Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38355 * 119.85325 * 2 1 4 4 C 1.37966 * 120.14502 * 179.72092 * 3 2 1 5 5 C 1.39567 * 119.84989 * 0.25985 * 4 3 2 6 6 C 1.47838 * 120.14276 * 180.02562 * 5 4 3 7 7 N 1.31218 * 125.72678 * 180.02562 * 6 5 4 8 8 C 1.34153 * 108.64629 * 179.97438 * 7 6 5 9 9 C 1.50695 * 126.08055 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47451 * 274.97447 * 9 8 7 11 11 C 1.47896 * 110.99751 * 69.87123 * 10 9 8 12 12 C 1.53991 * 107.05836 * 214.15830 * 11 10 9 13 13 C 1.54596 * 105.13962 * 1.22721 * 12 11 10 14 14 O 1.42904 * 110.72585 * 263.59907 * 13 12 11 15 15 C 1.50702 * 110.72361 * 140.49456 * 13 12 11 16 16 H 1.07998 * 119.99565 * 241.45427 * 15 13 12 17 17 C 1.37868 * 120.00309 * 61.45640 * 15 13 12 18 18 N 1.31518 * 120.00184 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00355 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46961 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47299 * 119.99697 * 19 17 15 22 22 H 1.48503 * 109.47054 * 239.99947 * 19 17 15 23 23 C 1.48532 * 110.99580 * 312.47766 * 10 9 8 24 24 C 1.34547 * 107.84002 * 359.97438 * 8 7 6 25 25 O 1.34428 * 125.72058 * 359.69199 * 6 5 4 26 26 C 1.39570 * 119.71408 * 0.02562 * 5 4 3 27 27 C 1.37958 * 119.85264 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.47197 * 89.99647 * 1 2 3 29 29 H 1.09001 * 109.46979 * 209.99263 * 1 2 3 30 30 H 1.08998 * 109.46875 * 330.00070 * 1 2 3 31 31 H 1.08002 * 119.93063 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.07381 * 180.27857 * 4 3 2 33 33 H 1.09001 * 109.47530 * 34.97362 * 9 8 7 34 34 H 1.09005 * 109.47159 * 154.97517 * 9 8 7 35 35 H 1.09003 * 109.92114 * 333.51530 * 11 10 9 36 36 H 1.09004 * 109.91573 * 94.81006 * 11 10 9 37 37 H 1.08999 * 110.31184 * 120.14568 * 12 11 10 38 38 H 1.09005 * 110.31269 * 242.21428 * 12 11 10 39 39 H 0.96700 * 113.99763 * 298.55121 * 14 13 12 40 40 H 0.97002 * 120.00401 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.66990 * 278.15537 * 23 10 9 42 42 H 1.08998 * 110.67189 * 41.28403 * 23 10 9 43 43 H 1.08004 * 126.36349 * 179.97438 * 24 8 7 44 44 H 1.08005 * 120.06962 * 180.02562 * 26 5 4 45 45 H 1.08005 * 119.92274 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0058 5 6 4.2762 0.0000 0.0062 6 6 5.7545 0.0000 0.0130 7 7 6.5207 -1.0652 0.0135 8 6 7.8031 -0.6712 0.0200 9 6 9.0091 -1.5748 0.0222 10 7 9.3234 -1.9686 1.4021 11 6 8.2955 -2.8868 1.9384 12 6 8.1554 -2.5801 3.4409 13 6 9.1390 -1.4180 3.7092 14 8 10.3828 -1.9133 4.2091 15 6 8.5394 -0.4225 4.6687 16 1 8.3761 0.5982 4.3558 17 6 8.1993 -0.8148 5.9459 18 7 8.3976 -2.0579 6.3268 19 14 7.4553 0.4189 7.1350 20 1 7.3356 1.7399 6.4672 21 1 6.1095 -0.0477 7.5549 22 1 8.3300 0.5455 8.3285 23 6 9.3237 -0.7893 2.3052 24 6 7.8209 0.6741 0.0228 25 8 6.5394 1.0914 0.0133 26 6 3.5753 -1.2069 0.0002 27 6 2.1958 -1.1999 -0.0056 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6522 2.1332 0.0004 32 1 4.1118 2.1443 0.0103 33 1 8.7975 -2.4648 -0.5703 34 1 9.8600 -1.0461 -0.4075 35 1 7.3446 -2.7150 1.4340 36 1 8.6117 -3.9206 1.7984 37 1 7.1352 -2.2729 3.6709 38 1 8.4292 -3.4537 4.0326 39 1 10.3088 -2.3850 5.0500 40 1 8.1580 -2.3340 7.2253 41 1 10.2734 -0.2578 2.2436 42 1 8.4933 -0.1239 2.0694 43 1 8.6991 1.3029 0.0284 44 1 4.1118 -2.1443 0.0009 45 1 1.6523 -2.1332 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = 6.459154 kcal Electronic energy + Delta-G solvation = -28104.104242 eV Core-core repulsion = 24281.124039 eV Total energy + Delta-G solvation = -3822.980203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.18339 -39.39820 -38.40945 -35.40213 -34.19072 -33.42943 -32.07283 -31.19682 -30.88130 -29.17224 -27.99465 -26.98226 -25.75428 -23.95779 -22.93494 -22.84538 -21.15642 -20.83894 -19.75258 -19.41506 -17.59206 -17.08695 -16.46426 -16.08469 -15.53148 -15.40680 -15.08784 -14.88248 -14.45822 -14.39231 -14.01555 -13.74247 -13.67853 -13.63410 -13.05960 -13.00140 -12.48719 -12.43218 -12.36413 -11.87948 -11.65265 -11.53888 -11.24860 -11.22468 -11.08619 -10.92158 -10.83948 -10.58254 -10.46678 -10.37631 -10.22427 -9.71355 -9.44294 -9.14580 -9.10918 -8.55669 -8.10104 -8.02749 -7.75230 -6.17091 -4.24832 0.59847 1.22780 1.87075 2.76115 2.83561 3.22297 3.30622 3.34813 3.67667 3.94519 4.32215 4.60347 4.63733 4.76035 4.82256 4.94924 5.04396 5.10868 5.12795 5.21258 5.32071 5.46873 5.47801 5.58567 5.74669 5.81239 5.82420 5.87082 5.90973 5.98494 6.09461 6.13183 6.22346 6.29927 6.32390 6.36684 6.45494 6.61400 6.65211 6.72932 6.93976 7.14047 7.44959 7.56941 7.60197 7.70977 7.85685 7.86651 8.23124 8.77130 9.43750 9.59815 10.90045 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.004024 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.348385 B = 6956.937253 C = 8379.191249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.087 4.087 5 C -0.015 4.015 6 C 0.222 3.778 7 N -0.455 5.455 8 C -0.030 4.030 9 C 0.121 3.879 10 N -0.500 5.500 11 C 0.027 3.973 12 C -0.126 4.126 13 C 0.257 3.743 14 O -0.581 6.581 15 C -0.535 4.535 16 H 0.058 0.942 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.281 1.281 23 C 0.045 3.955 24 C -0.061 4.061 25 O -0.197 6.197 26 C -0.066 4.066 27 C -0.123 4.123 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.377 0.623 40 H 0.265 0.735 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.216 0.784 44 H 0.139 0.861 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 3.855 -14.581 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.016 4.016 6 C 0.019 3.981 7 N -0.185 5.185 8 C -0.153 4.153 9 C -0.008 4.008 10 N -0.222 5.222 11 C -0.101 4.101 12 C -0.165 4.165 13 C 0.217 3.783 14 O -0.389 6.389 15 C -0.573 4.573 16 H 0.076 0.924 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.082 4.082 24 C -0.133 4.133 25 O -0.083 6.083 26 C -0.085 4.085 27 C -0.140 4.140 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.226 0.774 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.233 0.767 44 H 0.157 0.843 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.141 3.163 -15.002 18.952 hybrid contribution -1.049 1.527 1.360 2.298 sum -12.190 4.690 -13.642 18.886 Atomic orbital electron populations 1.20836 0.90925 1.03098 1.02446 1.20109 0.96346 0.93153 0.97756 1.20915 0.93471 0.97868 1.01870 1.21219 0.94407 0.97116 0.97878 1.17269 0.84099 0.94789 1.05455 1.23740 0.92978 0.79085 1.02287 1.70538 1.01586 1.29193 1.17139 1.22784 0.94169 0.93663 1.04681 1.20945 0.89724 0.96370 0.93804 1.65134 1.43707 1.13318 1.00004 1.23035 0.93383 0.96152 0.97530 1.22874 1.01053 1.00815 0.91712 1.19317 0.81273 0.89374 0.88350 1.86132 1.33069 1.76964 1.42709 1.21607 1.41356 0.96827 0.97548 0.92408 1.24971 0.94695 0.95304 0.98057 1.69746 1.48276 1.15957 1.19305 0.86485 0.78824 0.81482 0.80902 1.19774 1.20905 1.20712 1.23342 0.99982 0.91779 0.93085 1.24958 0.84550 0.96349 1.07449 1.84452 1.17027 1.37015 1.69850 1.21190 0.93873 0.97371 0.96041 1.20980 0.93513 0.97915 1.01638 0.90947 0.91251 0.91345 0.85403 0.85197 0.89699 0.89335 0.92990 0.92090 0.92496 0.91704 0.77414 0.92471 0.91081 0.93186 0.76736 0.84337 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.00 36.01 0.36 -0.42 16 2 C -0.07 -0.71 5.89 -104.54 -0.62 -1.32 16 3 C -0.12 -1.24 9.68 -39.64 -0.38 -1.62 16 4 C -0.09 -1.05 9.72 -39.19 -0.38 -1.43 16 5 C -0.01 -0.21 5.87 -104.98 -0.62 -0.83 16 6 C 0.22 3.69 7.90 -13.89 -0.11 3.58 16 7 N -0.45 -8.06 9.60 -7.97 -0.08 -8.13 16 8 C -0.03 -0.50 4.60 -82.89 -0.38 -0.88 16 9 C 0.12 1.96 6.03 -4.98 -0.03 1.93 16 10 N -0.50 -10.06 5.54 -231.89 -1.28 -11.35 16 11 C 0.03 0.56 6.46 -2.76 -0.02 0.55 16 12 C -0.13 -3.09 5.26 -25.38 -0.13 -3.23 16 13 C 0.26 6.64 0.95 -89.91 -0.09 6.55 16 14 O -0.58 -15.74 13.09 -35.23 -0.46 -16.20 16 15 C -0.53 -14.84 8.15 -34.44 -0.28 -15.12 16 16 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 17 C 0.07 1.96 5.28 -17.82 -0.09 1.87 16 18 N -0.89 -24.56 11.00 55.43 0.61 -23.95 16 19 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.05 1.01 5.37 -1.90 -0.01 1.00 16 24 C -0.06 -0.93 10.51 29.43 0.31 -0.62 16 25 O -0.20 -3.17 10.52 4.05 0.04 -3.13 16 26 C -0.07 -0.85 9.69 -39.19 -0.38 -1.23 16 27 C -0.12 -1.29 9.68 -39.64 -0.38 -1.67 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.44 7.90 -52.49 -0.41 1.02 16 33 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.08 6.02 -51.93 -0.31 0.77 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 38 H 0.06 1.66 7.98 -51.93 -0.41 1.25 16 39 H 0.38 10.28 7.46 45.56 0.34 10.62 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.05 1.11 5.07 -51.93 -0.26 0.85 16 43 H 0.22 2.47 8.06 -52.48 -0.42 2.05 16 44 H 0.14 1.82 7.83 -52.48 -0.41 1.41 16 45 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -31.26 368.84 -9.51 -40.77 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.65 Total: 13.08 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.23 Total: -12.90 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.75 Total: -43.43 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.42 Total: -19.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.26 -9.51 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.232 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds