Wall clock time and date at job start Tue Mar 31 2020 15:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34220 * 125.44172 * 2 1 4 4 C 1.33652 * 110.91136 * 179.75955 * 3 2 1 5 5 C 1.50697 * 125.80068 * 180.26220 * 4 3 2 6 6 C 1.36420 * 108.39377 * 0.38652 * 4 3 2 7 7 C 1.47381 * 127.18709 * 179.89361 * 6 4 3 8 8 O 1.21609 * 119.99767 * 269.68104 * 7 6 4 9 9 N 1.34774 * 119.99590 * 89.68317 * 7 6 4 10 10 C 1.46496 * 120.00232 * 359.97438 * 9 7 6 11 11 C 1.50693 * 109.47193 * 269.99704 * 10 9 7 12 12 H 1.08002 * 120.00419 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00395 * 179.97438 * 11 10 9 14 14 N 1.31504 * 120.00448 * 179.97438 * 13 11 10 15 15 Si 1.86810 * 119.99714 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47122 * 89.99887 * 15 13 11 17 17 H 1.48499 * 109.46982 * 209.99849 * 15 13 11 18 18 H 1.48497 * 109.46785 * 329.99673 * 15 13 11 19 19 C 1.46504 * 119.99509 * 179.97438 * 9 7 6 20 20 C 1.50707 * 109.46520 * 90.00714 * 19 9 7 21 21 C 1.38227 * 119.62024 * 94.97709 * 20 19 9 22 22 C 1.38627 * 119.15702 * 179.78495 * 21 20 19 23 23 C 1.38669 * 118.42389 * 0.47826 * 22 21 20 24 24 C 1.38186 * 119.16143 * 359.49762 * 23 22 21 25 25 N 1.31856 * 119.61172 * 274.99461 * 20 19 9 26 26 C 1.34173 * 125.43853 * 179.97438 * 2 1 3 27 27 C 1.50705 * 127.02061 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47231 * 270.00994 * 1 2 3 29 29 H 1.09004 * 109.46740 * 30.00563 * 1 2 3 30 30 H 1.08998 * 109.46866 * 150.00085 * 1 2 3 31 31 H 1.08997 * 109.47609 * 270.14352 * 5 4 3 32 32 H 1.09002 * 109.46954 * 30.14476 * 5 4 3 33 33 H 1.09004 * 109.46646 * 150.14099 * 5 4 3 34 34 H 1.09003 * 109.47401 * 30.00062 * 10 9 7 35 35 H 1.09003 * 109.47285 * 149.99777 * 10 9 7 36 36 H 0.97004 * 120.00262 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.47601 * 330.00291 * 19 9 7 38 38 H 1.08997 * 109.47191 * 209.99824 * 19 9 7 39 39 H 1.07998 * 120.41916 * 359.97438 * 21 20 19 40 40 H 1.08008 * 120.78688 * 180.22921 * 22 21 20 41 41 H 1.08002 * 120.42244 * 179.78279 * 23 22 21 42 42 H 1.07996 * 119.61757 * 180.25243 * 24 23 22 43 43 H 1.08998 * 109.47230 * 269.96997 * 27 26 2 44 44 H 1.08993 * 109.47293 * 29.97469 * 27 26 2 45 45 H 1.09008 * 109.46917 * 149.97567 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2853 1.0935 0.0000 4 6 3.5791 0.7582 0.0052 5 6 4.7390 1.7202 0.0125 6 6 3.6710 -0.6029 0.0001 7 6 4.9025 -1.4126 0.0009 8 8 5.4108 -1.7473 -1.0519 9 7 5.4653 -1.7819 1.1685 10 6 4.8532 -1.3782 2.4368 11 6 5.4243 -0.0530 2.8708 12 1 6.1685 0.4396 2.2625 13 6 4.9961 0.5314 4.0439 14 7 5.4949 1.6876 4.4229 15 14 3.7084 -0.3202 5.0958 16 1 4.3800 -1.2113 6.0756 17 1 2.9086 0.6993 5.8210 18 1 2.8131 -1.1254 4.2268 19 6 6.6891 -2.5872 1.1693 20 6 7.8897 -1.6763 1.1688 21 6 8.4968 -1.3455 2.3658 22 6 9.6032 -0.5104 2.3538 23 6 10.0537 -0.0291 1.1338 24 6 9.3958 -0.4035 -0.0222 25 7 8.3486 -1.2038 0.0266 26 6 2.2850 -1.0932 0.0005 27 6 1.8308 -2.5301 0.0006 28 1 -0.3633 0.0002 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 5.0218 1.9562 -1.0134 32 1 4.4490 2.6351 0.5291 33 1 5.5853 1.2650 0.5271 34 1 3.7751 -1.2841 2.3063 35 1 5.0627 -2.1307 3.1971 36 1 5.1934 2.0989 5.2481 37 1 6.7104 -3.2169 0.2799 38 1 6.7101 -3.2154 2.0598 39 1 8.1158 -1.7352 3.2982 40 1 10.1002 -0.2380 3.2732 41 1 10.9107 0.6265 1.0873 42 1 9.7428 -0.0363 -0.9767 43 1 1.7214 -2.8766 1.0283 44 1 0.8727 -2.6084 -0.5131 45 1 2.5699 -3.1448 -0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585698442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:33 Heat of formation + Delta-G solvation = 13.621653 kcal Electronic energy + Delta-G solvation = -29286.562439 eV Core-core repulsion = 25463.892825 eV Total energy + Delta-G solvation = -3822.669614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02150 -39.79861 -38.53804 -35.09311 -33.85324 -32.84742 -32.35509 -31.90119 -31.14151 -29.35317 -28.15533 -27.79905 -26.21503 -24.05409 -23.03773 -22.84228 -22.06968 -21.08071 -19.15775 -17.93241 -17.09193 -16.57462 -16.29143 -16.00530 -15.64068 -15.44460 -15.09984 -14.96857 -14.26855 -13.91080 -13.49454 -13.43262 -13.16132 -13.04352 -12.83883 -12.78207 -12.71479 -12.50885 -12.24739 -12.18906 -12.06786 -12.01539 -11.91393 -11.75361 -11.58202 -11.29947 -10.97134 -10.74492 -10.62612 -10.26987 -9.60169 -9.38387 -9.24326 -8.92017 -8.77815 -8.66803 -8.47030 -7.75309 -7.70150 -6.18832 -4.17677 1.57644 1.83371 2.22152 2.77384 3.16561 3.26049 3.27911 3.28293 3.34098 3.90333 4.28947 4.47743 4.78154 4.96433 5.12669 5.18820 5.24936 5.27482 5.30605 5.42279 5.49639 5.54829 5.57273 5.67419 5.81792 5.85062 5.91232 5.91757 5.97813 6.04287 6.10893 6.17636 6.24072 6.26082 6.31066 6.42973 6.54111 6.61834 6.69175 6.73741 6.82068 6.93550 7.19123 7.36653 7.48038 7.68543 8.13103 8.42636 8.56331 8.85400 8.98902 9.41999 10.93164 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.006016 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.111300 B = 4653.502087 C = 5851.937301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.030 4.030 3 O -0.177 6.177 4 C 0.067 3.933 5 C -0.071 4.071 6 C -0.208 4.208 7 C 0.598 3.402 8 O -0.541 6.541 9 N -0.581 5.581 10 C 0.208 3.792 11 C -0.525 4.525 12 H 0.080 0.920 13 C 0.080 3.920 14 N -0.890 5.890 15 Si 0.862 3.138 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.264 1.264 19 C 0.171 3.829 20 C 0.120 3.880 21 C -0.127 4.127 22 C -0.078 4.078 23 C -0.178 4.178 24 C 0.086 3.914 25 N -0.461 5.461 26 C -0.150 4.150 27 C -0.079 4.079 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.264 0.736 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -4.921 -4.519 6.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 O -0.075 6.075 4 C 0.016 3.984 5 C -0.128 4.128 6 C -0.212 4.212 7 C 0.386 3.614 8 O -0.419 6.419 9 N -0.312 5.312 10 C 0.087 3.913 11 C -0.563 4.563 12 H 0.098 0.902 13 C -0.123 4.123 14 N -0.528 5.528 15 Si 0.689 3.311 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.189 1.189 19 C 0.047 3.953 20 C -0.019 4.019 21 C -0.147 4.147 22 C -0.105 4.105 23 C -0.198 4.198 24 C -0.071 4.071 25 N -0.171 5.171 26 C -0.152 4.152 27 C -0.136 4.136 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.163 0.837 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.822 -4.931 -5.686 7.743 hybrid contribution -0.127 0.168 1.875 1.887 sum -1.949 -4.763 -3.811 6.404 Atomic orbital electron populations 1.20207 0.85532 1.03373 1.03110 1.21730 0.93415 0.83677 1.09030 1.83607 1.16376 1.34974 1.72516 1.22356 0.82473 0.93545 1.00070 1.20424 0.92597 0.97511 1.02218 1.20743 0.93401 0.93149 1.13890 1.17231 0.82422 0.78472 0.83301 1.90742 1.64169 1.55729 1.31291 1.47841 1.24107 1.51911 1.07338 1.19853 0.94472 0.96421 0.80545 1.21294 1.24529 1.03196 1.07305 0.90208 1.24778 0.95757 0.94631 0.97160 1.69872 1.42963 1.16549 1.23429 0.87054 0.82821 0.79947 0.81256 1.20100 1.21087 1.18888 1.20129 0.80906 0.91133 1.03129 1.21539 0.95396 0.96540 0.88426 1.21919 0.95294 0.98252 0.99253 1.21472 0.95802 0.95258 0.97927 1.22026 1.01938 1.01901 0.93964 1.22612 0.91898 0.94693 0.97942 1.67545 1.10872 1.09126 1.29516 1.20928 0.90632 0.95930 1.07693 1.20139 1.00743 0.90821 1.01894 0.90487 0.90943 0.89807 0.90963 0.90314 0.87983 0.94400 0.95608 0.92615 0.89141 0.89465 0.84849 0.85438 0.85675 0.83657 0.91480 0.91763 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.21 36.01 0.37 -0.42 16 2 C -0.03 -0.52 7.28 -35.74 -0.26 -0.78 16 3 O -0.18 -3.49 10.52 7.64 0.08 -3.41 16 4 C 0.07 1.40 7.37 -34.97 -0.26 1.15 16 5 C -0.07 -1.41 10.24 36.00 0.37 -1.04 16 6 C -0.21 -4.43 4.26 -103.27 -0.44 -4.87 16 7 C 0.60 13.29 7.11 -12.54 -0.09 13.20 16 8 O -0.54 -13.09 16.69 5.27 0.09 -13.00 16 9 N -0.58 -12.18 2.44 -177.73 -0.43 -12.61 16 10 C 0.21 4.61 4.09 -5.20 -0.02 4.59 16 11 C -0.52 -13.15 9.42 -34.44 -0.32 -13.47 16 12 H 0.08 2.23 6.76 -52.49 -0.35 1.88 16 13 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.89 -24.93 13.96 55.43 0.77 -24.15 16 15 Si 0.86 19.84 27.47 -169.99 -4.67 15.17 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 19 C 0.17 3.16 5.76 -5.19 -0.03 3.13 16 20 C 0.12 2.29 6.36 -82.58 -0.53 1.76 16 21 C -0.13 -2.25 9.57 -39.44 -0.38 -2.63 16 22 C -0.08 -1.26 10.18 -39.28 -0.40 -1.66 16 23 C -0.18 -2.69 10.11 -39.44 -0.40 -3.09 16 24 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 25 N -0.46 -9.06 10.27 -9.47 -0.10 -9.16 16 26 C -0.15 -2.78 6.14 -102.49 -0.63 -3.40 16 27 C -0.08 -1.18 10.15 36.01 0.37 -0.81 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.81 7.14 -51.93 -0.37 0.44 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.10 2.31 6.20 -51.93 -0.32 1.99 16 34 H 0.04 0.89 5.75 -51.93 -0.30 0.59 16 35 H 0.03 0.54 7.32 -51.93 -0.38 0.16 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.09 1.68 7.42 -51.93 -0.39 1.29 16 38 H 0.09 1.35 7.79 -51.93 -0.40 0.95 16 39 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 41 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.76 7.15 -51.93 -0.37 0.39 16 45 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -32.37 381.91 -7.73 -40.10 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.28 Total: 6.44 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.95 Total: -5.13 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.24 Total: -45.93 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.17 Total: -16.41 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.37 -7.73 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585698442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.725 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds