Wall clock time and date at job start Tue Mar 31 2020 15:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34220 * 125.44172 * 2 1 4 4 C 1.33652 * 110.91136 * 179.75955 * 3 2 1 5 5 C 1.50697 * 125.80068 * 180.26220 * 4 3 2 6 6 C 1.36420 * 108.39377 * 0.38652 * 4 3 2 7 7 C 1.47381 * 127.18709 * 179.89361 * 6 4 3 8 8 O 1.21609 * 119.99767 * 269.68104 * 7 6 4 9 9 N 1.34774 * 119.99590 * 89.68317 * 7 6 4 10 10 C 1.46496 * 120.00232 * 359.97438 * 9 7 6 11 11 C 1.50693 * 109.47193 * 269.99704 * 10 9 7 12 12 H 1.08002 * 120.00419 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00395 * 179.97438 * 11 10 9 14 14 N 1.31504 * 120.00448 * 179.97438 * 13 11 10 15 15 Si 1.86810 * 119.99714 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47122 * 89.99887 * 15 13 11 17 17 H 1.48499 * 109.46982 * 209.99849 * 15 13 11 18 18 H 1.48497 * 109.46785 * 329.99673 * 15 13 11 19 19 C 1.46504 * 119.99509 * 179.97438 * 9 7 6 20 20 C 1.50707 * 109.46520 * 90.00714 * 19 9 7 21 21 C 1.38227 * 119.62024 * 94.97709 * 20 19 9 22 22 C 1.38627 * 119.15702 * 179.78495 * 21 20 19 23 23 C 1.38669 * 118.42389 * 0.47826 * 22 21 20 24 24 C 1.38186 * 119.16143 * 359.49762 * 23 22 21 25 25 N 1.31856 * 119.61172 * 274.99461 * 20 19 9 26 26 C 1.34173 * 125.43853 * 179.97438 * 2 1 3 27 27 C 1.50705 * 127.02061 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47231 * 270.00994 * 1 2 3 29 29 H 1.09004 * 109.46740 * 30.00563 * 1 2 3 30 30 H 1.08998 * 109.46866 * 150.00085 * 1 2 3 31 31 H 1.08997 * 109.47609 * 270.14352 * 5 4 3 32 32 H 1.09002 * 109.46954 * 30.14476 * 5 4 3 33 33 H 1.09004 * 109.46646 * 150.14099 * 5 4 3 34 34 H 1.09003 * 109.47401 * 30.00062 * 10 9 7 35 35 H 1.09003 * 109.47285 * 149.99777 * 10 9 7 36 36 H 0.97004 * 120.00262 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.47601 * 330.00291 * 19 9 7 38 38 H 1.08997 * 109.47191 * 209.99824 * 19 9 7 39 39 H 1.07998 * 120.41916 * 359.97438 * 21 20 19 40 40 H 1.08008 * 120.78688 * 180.22921 * 22 21 20 41 41 H 1.08002 * 120.42244 * 179.78279 * 23 22 21 42 42 H 1.07996 * 119.61757 * 180.25243 * 24 23 22 43 43 H 1.08998 * 109.47230 * 269.96997 * 27 26 2 44 44 H 1.08993 * 109.47293 * 29.97469 * 27 26 2 45 45 H 1.09008 * 109.46917 * 149.97567 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2853 1.0935 0.0000 4 6 3.5791 0.7582 0.0052 5 6 4.7390 1.7202 0.0125 6 6 3.6710 -0.6029 0.0001 7 6 4.9025 -1.4126 0.0009 8 8 5.4108 -1.7473 -1.0519 9 7 5.4653 -1.7819 1.1685 10 6 4.8532 -1.3782 2.4368 11 6 5.4243 -0.0530 2.8708 12 1 6.1685 0.4396 2.2625 13 6 4.9961 0.5314 4.0439 14 7 5.4949 1.6876 4.4229 15 14 3.7084 -0.3202 5.0958 16 1 4.3800 -1.2113 6.0756 17 1 2.9086 0.6993 5.8210 18 1 2.8131 -1.1254 4.2268 19 6 6.6891 -2.5872 1.1693 20 6 7.8897 -1.6763 1.1688 21 6 8.4968 -1.3455 2.3658 22 6 9.6032 -0.5104 2.3538 23 6 10.0537 -0.0291 1.1338 24 6 9.3958 -0.4035 -0.0222 25 7 8.3486 -1.2038 0.0266 26 6 2.2850 -1.0932 0.0005 27 6 1.8308 -2.5301 0.0006 28 1 -0.3633 0.0002 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 5.0218 1.9562 -1.0134 32 1 4.4490 2.6351 0.5291 33 1 5.5853 1.2650 0.5271 34 1 3.7751 -1.2841 2.3063 35 1 5.0627 -2.1307 3.1971 36 1 5.1934 2.0989 5.2481 37 1 6.7104 -3.2169 0.2799 38 1 6.7101 -3.2154 2.0598 39 1 8.1158 -1.7352 3.2982 40 1 10.1002 -0.2380 3.2732 41 1 10.9107 0.6265 1.0873 42 1 9.7428 -0.0363 -0.9767 43 1 1.7214 -2.8766 1.0283 44 1 0.8727 -2.6084 -0.5131 45 1 2.5699 -3.1448 -0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585698442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:32 Heat of formation + Delta-G solvation = -5.014136 kcal Electronic energy + Delta-G solvation = -29287.370548 eV Core-core repulsion = 25463.892825 eV Total energy + Delta-G solvation = -3823.477722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.49397 -41.22215 -40.15439 -36.83538 -35.18953 -34.62077 -33.98338 -33.26827 -32.59103 -30.57877 -29.95701 -29.18456 -27.69804 -25.41002 -24.68019 -24.28456 -23.68619 -22.53366 -20.63003 -19.50127 -19.02936 -18.10090 -17.77307 -17.46954 -17.02302 -16.99762 -16.65144 -16.43652 -15.95411 -15.47421 -15.00677 -14.73578 -14.69234 -14.37366 -14.34456 -14.11198 -13.95543 -13.91574 -13.85277 -13.65788 -13.61258 -13.47699 -13.23302 -13.20104 -12.92265 -12.75086 -12.62871 -12.35024 -12.15369 -12.05260 -11.57986 -11.04666 -10.71523 -10.66572 -10.31566 -10.22673 -9.84988 -9.45640 -9.13954 -8.20659 -6.22412 0.24199 0.50735 0.73841 1.31157 1.35565 1.40651 1.46958 1.61278 1.89533 2.34212 2.37221 3.07703 3.13685 3.46284 3.58499 3.72576 3.92699 3.99951 4.07047 4.13597 4.28764 4.34213 4.38241 4.40323 4.49146 4.50866 4.58566 4.66194 4.68505 4.74052 4.81765 4.83039 4.87076 4.90836 4.94432 4.95227 5.03661 5.09024 5.26643 5.31097 5.38068 5.51529 5.63172 5.69384 5.90256 6.20633 6.26079 6.56580 6.80245 7.21392 7.25533 7.41114 8.93923 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.006016 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.111300 B = 4653.502087 C = 5851.937301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.024 4.024 3 O -0.186 6.186 4 C 0.041 3.959 5 C -0.061 4.061 6 C -0.231 4.231 7 C 0.598 3.402 8 O -0.570 6.570 9 N -0.578 5.578 10 C 0.217 3.783 11 C -0.505 4.505 12 H 0.042 0.958 13 C 0.031 3.969 14 N -0.934 5.934 15 Si 0.917 3.083 16 H -0.261 1.261 17 H -0.292 1.292 18 H -0.251 1.251 19 C 0.166 3.834 20 C 0.100 3.900 21 C -0.140 4.140 22 C -0.086 4.086 23 C -0.169 4.169 24 C 0.072 3.928 25 N -0.497 5.497 26 C -0.172 4.172 27 C -0.075 4.075 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -5.854 -3.984 7.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 O -0.084 6.084 4 C -0.011 4.011 5 C -0.118 4.118 6 C -0.235 4.235 7 C 0.386 3.614 8 O -0.451 6.451 9 N -0.308 5.308 10 C 0.096 3.904 11 C -0.543 4.543 12 H 0.061 0.939 13 C -0.168 4.168 14 N -0.574 5.574 15 Si 0.742 3.258 16 H -0.186 1.186 17 H -0.218 1.218 18 H -0.175 1.175 19 C 0.043 3.957 20 C -0.038 4.038 21 C -0.161 4.161 22 C -0.112 4.112 23 C -0.188 4.188 24 C -0.085 4.085 25 N -0.207 5.207 26 C -0.173 4.173 27 C -0.131 4.131 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.169 0.831 41 H 0.180 0.820 42 H 0.186 0.814 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.263 -5.896 -5.146 8.478 hybrid contribution 0.393 0.516 1.628 1.752 sum -2.870 -5.379 -3.518 7.039 Atomic orbital electron populations 1.20502 0.81394 1.05585 1.04626 1.22801 0.95505 0.82575 1.06393 1.83608 1.15953 1.36234 1.72640 1.22422 0.83273 0.93728 1.01645 1.20248 0.91534 0.97107 1.02882 1.21011 0.94574 0.93504 1.14457 1.17445 0.82645 0.78148 0.83182 1.90707 1.65119 1.57086 1.32164 1.47831 1.24702 1.51679 1.06573 1.19681 0.93896 0.95437 0.81397 1.21241 1.22975 1.03863 1.06263 0.93943 1.25443 0.97718 0.95143 0.98497 1.70010 1.44907 1.18343 1.24112 0.86159 0.80617 0.79067 0.79943 1.18627 1.21817 1.17453 1.20352 0.80043 0.91099 1.04224 1.21565 0.95963 0.97422 0.88883 1.22038 0.96161 0.99019 0.98864 1.21861 0.95347 0.94584 0.99439 1.22408 1.02311 1.01187 0.92916 1.23117 0.91367 0.94222 0.99770 1.67509 1.12376 1.10531 1.30264 1.21393 0.89257 0.98132 1.08553 1.20208 1.01993 0.88222 1.02684 0.89092 0.89422 0.86928 0.89170 0.90118 0.91319 0.94983 0.93540 0.92818 0.89721 0.86620 0.84640 0.83100 0.81981 0.81361 0.90741 0.88217 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.21 71.24 0.73 -0.59 16 2 C -0.02 -0.80 7.28 24.76 0.18 -0.62 16 3 O -0.19 -7.29 10.52 4.43 0.05 -7.24 16 4 C 0.04 1.74 7.37 25.26 0.19 1.92 16 5 C -0.06 -2.54 10.24 71.23 0.73 -1.81 16 6 C -0.23 -9.98 4.26 -18.99 -0.08 -10.06 16 7 C 0.60 27.17 7.11 86.65 0.62 27.78 16 8 O -0.57 -28.50 16.69 -4.06 -0.07 -28.57 16 9 N -0.58 -24.52 2.44 -834.46 -2.04 -26.55 16 10 C 0.22 9.54 4.09 85.63 0.35 9.90 16 11 C -0.50 -25.64 9.42 25.60 0.24 -25.40 16 12 H 0.04 2.48 6.76 -2.91 -0.02 2.46 16 13 C 0.03 1.62 5.47 84.66 0.46 2.09 16 14 N -0.93 -53.24 13.96 21.45 0.30 -52.94 16 15 Si 0.92 40.06 27.47 68.60 1.88 41.95 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 19 C 0.17 6.21 5.76 85.63 0.49 6.70 16 20 C 0.10 3.89 6.36 42.55 0.27 4.16 16 21 C -0.14 -5.01 9.57 22.36 0.21 -4.80 16 22 C -0.09 -2.71 10.18 22.47 0.23 -2.48 16 23 C -0.17 -4.87 10.11 22.36 0.23 -4.64 16 24 C 0.07 2.40 11.18 84.67 0.95 3.34 16 25 N -0.50 -19.98 10.27 -183.88 -1.89 -21.87 16 26 C -0.17 -6.13 6.14 -18.49 -0.11 -6.25 16 27 C -0.07 -2.05 10.15 71.24 0.72 -1.32 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.11 1.64 7.14 -2.39 -0.02 1.63 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.07 3.31 6.20 -2.39 -0.01 3.29 16 34 H 0.03 1.47 5.75 -2.39 -0.01 1.45 16 35 H 0.05 1.87 7.32 -2.39 -0.02 1.85 16 36 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.08 3.23 7.42 -2.39 -0.02 3.21 16 38 H 0.12 3.52 7.79 -2.39 -0.02 3.51 16 39 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 42 H 0.17 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 1.97 7.15 -2.39 -0.02 1.95 16 45 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -72.71 381.91 5.59 -67.13 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.95 Total: 30.18 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 6.40 Total: -2.08 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.63 Total: -101.36 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.02 Total: -35.81 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.88 Total: 41.95 kcal Total: -72.71 5.59 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585698442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.113 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds