446 -2.5981 -0.5137 45 1 2.5357 -3.1534 -0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581048860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:14 Heat of formation + Delta-G solvation = 19.003450 kcal Electronic energy + Delta-G solvation = -27042.952794 eV Core-core repulsion = 23220.516552 eV Total energy + Delta-G solvation = -3822.436242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44515 -40.04633 -37.82003 -36.66986 -34.47367 -34.10202 -33.35874 -32.00051 -31.20563 -29.62799 -28.37733 -26.30450 -26.10202 -25.16864 -22.92210 -21.76385 -21.20605 -20.39962 -19.99490 -19.45233 -18.00174 -17.67094 -16.78771 -16.33290 -16.09170 -15.68197 -15.04707 -14.76463 -14.58352 -14.24098 -14.12069 -13.73186 -13.62921 -13.41451 -13.33139 -13.12735 -12.98652 -12.73771 -12.61150 -12.33625 -12.26452 -11.92619 -11.84404 -11.60619 -11.02778 -11.00093 -10.95013 -10.55620 -10.27459 -10.00405 -9.81799 -9.65588 -9.47384 -9.08863 -8.52605 -8.40380 -8.13551 -8.04838 -7.70140 -6.11358 -4.20748 0.93107 1.37249 2.27742 2.67509 3.01061 3.22829 3.32067 3.32873 3.50503 3.88965 4.30693 4.32976 4.65392 4.69543 4.82269 4.93463 5.05231 5.14866 5.17968 5.19339 5.30404 5.36870 5.48476 5.51248 5.60056 5.64668 5.78042 5.92267 5.99148 6.09112 6.28678 6.29619 6.34241 6.42382 6.45745 6.49743 6.52537 6.67351 6.79381 6.93984 7.07965 7.20591 7.24618 7.34289 7.37495 7.53505 7.77360 8.29539 8.49207 8.80703 9.02824 9.46995 10.96782 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.002651 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.871854 B =10559.335561 C =11277.743857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 O -0.196 6.196 4 C 0.031 3.969 5 C -0.091 4.091 6 C -0.118 4.118 7 C 0.159 3.841 8 N -0.692 5.692 9 C 0.696 3.304 10 O -0.586 6.586 11 N -0.710 5.710 12 C 0.181 3.819 13 C 0.024 3.976 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.074 3.926 17 N -0.873 5.873 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.212 4.212 23 C -0.143 4.143 24 C -0.073 4.073 25 C -0.106 4.106 26 C -0.174 4.174 27 C -0.081 4.081 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.406 0.594 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.146 0.854 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 8.361 -10.869 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.027 4.027 3 O -0.098 6.098 4 C -0.016 4.016 5 C -0.110 4.110 6 C -0.139 4.139 7 C 0.063 3.937 8 N -0.340 5.340 9 C 0.397 3.603 10 O -0.465 6.465 11 N -0.361 5.361 12 C 0.058 3.942 13 C 0.023 3.977 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.509 5.509 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.249 4.249 23 C -0.181 4.181 24 C -0.094 4.094 25 C -0.107 4.107 26 C -0.175 4.175 27 C -0.137 4.137 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.241 0.759 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.164 0.836 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.441 7.948 -10.119 20.877 hybrid contribution 1.506 1.051 0.248 1.853 sum -14.935 9.000 -9.871 20.037 Atomic orbital electron populations 1.20384 0.85055 1.04077 1.03704 1.21994 0.93684 0.83501 1.03504 1.83910 1.15043 1.33646 1.77250 1.19496 0.83050 0.93459 1.05615 1.19556 0.87447 0.99357 1.04654 1.20655 0.97253 0.92604 1.03352 1.17222 0.84662 0.90650 1.01156 1.42640 1.11359 1.25889 1.54096 1.16031 0.84585 0.80231 0.79495 1.90882 1.40435 1.63407 1.51729 1.45114 1.07128 1.27587 1.56315 1.20869 0.96554 0.81721 0.95090 1.19051 0.90695 0.91431 0.96504 1.20349 1.27360 1.14444 0.91483 0.92202 1.24982 0.95426 0.95390 0.97226 1.69991 1.43570 1.33976 1.03357 0.86599 0.80439 0.82087 0.79237 1.19739 1.20965 1.20999 1.23061 1.00927 1.09151 0.91755 1.22471 1.02001 0.97278 0.96389 1.20643 0.88498 1.01377 0.98871 1.19638 0.93456 0.92621 1.05014 1.20839 0.90742 0.96293 1.09668 1.20164 1.00828 0.90326 1.02400 0.89831 0.90445 0.89176 0.84923 0.84452 0.75886 0.76704 0.91152 0.94631 0.92888 0.91652 0.90392 0.89570 0.91720 0.83601 0.91127 0.91605 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.18 36.01 0.37 -0.16 16 2 C 0.02 0.24 7.23 -35.80 -0.26 -0.02 16 3 O -0.20 -2.67 10.59 3.63 0.04 -2.63 16 4 C 0.03 0.45 7.41 -38.48 -0.29 0.16 16 5 C -0.09 -1.12 10.05 -39.50 -0.40 -1.51 16 6 C -0.12 -1.45 9.93 -39.36 -0.39 -1.84 16 7 C 0.16 2.38 6.29 -83.63 -0.53 1.85 16 8 N -0.69 -10.19 5.35 -14.20 -0.08 -10.26 16 9 C 0.70 13.18 8.40 -86.93 -0.73 12.45 16 10 O -0.59 -13.15 13.83 5.28 0.07 -13.08 16 11 N -0.71 -13.49 5.37 -65.22 -0.35 -13.84 16 12 C 0.18 4.01 5.56 -4.04 -0.02 3.99 16 13 C 0.02 0.55 1.54 -155.66 -0.24 0.31 16 14 C -0.50 -12.52 8.27 -34.44 -0.28 -12.80 16 15 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 16 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 17 N -0.87 -24.06 12.72 55.43 0.71 -23.35 16 18 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.21 -4.29 9.93 -26.69 -0.27 -4.56 16 23 C -0.14 -3.22 9.26 -26.69 -0.25 -3.47 16 24 C -0.07 -1.19 8.73 -39.12 -0.34 -1.53 16 25 C -0.11 -1.62 6.38 -105.16 -0.67 -2.29 16 26 C -0.17 -2.28 6.35 -102.65 -0.65 -2.93 16 27 C -0.08 -0.84 10.18 36.01 0.37 -0.48 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.09 0.47 7.06 -51.93 -0.37 0.11 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.41 4.54 8.84 -40.82 -0.36 4.18 16 34 H 0.40 6.80 8.18 -40.82 -0.33 6.47 16 35 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.15 2.63 6.29 -52.48 -0.33 2.30 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.50 7.08 -51.93 -0.37 0.14 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -31.60 380.92 -9.94 -41.55 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.38 Total: 11.52 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -4.67 Total: -11.00 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.28 Total: -47.45 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.11 Total: -15.71 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.60 -9.94 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581048860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.549 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds