Wall clock time and date at job start Tue Mar 31 2020 15:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34424 * 124.92556 * 2 1 4 4 C 1.34929 * 110.89061 * 180.02562 * 3 2 1 5 5 C 1.38943 * 133.31792 * 180.02562 * 4 3 2 6 6 C 1.37744 * 120.05172 * 180.02562 * 5 4 3 7 7 C 1.39316 * 120.62355 * 359.97438 * 6 5 4 8 8 N 1.40152 * 119.93373 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00198 * 144.17207 * 8 7 6 10 10 O 1.21593 * 119.99604 * 4.68328 * 9 8 7 11 11 N 1.34767 * 120.00049 * 184.68594 * 9 8 7 12 12 C 1.46510 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46994 * 184.82552 * 12 11 9 14 14 C 1.50701 * 115.55317 * 55.76729 * 13 12 11 15 15 H 1.07996 * 119.99558 * 264.68306 * 14 13 12 16 16 C 1.37879 * 119.99666 * 84.68127 * 14 13 12 17 17 N 1.31512 * 120.00274 * 1.93608 * 16 14 13 18 18 Si 1.86801 * 119.99375 * 181.93889 * 16 14 13 19 19 H 1.48494 * 109.47439 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46987 * 120.00154 * 18 16 14 21 21 H 1.48503 * 109.46914 * 240.00026 * 18 16 14 22 22 C 1.53005 * 117.49825 * 270.09615 * 13 12 11 23 23 C 1.53004 * 117.49499 * 201.43889 * 13 12 11 24 24 C 1.38301 * 120.12697 * 0.23207 * 7 6 5 25 25 C 1.39407 * 119.54596 * 359.55485 * 24 7 6 26 26 C 1.33996 * 124.91462 * 180.02562 * 2 1 3 27 27 C 1.50700 * 126.90869 * 359.96427 * 26 2 1 28 28 H 1.09004 * 109.47072 * 269.95997 * 1 2 3 29 29 H 1.09009 * 109.46846 * 29.95419 * 1 2 3 30 30 H 1.08998 * 109.47868 * 149.95398 * 1 2 3 31 31 H 1.07995 * 119.97248 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.68165 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99926 * 324.15975 * 8 7 6 34 34 H 0.97001 * 120.00196 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.46975 * 304.82712 * 12 11 9 36 36 H 1.09003 * 109.46536 * 64.82608 * 12 11 9 37 37 H 0.96996 * 119.99768 * 185.01061 * 17 16 14 38 38 H 1.09001 * 117.49645 * 359.97438 * 22 13 12 39 39 H 1.09000 * 117.49982 * 145.02611 * 22 13 12 40 40 H 1.09003 * 117.49368 * 214.97883 * 23 13 12 41 41 H 1.08994 * 117.49902 * 359.97438 * 23 13 12 42 42 H 1.08009 * 120.23090 * 179.70548 * 24 7 6 43 43 H 1.08997 * 109.47478 * 270.00094 * 27 26 2 44 44 H 1.09003 * 109.47138 * 30.00001 * 27 26 2 45 45 H 1.08999 * 109.47628 * 150.00067 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1021 0.0000 4 6 3.5856 0.7749 -0.0006 5 6 4.7555 1.5245 -0.0003 6 6 5.9795 0.8927 -0.0016 7 6 6.0603 -0.4981 -0.0026 8 7 7.3133 -1.1259 -0.0034 9 6 7.4921 -2.2744 0.6790 10 8 6.5471 -2.8108 1.2245 11 7 8.7183 -2.8281 0.7567 12 6 8.9128 -4.0762 1.4990 13 6 10.4028 -4.4220 1.5336 14 6 11.3050 -3.3544 2.0967 15 1 11.8008 -2.6613 1.4333 16 6 11.4975 -3.2625 3.4589 17 7 10.9241 -4.1301 4.2640 18 14 12.5727 -1.9057 4.1607 19 1 13.0976 -1.0673 3.0533 20 1 11.7682 -1.0632 5.0818 21 1 13.7074 -2.5086 4.9052 22 6 10.9541 -5.2857 0.3973 23 6 10.7835 -5.8802 1.7975 24 6 4.9063 -1.2605 -0.0072 25 6 3.6642 -0.6275 -0.0013 26 6 2.2739 -1.0988 -0.0005 27 6 1.8038 -2.5306 -0.0004 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8905 -0.5132 30 1 -0.3635 -0.8895 -0.5145 31 1 4.7051 2.6032 0.0008 32 1 6.8851 1.4811 -0.0019 33 1 8.0518 -0.7340 -0.4952 34 1 9.4722 -2.4003 0.3212 35 1 8.5443 -3.9543 2.5175 36 1 8.3645 -4.8801 1.0078 37 1 10.9996 -4.0231 5.2251 38 1 10.2552 -5.6079 -0.3746 39 1 11.9695 -5.0820 0.0574 40 1 11.6868 -6.0673 2.3783 41 1 9.9726 -6.5930 1.9470 42 1 4.9670 -2.3388 -0.0127 43 1 1.6910 -2.8759 1.0273 44 1 0.8446 -2.5981 -0.5137 45 1 2.5357 -3.1534 -0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581048860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:13 Heat of formation + Delta-G solvation = 0.580934 kcal Electronic energy + Delta-G solvation = -27043.751654 eV Core-core repulsion = 23220.516552 eV Total energy + Delta-G solvation = -3823.235102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.44156 -41.45958 -39.14984 -38.29740 -35.52576 -35.29837 -34.94960 -33.96163 -32.07453 -30.69382 -29.37441 -27.94666 -27.17073 -26.91253 -24.08223 -22.94646 -22.76497 -21.84513 -21.27010 -20.97624 -19.40399 -18.94357 -17.99637 -17.73521 -17.31420 -16.84050 -16.65682 -16.45427 -16.05097 -15.66933 -15.41088 -15.02903 -14.83466 -14.48168 -14.41735 -14.17745 -13.94995 -13.91398 -13.77502 -13.57920 -13.45564 -13.20690 -12.95810 -12.89315 -12.87229 -12.81182 -12.33446 -12.03724 -12.00182 -11.47678 -11.31287 -11.02680 -10.96276 -10.76423 -10.42618 -10.12758 -9.84374 -9.04646 -8.87735 -8.10180 -6.23298 -0.07242 0.24737 1.32004 1.40714 1.44505 1.53070 1.60466 1.78522 2.08750 2.42350 2.72783 3.17097 3.22184 3.46419 3.59847 3.67391 3.92111 4.12667 4.21793 4.25000 4.26819 4.45842 4.54760 4.57126 4.64223 4.67775 4.68980 4.71734 4.79485 4.86440 4.93562 5.00696 5.01684 5.03243 5.15421 5.26844 5.29038 5.29893 5.32383 5.53490 5.59473 5.62069 5.70155 5.77800 5.80328 6.06320 6.20379 6.36560 6.84804 7.10639 7.46696 7.55152 8.97795 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.002651 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.871854 B =10559.335561 C =11277.743857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.029 3.971 3 O -0.202 6.202 4 C 0.013 3.987 5 C -0.082 4.082 6 C -0.111 4.111 7 C 0.142 3.858 8 N -0.672 5.672 9 C 0.695 3.305 10 O -0.626 6.626 11 N -0.704 5.704 12 C 0.198 3.802 13 C 0.002 3.998 14 C -0.498 4.498 15 H 0.067 0.933 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.947 3.053 19 H -0.258 1.258 20 H -0.290 1.290 21 H -0.287 1.287 22 C -0.176 4.176 23 C -0.156 4.156 24 C -0.100 4.100 25 C -0.130 4.130 26 C -0.207 4.207 27 C -0.077 4.077 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.425 0.575 34 H 0.410 0.590 35 H 0.025 0.975 36 H 0.039 0.961 37 H 0.257 0.743 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.101 10.714 -12.510 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.018 4.018 3 O -0.104 6.104 4 C -0.034 4.034 5 C -0.100 4.100 6 C -0.131 4.131 7 C 0.047 3.953 8 N -0.321 5.321 9 C 0.395 3.605 10 O -0.507 6.507 11 N -0.356 5.356 12 C 0.073 3.927 13 C 0.002 3.998 14 C -0.536 4.536 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.546 5.546 18 Si 0.774 3.226 19 H -0.181 1.181 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.213 4.213 23 C -0.194 4.194 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.208 4.208 27 C -0.133 4.133 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.185 0.815 32 H 0.191 0.809 33 H 0.264 0.736 34 H 0.246 0.754 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.894 10.349 -11.816 23.068 hybrid contribution 1.556 0.341 0.715 1.747 sum -15.338 10.690 -11.100 21.743 Atomic orbital electron populations 1.20644 0.81474 1.05863 1.05137 1.22854 0.95481 0.82495 1.01013 1.83920 1.14865 1.34476 1.77175 1.19891 0.84015 0.93325 1.06179 1.20021 0.86518 1.00988 1.02499 1.20979 0.98780 0.91313 1.02034 1.17490 0.83961 0.91893 1.01953 1.42336 1.12158 1.24432 1.53220 1.16157 0.83854 0.81004 0.79467 1.90867 1.41622 1.64777 1.53427 1.44856 1.07690 1.26958 1.56133 1.20443 0.95996 0.83137 0.93082 1.19085 0.90714 0.91260 0.98789 1.20682 1.26796 1.14574 0.91518 0.91517 1.25705 0.96740 0.97367 0.97930 1.70123 1.45524 1.35746 1.03219 0.85675 0.78593 0.79729 0.78643 1.18121 1.21693 1.21337 1.23050 1.01625 1.05780 0.90884 1.22396 1.01345 0.97394 0.98314 1.20517 0.89985 1.00239 1.01356 1.19975 0.94118 0.93752 1.05307 1.21218 0.90200 0.97919 1.11474 1.20184 1.01885 0.88810 1.02457 0.88366 0.88902 0.87116 0.81474 0.80924 0.73632 0.75353 0.95613 0.94266 0.93399 0.89177 0.89575 0.91801 0.91211 0.86485 0.91427 0.88436 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.18 71.24 0.73 -0.12 16 2 C 0.03 0.64 7.23 24.72 0.18 0.82 16 3 O -0.20 -5.24 10.59 -9.91 -0.10 -5.35 16 4 C 0.01 0.37 7.41 22.98 0.17 0.54 16 5 C -0.08 -1.82 10.05 22.32 0.22 -1.59 16 6 C -0.11 -2.49 9.93 22.41 0.22 -2.27 16 7 C 0.14 4.22 6.29 38.08 0.24 4.46 16 8 N -0.67 -19.42 5.35 -317.10 -1.70 -21.12 16 9 C 0.69 26.71 8.40 179.06 1.50 28.22 16 10 O -0.63 -29.42 13.83 -4.01 -0.06 -29.48 16 11 N -0.70 -26.71 5.37 -478.52 -2.57 -29.28 16 12 C 0.20 8.94 5.56 86.38 0.48 9.43 16 13 C 0.00 0.11 1.54 -52.92 -0.08 0.02 16 14 C -0.50 -24.74 8.27 25.60 0.21 -24.53 16 15 H 0.07 3.16 7.81 -2.91 -0.02 3.14 16 16 C 0.02 1.21 5.43 84.66 0.46 1.67 16 17 N -0.91 -51.37 12.72 21.45 0.27 -51.09 16 18 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.18 -6.83 9.93 30.62 0.30 -6.52 16 23 C -0.16 -7.05 9.26 30.62 0.28 -6.77 16 24 C -0.10 -3.42 8.73 22.57 0.20 -3.23 16 25 C -0.13 -4.10 6.38 -20.21 -0.13 -4.22 16 26 C -0.21 -5.47 6.35 -18.59 -0.12 -5.58 16 27 C -0.08 -1.63 10.18 71.24 0.73 -0.90 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.11 0.80 7.06 -2.39 -0.02 0.79 16 31 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.42 8.74 8.84 -92.71 -0.82 7.92 16 34 H 0.41 13.51 8.18 -92.71 -0.76 12.75 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.71 8.10 -2.39 -0.02 1.70 16 37 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 38 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.12 4.61 6.29 -2.91 -0.02 4.59 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.10 1.36 7.08 -2.39 -0.02 1.34 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -71.63 380.92 2.93 -68.70 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.54 Total: 34.33 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 5.60 Total: -10.59 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.99 Total: -101.49 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.16 Total: -34.83 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -71.63 2.93 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581048860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.280 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds