Wall clock time and date at job start Tue Mar 31 2020 15:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30350 * 125.48048 * 2 1 4 4 C 1.34165 * 108.90257 * 179.73519 * 3 2 1 5 5 C 1.35784 * 107.51713 * 359.97438 * 4 3 2 6 6 C 1.47802 * 126.58309 * 179.97438 * 5 4 3 7 7 C 1.39614 * 120.07459 * 359.73282 * 6 5 4 8 8 C 1.37824 * 119.92139 * 179.76098 * 7 6 5 9 9 C 1.38999 * 120.07781 * 0.48978 * 8 7 6 10 10 N 1.39861 * 119.92386 * 179.74112 * 9 8 7 11 11 C 1.34776 * 119.99791 * 213.45700 * 10 9 8 12 12 O 1.21293 * 119.99989 * 5.28655 * 11 10 9 13 13 C 1.50694 * 120.00039 * 185.27955 * 11 10 9 14 14 C 1.53000 * 109.47135 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47069 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47069 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47142 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99837 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99825 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00404 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00036 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47347 * 89.99869 * 21 19 17 23 23 H 1.48502 * 109.47436 * 210.00293 * 21 19 17 24 24 H 1.48499 * 109.46968 * 330.00322 * 21 19 17 25 25 C 1.38993 * 120.14552 * 359.76330 * 9 8 7 26 26 C 1.37818 * 120.07521 * 0.02562 * 25 9 8 27 27 O 1.34035 * 125.48469 * 179.69377 * 2 1 3 28 28 H 1.08999 * 109.46878 * 90.02454 * 1 2 3 29 29 H 1.09001 * 109.46709 * 210.02469 * 1 2 3 30 30 H 1.09005 * 109.46878 * 330.02619 * 1 2 3 31 31 H 1.08001 * 126.23813 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.03988 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.96104 * 180.20333 * 8 7 6 34 34 H 0.96993 * 120.00108 * 33.46407 * 10 9 8 35 35 H 1.09003 * 109.47213 * 300.00449 * 13 11 10 36 36 H 1.08996 * 109.47345 * 60.00168 * 13 11 10 37 37 H 1.08999 * 109.47356 * 299.99667 * 14 13 11 38 38 H 1.09002 * 109.47274 * 60.00386 * 14 13 11 39 39 H 1.08999 * 109.47402 * 299.99563 * 15 14 13 40 40 H 1.09004 * 109.47178 * 60.00112 * 15 14 13 41 41 H 1.08999 * 109.47356 * 299.99771 * 16 15 14 42 42 H 1.08994 * 109.47458 * 60.00237 * 16 15 14 43 43 H 0.97005 * 120.00678 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.96257 * 179.97438 * 25 9 8 45 45 H 1.08003 * 120.03655 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2636 1.0615 0.0000 4 6 3.5494 0.6787 0.0059 5 6 3.5717 -0.6790 0.0102 6 6 4.7728 -1.5403 0.0167 7 6 6.0454 -0.9662 0.0133 8 6 7.1633 -1.7723 0.0244 9 6 7.0248 -3.1554 0.0286 10 7 8.1614 -3.9703 0.0344 11 6 8.1433 -5.1565 -0.6052 12 8 7.1768 -5.4749 -1.2654 13 6 9.3238 -6.0872 -0.5003 14 6 9.0488 -7.3535 -1.3138 15 6 10.2476 -8.2982 -1.2078 16 6 9.9729 -9.5642 -2.0218 17 6 11.1535 -10.4950 -1.9169 18 1 12.0135 -10.2120 -1.3281 19 6 11.1351 -11.7082 -2.5716 20 7 10.0872 -12.0535 -3.2873 21 14 12.5988 -12.8617 -2.4422 22 1 12.4141 -13.7674 -1.2800 23 1 12.7059 -13.6670 -3.6853 24 1 13.8400 -12.0675 -2.2584 25 6 5.7593 -3.7302 0.0267 26 6 4.6373 -2.9299 0.0200 27 8 2.2850 -1.0914 0.0058 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8903 0.5135 31 1 4.4099 1.3314 0.0077 32 1 6.1538 0.1083 0.0055 33 1 8.1481 -1.3288 0.0251 34 1 8.9626 -3.6819 0.4988 35 1 10.2131 -5.5915 -0.8898 36 1 9.4847 -6.3538 0.5442 37 1 8.1595 -7.8494 -0.9246 38 1 8.8883 -7.0867 -2.3584 39 1 11.1367 -7.8022 -1.5973 40 1 10.4087 -8.5652 -0.1633 41 1 9.0838 -10.0605 -1.6328 42 1 9.8122 -9.2970 -3.0662 43 1 10.0744 -12.9069 -3.7483 44 1 5.6551 -4.8051 0.0295 45 1 3.6542 -3.3772 0.0181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588150852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:19 Heat of formation + Delta-G solvation = -11.699678 kcal Electronic energy + Delta-G solvation = -25321.178862 eV Core-core repulsion = 21497.411233 eV Total energy + Delta-G solvation = -3823.767629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.62923 -40.76315 -38.83560 -35.41480 -35.17556 -34.88370 -32.90073 -32.58761 -31.39284 -30.74405 -29.59302 -27.15081 -25.67003 -24.09987 -23.16181 -22.56592 -21.86004 -21.21147 -20.30453 -20.04900 -18.26091 -17.67346 -17.13157 -17.01917 -16.32828 -16.17496 -15.93574 -15.15320 -14.69009 -14.45239 -14.30345 -14.19024 -14.02566 -13.79322 -13.70262 -13.61688 -13.17818 -13.06885 -12.70122 -12.54241 -12.29965 -11.77931 -11.69664 -11.66829 -11.62402 -11.02101 -10.96482 -10.88562 -10.60116 -10.53778 -10.46832 -10.01483 -9.66085 -9.45388 -9.33124 -9.26093 -9.01962 -8.32685 -8.02333 -5.97339 -4.00122 0.24670 1.02803 1.49826 2.18758 2.28810 2.53677 2.79921 3.32523 3.38767 3.41699 3.48943 3.64105 4.24295 4.41414 4.47075 4.53968 4.58973 4.64128 4.83374 4.90089 4.93545 5.06673 5.09092 5.16400 5.22463 5.24296 5.38125 5.38603 5.51676 5.62126 5.73484 5.84573 5.91952 5.95907 6.05479 6.09370 6.16666 6.21635 6.46739 6.62048 6.77070 6.94674 7.10365 7.16949 7.33484 7.71210 7.86453 7.95399 8.03502 8.45096 9.07495 9.63774 11.13897 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.001525 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.127531 B =18351.494401 C =19083.119622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.187 3.813 3 N -0.482 5.482 4 C -0.029 4.029 5 C 0.007 3.993 6 C -0.043 4.043 7 C -0.072 4.072 8 C -0.146 4.146 9 C 0.168 3.832 10 N -0.682 5.682 11 C 0.512 3.488 12 O -0.511 6.511 13 C -0.137 4.137 14 C -0.105 4.105 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.522 4.522 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.120 4.120 26 C -0.075 4.075 27 O -0.196 6.196 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.186 0.814 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.413 0.587 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.143 0.857 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 28.126 10.528 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.211 5.211 4 C -0.169 4.169 5 C -0.046 4.046 6 C -0.045 4.045 7 C -0.091 4.091 8 C -0.166 4.166 9 C 0.073 3.927 10 N -0.328 5.328 11 C 0.301 3.699 12 O -0.384 6.384 13 C -0.177 4.177 14 C -0.143 4.143 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.140 4.140 26 C -0.094 4.094 27 O -0.084 6.084 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.203 0.797 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.249 0.751 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.160 0.840 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.236 28.222 9.922 33.130 hybrid contribution 1.547 -1.179 0.214 1.957 sum -12.689 27.043 10.136 31.545 Atomic orbital electron populations 1.20286 0.81161 1.05211 1.04834 1.26352 0.96493 0.78447 1.00557 1.70338 1.02170 1.30161 1.18470 1.23276 0.95047 0.92372 1.06179 1.21420 0.82097 0.93789 1.07263 1.17535 0.88416 0.91798 1.06731 1.20754 0.89937 0.99877 0.98539 1.20776 0.99280 0.91407 1.05181 1.17957 0.87236 0.89943 0.97562 1.43826 1.14727 1.19728 1.54474 1.21409 0.90057 0.80977 0.77486 1.90740 1.35493 1.73911 1.38235 1.21837 0.95485 0.96585 1.03810 1.21485 1.00248 0.92897 0.99639 1.21652 0.95339 0.97264 1.00547 1.19098 0.96908 0.90747 0.95011 1.21276 1.02582 1.02034 1.30105 0.92742 1.25036 0.95991 0.98113 0.95374 1.69970 1.29041 1.22258 1.32138 0.86611 0.83073 0.80954 0.77444 1.20703 1.21240 1.19918 1.21150 0.90384 1.01524 1.00962 1.21135 0.99147 0.91864 0.97231 1.84442 1.16335 1.37534 1.70056 0.88795 0.89225 0.88017 0.79699 0.84950 0.84764 0.75100 0.88682 0.88563 0.91665 0.91654 0.93388 0.93388 0.96579 0.96563 0.93026 0.83970 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.71 8.33 -12.91 -0.11 1.60 16 3 N -0.48 -5.11 11.27 -10.80 -0.12 -5.23 16 4 C -0.03 -0.28 11.29 -17.41 -0.20 -0.47 16 5 C 0.01 0.07 7.07 -36.55 -0.26 -0.18 16 6 C -0.04 -0.43 5.87 -104.96 -0.62 -1.04 16 7 C -0.07 -0.57 9.57 -39.22 -0.38 -0.94 16 8 C -0.15 -1.15 9.94 -39.45 -0.39 -1.54 16 9 C 0.17 1.71 6.28 -83.63 -0.53 1.18 16 10 N -0.68 -6.26 5.33 -9.82 -0.05 -6.31 16 11 C 0.51 6.42 7.56 -10.99 -0.08 6.34 16 12 O -0.51 -8.51 13.67 5.55 0.08 -8.43 16 13 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 14 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 15 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 25 C -0.12 -1.39 8.63 -39.46 -0.34 -1.73 16 26 C -0.08 -0.80 9.72 -39.22 -0.38 -1.18 16 27 O -0.20 -2.07 10.59 4.15 0.04 -2.03 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.19 1.19 7.29 -52.49 -0.38 0.81 16 32 H 0.13 0.68 7.03 -52.49 -0.37 0.31 16 33 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.41 2.28 8.82 -40.82 -0.36 1.92 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.14 1.86 6.41 -52.49 -0.34 1.52 16 45 H 0.13 1.29 7.94 -52.48 -0.42 0.88 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -36.18 385.75 -8.87 -45.04 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.48 Total: -1.86 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -3.86 Total: -17.13 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.56 Total: -38.10 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.12 Total: -10.46 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.18 -8.87 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588150852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.343 kcal (2) G-P(sol) polarization free energy of solvation -36.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds