Wall clock time and date at job start Tue Mar 31 2020 15:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34552 * 126.07977 * 2 1 4 4 O 1.34779 * 107.27042 * 180.22027 * 3 2 1 5 5 C 1.34423 * 107.69142 * 359.61375 * 4 3 2 6 6 C 1.47840 * 125.72644 * 180.14611 * 5 4 3 7 7 C 1.39622 * 120.11191 * 180.02562 * 6 5 4 8 8 C 1.37983 * 119.99195 * 179.72248 * 7 6 5 9 9 C 1.38243 * 120.22466 * 0.55144 * 8 7 6 10 10 C 1.38955 * 120.22309 * 359.72614 * 9 8 7 11 11 N 1.39945 * 120.00593 * 180.02562 * 10 9 8 12 12 C 1.34769 * 120.00165 * 213.33861 * 11 10 9 13 13 O 1.21287 * 120.00361 * 5.27152 * 12 11 10 14 14 C 1.50704 * 119.99852 * 185.27336 * 12 11 10 15 15 C 1.53005 * 109.46971 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46735 * 180.02562 * 15 14 12 17 17 C 1.53009 * 109.47071 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47267 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99943 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99996 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99902 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47226 * 89.99709 * 22 20 18 24 24 H 1.48500 * 109.46671 * 210.00127 * 22 20 18 25 25 H 1.48503 * 109.47019 * 329.99761 * 22 20 18 26 26 C 1.38644 * 119.99696 * 359.97438 * 10 9 8 27 27 N 1.31219 * 108.55311 * 0.39134 * 5 4 3 28 28 H 1.09005 * 109.47231 * 89.99368 * 1 2 3 29 29 H 1.08996 * 109.47511 * 209.99423 * 1 2 3 30 30 H 1.09003 * 109.47199 * 330.00036 * 1 2 3 31 31 H 1.07993 * 126.36660 * 359.95804 * 3 2 1 32 32 H 1.07997 * 119.99839 * 359.97438 * 7 6 5 33 33 H 1.08006 * 119.88480 * 180.27353 * 8 7 6 34 34 H 1.08004 * 119.89221 * 179.69403 * 9 8 7 35 35 H 0.97004 * 119.99760 * 33.33584 * 11 10 9 36 36 H 1.08994 * 109.47149 * 299.99853 * 14 12 11 37 37 H 1.09005 * 109.46980 * 59.99900 * 14 12 11 38 38 H 1.09002 * 109.46936 * 299.99586 * 15 14 12 39 39 H 1.08991 * 109.47161 * 60.00066 * 15 14 12 40 40 H 1.09006 * 109.47283 * 299.99260 * 16 15 14 41 41 H 1.08998 * 109.47991 * 59.99507 * 16 15 14 42 42 H 1.09006 * 109.46434 * 299.99745 * 17 16 15 43 43 H 1.08993 * 109.46743 * 59.99152 * 17 16 15 44 44 H 0.97001 * 120.00332 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.10390 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2994 1.0874 0.0000 4 8 3.5752 0.6529 -0.0049 5 6 3.5490 -0.6911 0.0007 6 6 4.7321 -1.5776 0.0012 7 6 4.5684 -2.9641 0.0069 8 6 5.6744 -3.7892 0.0015 9 6 6.9464 -3.2480 0.0020 10 6 7.1199 -1.8693 0.0022 11 7 8.4097 -1.3262 0.0021 12 6 8.6525 -0.1662 0.6437 13 8 7.7780 0.3582 1.3005 14 6 10.0106 0.4796 0.5449 15 6 10.0199 1.7747 1.3595 16 6 11.3985 2.4306 1.2587 17 6 11.4081 3.7255 2.0738 18 6 12.7661 4.3712 1.9750 19 1 13.5446 3.9046 1.3898 20 6 13.0146 5.5578 2.6318 21 7 14.1999 6.1210 2.5460 22 14 11.6682 6.3645 3.6447 23 1 11.7331 5.8652 5.0416 24 1 11.8576 7.8373 3.6360 25 1 10.3436 6.0323 3.0613 26 6 6.0152 -1.0316 0.0013 27 7 2.2971 -1.0843 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.9736 2.1171 -0.0006 32 1 3.5763 -3.3907 0.0114 33 1 5.5458 -4.8616 0.0014 34 1 7.8083 -3.8988 0.0028 35 1 9.1290 -1.7848 -0.4597 36 1 10.7660 -0.2012 0.9370 37 1 10.2308 0.7047 -0.4987 38 1 9.2644 2.4558 0.9677 39 1 9.7999 1.5493 2.4029 40 1 12.1544 1.7498 1.6502 41 1 11.6183 2.6561 0.2152 42 1 10.6522 4.4065 1.6827 43 1 11.1885 3.4995 3.1172 44 1 14.3747 6.9560 3.0078 45 1 6.1480 0.0402 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:17 Heat of formation + Delta-G solvation = -6.937774 kcal Electronic energy + Delta-G solvation = -25914.715176 eV Core-core repulsion = 22091.154038 eV Total energy + Delta-G solvation = -3823.561137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.55664 -40.77476 -38.82899 -35.53580 -35.32972 -34.94537 -32.83382 -32.62977 -30.99732 -30.55778 -29.40851 -27.50988 -26.06667 -24.34620 -23.50493 -22.18427 -21.31308 -21.23391 -20.25747 -20.06564 -18.36796 -17.13980 -16.93914 -16.93350 -16.58298 -16.50964 -15.99659 -15.34438 -15.09150 -14.54289 -14.31218 -14.21459 -13.98091 -13.80449 -13.69019 -13.32686 -13.28758 -12.68592 -12.55268 -12.49140 -12.22710 -12.05898 -11.94254 -11.77959 -11.41817 -11.16068 -10.87686 -10.78881 -10.74512 -10.58029 -10.08988 -9.86406 -9.83581 -9.67677 -9.48470 -9.14189 -8.68544 -8.50921 -8.37192 -6.02024 -3.99631 0.30568 0.97134 1.48354 2.31834 2.39031 2.54018 2.76565 3.34088 3.41179 3.46895 3.48363 3.55351 4.40054 4.48608 4.50157 4.55273 4.62960 4.71560 4.86954 5.02256 5.08730 5.13061 5.14487 5.19086 5.19351 5.32733 5.33300 5.46952 5.56036 5.63344 5.68552 5.85032 5.95145 5.96372 5.99490 6.08120 6.08565 6.13875 6.35195 6.59511 6.63046 6.76964 6.95361 7.10749 7.35349 7.40125 7.48118 7.82906 7.94018 8.56446 9.02772 9.61251 11.11392 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.002196 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.478381 B =12749.934087 C =14688.731329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.016 4.016 3 C -0.072 4.072 4 O -0.189 6.189 5 C 0.239 3.761 6 C -0.002 4.002 7 C -0.090 4.090 8 C -0.101 4.101 9 C -0.128 4.128 10 C 0.152 3.848 11 N -0.681 5.681 12 C 0.511 3.489 13 O -0.513 6.513 14 C -0.137 4.137 15 C -0.108 4.108 16 C -0.103 4.103 17 C -0.016 4.016 18 C -0.520 4.520 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 C -0.093 4.093 27 N -0.471 5.471 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.217 0.783 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.414 0.586 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.773 -21.149 -8.967 33.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 C -0.143 4.143 4 O -0.075 6.075 5 C 0.035 3.965 6 C -0.004 4.004 7 C -0.110 4.110 8 C -0.120 4.120 9 C -0.149 4.149 10 C 0.058 3.942 11 N -0.327 5.327 12 C 0.300 3.700 13 O -0.387 6.387 14 C -0.177 4.177 15 C -0.146 4.146 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.558 4.558 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.114 4.114 27 N -0.201 5.201 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.234 0.766 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.250 0.750 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.397 -21.121 -8.427 33.352 hybrid contribution -0.027 1.152 0.365 1.209 sum -24.424 -19.969 -8.062 32.562 Atomic orbital electron populations 1.20110 0.86224 1.03503 1.02961 1.21835 0.98265 0.88134 1.05484 1.24954 0.79893 1.01219 1.08212 1.84567 1.30447 1.23325 1.69157 1.23727 0.93008 0.78788 1.00933 1.17080 0.87289 0.90926 1.05121 1.21109 1.00122 0.90870 0.98875 1.20871 0.91191 1.00080 0.99813 1.21119 0.98451 0.92908 1.02458 1.17548 0.84839 0.91855 0.99997 1.43751 1.09199 1.25050 1.54688 1.21383 0.91524 0.79589 0.77484 1.90741 1.47266 1.62080 1.38585 1.21812 0.92536 0.99489 1.03859 1.21512 0.99640 0.93690 0.99713 1.21479 0.93687 0.98143 1.00713 1.19577 0.97679 0.93045 0.94992 1.21172 0.96772 1.06744 1.31090 0.91095 1.25046 0.95348 0.96991 0.96249 1.69916 1.21459 1.19097 1.43975 0.86774 0.83219 0.78372 0.80936 1.20314 1.21444 1.18921 1.21230 0.89889 1.01387 0.98928 1.70517 0.99766 1.31125 1.18657 0.90636 0.90515 0.90579 0.76629 0.84398 0.84600 0.84977 0.75007 0.88520 0.88425 0.91685 0.91653 0.92774 0.92749 0.96622 0.97051 0.92803 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.00 0.38 -0.07 16 2 C -0.02 -0.16 7.10 -82.88 -0.59 -0.75 16 3 C -0.07 -0.70 12.08 29.43 0.36 -0.35 16 4 O -0.19 -2.46 10.52 4.06 0.04 -2.42 16 5 C 0.24 3.10 7.90 -13.89 -0.11 2.99 16 6 C 0.00 -0.03 5.87 -105.01 -0.62 -0.64 16 7 C -0.09 -0.85 9.68 -39.16 -0.38 -1.23 16 8 C -0.10 -0.74 10.02 -39.67 -0.40 -1.14 16 9 C -0.13 -0.99 9.95 -39.31 -0.39 -1.38 16 10 C 0.15 1.56 6.27 -83.74 -0.53 1.04 16 11 N -0.68 -6.24 5.34 -9.89 -0.05 -6.29 16 12 C 0.51 6.36 7.57 -10.99 -0.08 6.28 16 13 O -0.51 -8.53 13.67 5.55 0.08 -8.45 16 14 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 15 C -0.11 -1.73 4.50 -26.73 -0.12 -1.85 16 16 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 17 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 18 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 19 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 22 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 26 C -0.09 -1.15 8.32 -38.98 -0.32 -1.47 16 27 N -0.47 -5.87 10.91 -7.97 -0.09 -5.96 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.22 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.14 1.19 7.83 -52.49 -0.41 0.78 16 33 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.41 2.24 8.82 -40.82 -0.36 1.88 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.14 2.08 6.25 -52.49 -0.33 1.75 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -36.71 383.67 -8.30 -45.01 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.52 Total: -1.40 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.64 Total: -16.42 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.63 Total: -39.74 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.12 Total: -10.87 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.71 -8.30 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.077 kcal (2) G-P(sol) polarization free energy of solvation -36.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds