Wall clock time and date at job start Tue Mar 31 2020 15:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34552 * 126.07977 * 2 1 4 4 O 1.34779 * 107.27042 * 180.22027 * 3 2 1 5 5 C 1.34423 * 107.69142 * 359.61375 * 4 3 2 6 6 C 1.47840 * 125.72644 * 180.14611 * 5 4 3 7 7 C 1.39622 * 120.11191 * 180.02562 * 6 5 4 8 8 C 1.37983 * 119.99195 * 179.72248 * 7 6 5 9 9 C 1.38243 * 120.22466 * 0.55144 * 8 7 6 10 10 C 1.38955 * 120.22309 * 359.72614 * 9 8 7 11 11 N 1.39945 * 120.00593 * 180.02562 * 10 9 8 12 12 C 1.34769 * 120.00165 * 213.33861 * 11 10 9 13 13 O 1.21287 * 120.00361 * 5.27152 * 12 11 10 14 14 C 1.50704 * 119.99852 * 185.27336 * 12 11 10 15 15 C 1.53005 * 109.46971 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46735 * 180.02562 * 15 14 12 17 17 C 1.53009 * 109.47071 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47267 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99943 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99996 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99902 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47226 * 89.99709 * 22 20 18 24 24 H 1.48500 * 109.46671 * 210.00127 * 22 20 18 25 25 H 1.48503 * 109.47019 * 329.99761 * 22 20 18 26 26 C 1.38644 * 119.99696 * 359.97438 * 10 9 8 27 27 N 1.31219 * 108.55311 * 0.39134 * 5 4 3 28 28 H 1.09005 * 109.47231 * 89.99368 * 1 2 3 29 29 H 1.08996 * 109.47511 * 209.99423 * 1 2 3 30 30 H 1.09003 * 109.47199 * 330.00036 * 1 2 3 31 31 H 1.07993 * 126.36660 * 359.95804 * 3 2 1 32 32 H 1.07997 * 119.99839 * 359.97438 * 7 6 5 33 33 H 1.08006 * 119.88480 * 180.27353 * 8 7 6 34 34 H 1.08004 * 119.89221 * 179.69403 * 9 8 7 35 35 H 0.97004 * 119.99760 * 33.33584 * 11 10 9 36 36 H 1.08994 * 109.47149 * 299.99853 * 14 12 11 37 37 H 1.09005 * 109.46980 * 59.99900 * 14 12 11 38 38 H 1.09002 * 109.46936 * 299.99586 * 15 14 12 39 39 H 1.08991 * 109.47161 * 60.00066 * 15 14 12 40 40 H 1.09006 * 109.47283 * 299.99260 * 16 15 14 41 41 H 1.08998 * 109.47991 * 59.99507 * 16 15 14 42 42 H 1.09006 * 109.46434 * 299.99745 * 17 16 15 43 43 H 1.08993 * 109.46743 * 59.99152 * 17 16 15 44 44 H 0.97001 * 120.00332 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.10390 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2994 1.0874 0.0000 4 8 3.5752 0.6529 -0.0049 5 6 3.5490 -0.6911 0.0007 6 6 4.7321 -1.5776 0.0012 7 6 4.5684 -2.9641 0.0069 8 6 5.6744 -3.7892 0.0015 9 6 6.9464 -3.2480 0.0020 10 6 7.1199 -1.8693 0.0022 11 7 8.4097 -1.3262 0.0021 12 6 8.6525 -0.1662 0.6437 13 8 7.7780 0.3582 1.3005 14 6 10.0106 0.4796 0.5449 15 6 10.0199 1.7747 1.3595 16 6 11.3985 2.4306 1.2587 17 6 11.4081 3.7255 2.0738 18 6 12.7661 4.3712 1.9750 19 1 13.5446 3.9046 1.3898 20 6 13.0146 5.5578 2.6318 21 7 14.1999 6.1210 2.5460 22 14 11.6682 6.3645 3.6447 23 1 11.7331 5.8652 5.0416 24 1 11.8576 7.8373 3.6360 25 1 10.3436 6.0323 3.0613 26 6 6.0152 -1.0316 0.0013 27 7 2.2971 -1.0843 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.9736 2.1171 -0.0006 32 1 3.5763 -3.3907 0.0114 33 1 5.5458 -4.8616 0.0014 34 1 7.8083 -3.8988 0.0028 35 1 9.1290 -1.7848 -0.4597 36 1 10.7660 -0.2012 0.9370 37 1 10.2308 0.7047 -0.4987 38 1 9.2644 2.4558 0.9677 39 1 9.7999 1.5493 2.4029 40 1 12.1544 1.7498 1.6502 41 1 11.6183 2.6561 0.2152 42 1 10.6522 4.4065 1.6827 43 1 11.1885 3.4995 3.1172 44 1 14.3747 6.9560 3.0078 45 1 6.1480 0.0402 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:17 Heat of formation + Delta-G solvation = -32.531836 kcal Electronic energy + Delta-G solvation = -25915.825017 eV Core-core repulsion = 22091.154038 eV Total energy + Delta-G solvation = -3824.670979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.38925 -41.63294 -39.66240 -36.76873 -36.32867 -35.96953 -34.63027 -33.54652 -32.19928 -31.50841 -30.45864 -28.16441 -27.64907 -25.12070 -24.64022 -23.39512 -22.28136 -22.04477 -21.69262 -21.16521 -19.17296 -18.85579 -18.01790 -17.80827 -17.69479 -17.27486 -16.96629 -16.36862 -16.16259 -15.92398 -15.53177 -15.27739 -14.97329 -14.72283 -14.55211 -14.25339 -14.15527 -13.96935 -13.80302 -13.70889 -13.54268 -13.12102 -12.88209 -12.77882 -12.64747 -12.35834 -12.23975 -12.08871 -11.77185 -11.73436 -11.57609 -11.52364 -11.34747 -11.27320 -10.86661 -10.77011 -10.54106 -9.47267 -9.11105 -8.30625 -6.33428 -0.46266 0.21435 0.72982 1.33322 1.34800 1.47423 1.48264 1.63744 1.67470 1.97830 2.34533 2.74858 2.80767 3.04702 3.65748 3.76948 3.85702 3.91550 3.97385 4.10835 4.13995 4.15581 4.36252 4.41082 4.50191 4.60261 4.63953 4.73513 4.75823 4.77533 4.79065 4.84442 4.87651 4.95040 5.12491 5.17004 5.20677 5.25146 5.28207 5.32937 5.38488 5.43065 5.59771 5.64880 5.67905 5.88077 6.28586 6.38654 6.57138 6.74580 7.10822 7.31310 8.85810 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.002196 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.478381 B =12749.934087 C =14688.731329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.031 4.031 3 C -0.077 4.077 4 O -0.214 6.214 5 C 0.214 3.786 6 C -0.024 4.024 7 C -0.093 4.093 8 C -0.089 4.089 9 C -0.113 4.113 10 C 0.137 3.863 11 N -0.661 5.661 12 C 0.511 3.489 13 O -0.564 6.564 14 C -0.127 4.127 15 C -0.100 4.100 16 C -0.094 4.094 17 C -0.018 4.018 18 C -0.529 4.529 19 H 0.038 0.962 20 C 0.003 3.997 21 N -0.949 5.949 22 Si 0.946 3.054 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.254 1.254 26 C -0.116 4.116 27 N -0.486 5.486 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.253 0.747 32 H 0.142 0.858 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.434 0.566 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.012 0.988 43 H 0.012 0.988 44 H 0.266 0.734 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.084 -23.430 -9.207 35.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.152 4.152 3 C -0.147 4.147 4 O -0.101 6.101 5 C 0.011 3.989 6 C -0.026 4.026 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.134 4.134 10 C 0.042 3.958 11 N -0.309 5.309 12 C 0.301 3.699 13 O -0.441 6.441 14 C -0.167 4.167 15 C -0.138 4.138 16 C -0.131 4.131 17 C -0.055 4.055 18 C -0.567 4.567 19 H 0.057 0.943 20 C -0.193 4.193 21 N -0.590 5.590 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.178 1.178 26 C -0.138 4.138 27 N -0.217 5.217 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.269 0.731 32 H 0.160 0.840 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.274 0.726 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -25.697 -23.450 -8.703 35.861 hybrid contribution 0.392 1.808 0.382 1.889 sum -25.305 -21.643 -8.321 34.322 Atomic orbital electron populations 1.20243 0.83518 1.04567 1.04060 1.22524 0.99976 0.87654 1.05091 1.25768 0.78833 1.02873 1.07180 1.84561 1.32188 1.23760 1.69555 1.24155 0.93743 0.79010 1.01967 1.17307 0.86840 0.91984 1.06480 1.21317 1.01345 0.90001 0.98586 1.21334 0.90203 1.01679 0.97539 1.21520 0.99960 0.91841 1.00034 1.17739 0.84403 0.92893 1.00735 1.43493 1.09560 1.24050 1.53748 1.21503 0.91211 0.80114 0.77061 1.90739 1.48702 1.63598 1.41058 1.21709 0.92798 0.97581 1.04588 1.21301 0.96925 0.95639 0.99904 1.21339 0.95816 0.96015 0.99956 1.19585 0.94704 0.95246 0.96009 1.21541 0.98109 1.06922 1.30165 0.94320 1.25987 0.97795 0.97847 0.97714 1.70054 1.23673 1.19866 1.45433 0.85710 0.80347 0.77469 0.79450 1.19247 1.20730 1.17751 1.21074 0.91244 1.00273 1.01233 1.70506 0.99916 1.32210 1.19077 0.89413 0.90728 0.88216 0.73093 0.83973 0.80744 0.81192 0.72587 0.85595 0.85946 0.93206 0.92897 0.92121 0.92309 0.96971 0.96969 0.92527 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 71.23 0.74 -0.02 16 2 C -0.03 -0.64 7.10 41.36 0.29 -0.35 16 3 C -0.08 -1.53 12.08 66.98 0.81 -0.72 16 4 O -0.21 -5.97 10.52 -8.37 -0.09 -6.06 16 5 C 0.21 5.90 7.90 87.33 0.69 6.59 16 6 C -0.02 -0.60 5.87 -20.11 -0.12 -0.72 16 7 C -0.09 -1.67 9.68 22.54 0.22 -1.45 16 8 C -0.09 -1.04 10.02 22.21 0.22 -0.81 16 9 C -0.11 -1.36 9.95 22.44 0.22 -1.14 16 10 C 0.14 2.64 6.27 38.11 0.24 2.88 16 11 N -0.66 -10.83 5.34 -303.60 -1.62 -12.45 16 12 C 0.51 12.25 7.57 87.66 0.66 12.91 16 13 O -0.56 -19.26 13.67 -3.05 -0.04 -19.30 16 14 C -0.13 -2.64 5.70 29.85 0.17 -2.47 16 15 C -0.10 -3.12 4.50 30.60 0.14 -2.98 16 16 C -0.09 -3.50 5.15 30.60 0.16 -3.34 16 17 C -0.02 -0.87 4.04 29.85 0.12 -0.75 16 18 C -0.53 -31.07 9.66 25.60 0.25 -30.83 16 19 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 20 C 0.00 0.20 5.47 84.66 0.46 0.66 16 21 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 22 Si 0.95 46.10 27.47 68.60 1.88 47.98 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 26 C -0.12 -3.02 8.32 22.66 0.19 -2.83 16 27 N -0.49 -12.53 10.91 -293.18 -3.20 -15.73 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.25 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.14 2.36 7.83 -2.91 -0.02 2.34 16 33 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.43 3.23 8.82 -92.71 -0.82 2.41 16 36 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 39 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 40 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.01 0.59 7.20 -2.38 -0.02 0.57 16 43 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 44 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 45 H 0.11 3.59 6.25 -2.91 -0.02 3.58 16 Total: -1.00 -84.81 383.67 2.83 -81.98 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.13 Total: 9.03 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 5.47 Total: -25.36 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.52 Total: -88.26 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.13 Total: -25.37 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.98 kcal Total: -84.81 2.83 -81.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.444 kcal (2) G-P(sol) polarization free energy of solvation -84.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds