Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38355 * 119.85325 * 2 1 4 4 C 1.37966 * 120.14502 * 179.72092 * 3 2 1 5 5 C 1.39567 * 119.84989 * 0.25985 * 4 3 2 6 6 C 1.47838 * 120.14276 * 180.02562 * 5 4 3 7 7 N 1.31218 * 125.72678 * 180.02562 * 6 5 4 8 8 C 1.34153 * 108.64629 * 179.97438 * 7 6 5 9 9 C 1.50695 * 126.08055 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47451 * 274.97447 * 9 8 7 11 11 C 1.47896 * 110.99751 * 69.87123 * 10 9 8 12 12 C 1.53991 * 107.05836 * 214.15830 * 11 10 9 13 13 C 1.54596 * 105.13962 * 1.22721 * 12 11 10 14 14 O 1.42904 * 110.72585 * 263.59907 * 13 12 11 15 15 C 1.50702 * 110.72361 * 140.49456 * 13 12 11 16 16 H 1.07998 * 119.99565 * 241.45427 * 15 13 12 17 17 C 1.37868 * 120.00309 * 61.45640 * 15 13 12 18 18 N 1.31518 * 120.00184 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00355 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46961 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47299 * 119.99697 * 19 17 15 22 22 H 1.48503 * 109.47054 * 239.99947 * 19 17 15 23 23 C 1.48532 * 110.99580 * 312.47766 * 10 9 8 24 24 C 1.34547 * 107.84002 * 359.97438 * 8 7 6 25 25 O 1.34428 * 125.72058 * 359.69199 * 6 5 4 26 26 C 1.39570 * 119.71408 * 0.02562 * 5 4 3 27 27 C 1.37958 * 119.85264 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.47197 * 89.99647 * 1 2 3 29 29 H 1.09001 * 109.46979 * 209.99263 * 1 2 3 30 30 H 1.08998 * 109.46875 * 330.00070 * 1 2 3 31 31 H 1.08002 * 119.93063 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.07381 * 180.27857 * 4 3 2 33 33 H 1.09001 * 109.47530 * 34.97362 * 9 8 7 34 34 H 1.09005 * 109.47159 * 154.97517 * 9 8 7 35 35 H 1.09003 * 109.92114 * 333.51530 * 11 10 9 36 36 H 1.09004 * 109.91573 * 94.81006 * 11 10 9 37 37 H 1.08999 * 110.31184 * 120.14568 * 12 11 10 38 38 H 1.09005 * 110.31269 * 242.21428 * 12 11 10 39 39 H 0.96700 * 113.99763 * 298.55121 * 14 13 12 40 40 H 0.97002 * 120.00401 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.66990 * 278.15537 * 23 10 9 42 42 H 1.08998 * 110.67189 * 41.28403 * 23 10 9 43 43 H 1.08004 * 126.36349 * 179.97438 * 24 8 7 44 44 H 1.08005 * 120.06962 * 180.02562 * 26 5 4 45 45 H 1.08005 * 119.92274 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0058 5 6 4.2762 0.0000 0.0062 6 6 5.7545 0.0000 0.0130 7 7 6.5207 -1.0652 0.0135 8 6 7.8031 -0.6712 0.0200 9 6 9.0091 -1.5748 0.0222 10 7 9.3234 -1.9686 1.4021 11 6 8.2955 -2.8868 1.9384 12 6 8.1554 -2.5801 3.4409 13 6 9.1390 -1.4180 3.7092 14 8 10.3828 -1.9133 4.2091 15 6 8.5394 -0.4225 4.6687 16 1 8.3761 0.5982 4.3558 17 6 8.1993 -0.8148 5.9459 18 7 8.3976 -2.0579 6.3268 19 14 7.4553 0.4189 7.1350 20 1 7.3356 1.7399 6.4672 21 1 6.1095 -0.0477 7.5549 22 1 8.3300 0.5455 8.3285 23 6 9.3237 -0.7893 2.3052 24 6 7.8209 0.6741 0.0228 25 8 6.5394 1.0914 0.0133 26 6 3.5753 -1.2069 0.0002 27 6 2.1958 -1.1999 -0.0056 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6522 2.1332 0.0004 32 1 4.1118 2.1443 0.0103 33 1 8.7975 -2.4648 -0.5703 34 1 9.8600 -1.0461 -0.4075 35 1 7.3446 -2.7150 1.4340 36 1 8.6117 -3.9206 1.7984 37 1 7.1352 -2.2729 3.6709 38 1 8.4292 -3.4537 4.0326 39 1 10.3088 -2.3850 5.0500 40 1 8.1580 -2.3340 7.2253 41 1 10.2734 -0.2578 2.2436 42 1 8.4933 -0.1239 2.0694 43 1 8.6991 1.3029 0.0284 44 1 4.1118 -2.1443 0.0009 45 1 1.6523 -2.1332 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -16.301894 kcal Electronic energy + Delta-G solvation = -28105.091236 eV Core-core repulsion = 24281.124039 eV Total energy + Delta-G solvation = -3823.967196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.39714 -40.30435 -40.09959 -37.10106 -35.57178 -34.42950 -34.19620 -32.41115 -31.98460 -30.55802 -29.80065 -28.00026 -27.38640 -25.65477 -23.91529 -23.85826 -22.53506 -21.94635 -21.39435 -21.14031 -19.09326 -18.71729 -17.80703 -17.12891 -17.04470 -16.85848 -16.38541 -16.25023 -16.10192 -15.80642 -15.40362 -14.83548 -14.65108 -14.62815 -14.49525 -14.46798 -14.13233 -13.62062 -13.37846 -13.22595 -13.17110 -13.03121 -12.88836 -12.60194 -12.43477 -12.36012 -12.30341 -12.26316 -12.14501 -12.01453 -11.74660 -11.54917 -11.10930 -10.63980 -10.46832 -10.12721 -10.01362 -9.41564 -9.11119 -8.25287 -6.40974 -0.39526 0.36437 0.75930 1.33452 1.35984 1.46600 1.63305 1.65624 2.33575 2.75365 2.83144 2.99323 3.22674 3.70102 3.81823 3.87425 3.94845 3.97590 3.98370 4.10726 4.20373 4.35611 4.38497 4.45308 4.47856 4.65728 4.70605 4.74569 4.78047 4.80955 4.86118 4.86926 4.87693 5.03912 5.06596 5.10186 5.22542 5.25431 5.38303 5.40169 5.45995 5.52021 5.57339 5.69928 5.85919 5.91328 6.11173 6.21080 6.63921 6.64767 7.30681 7.44709 8.80630 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.004024 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.348385 B = 6956.937253 C = 8379.191249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 C -0.123 4.123 4 C -0.093 4.093 5 C -0.049 4.049 6 C 0.215 3.785 7 N -0.483 5.483 8 C -0.053 4.053 9 C 0.124 3.876 10 N -0.502 5.502 11 C 0.037 3.963 12 C -0.115 4.115 13 C 0.240 3.760 14 O -0.587 6.587 15 C -0.561 4.561 16 H 0.049 0.951 17 C 0.031 3.969 18 N -0.910 5.910 19 Si 0.955 3.045 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.273 1.273 23 C 0.058 3.942 24 C -0.057 4.057 25 O -0.203 6.203 26 C -0.081 4.081 27 C -0.126 4.126 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.371 0.629 40 H 0.269 0.731 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.249 0.751 44 H 0.125 0.875 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 5.096 -15.355 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.113 4.113 5 C -0.050 4.050 6 C 0.011 3.989 7 N -0.213 5.213 8 C -0.176 4.176 9 C -0.005 4.005 10 N -0.224 5.224 11 C -0.091 4.091 12 C -0.154 4.154 13 C 0.200 3.800 14 O -0.394 6.394 15 C -0.599 4.599 16 H 0.067 0.933 17 C -0.170 4.170 18 N -0.549 5.549 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.199 1.199 23 C -0.070 4.070 24 C -0.129 4.129 25 O -0.089 6.089 26 C -0.100 4.100 27 C -0.143 4.143 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.219 0.781 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.265 0.735 44 H 0.143 0.857 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.661 4.398 -15.795 20.716 hybrid contribution -0.670 1.133 1.576 2.053 sum -13.331 5.531 -14.219 20.261 Atomic orbital electron populations 1.20919 0.88331 1.04177 1.03738 1.20545 0.98184 0.92523 0.95532 1.21290 0.92703 0.99404 1.00628 1.21390 0.95473 0.96516 0.97908 1.17513 0.83236 0.96159 1.08086 1.24281 0.93998 0.78929 1.01653 1.70496 1.02321 1.30064 1.18382 1.22892 0.94027 0.94489 1.06149 1.21060 0.90816 0.97282 0.91355 1.65096 1.43445 1.12319 1.01566 1.22889 0.94061 0.97124 0.94979 1.22653 0.99056 0.99667 0.94048 1.19561 0.80933 0.89588 0.89886 1.86123 1.33966 1.76955 1.42405 1.21847 1.42429 0.96913 0.98722 0.93266 1.25671 0.94906 0.96987 0.99429 1.69828 1.48313 1.17082 1.19717 0.85562 0.78179 0.79309 0.78924 1.19670 1.20470 1.19859 1.23137 1.00084 0.92258 0.91495 1.25602 0.85038 0.96423 1.05799 1.84461 1.17470 1.37085 1.69922 1.21231 0.95059 0.96576 0.97145 1.21276 0.92565 0.99545 1.00935 0.89368 0.90418 0.90097 0.82495 0.84739 0.88804 0.86233 0.92883 0.90930 0.95261 0.93524 0.78062 0.92188 0.90664 0.93256 0.73461 0.85667 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.00 71.24 0.71 -0.44 16 2 C -0.07 -1.15 5.89 -19.81 -0.12 -1.26 16 3 C -0.12 -2.21 9.68 22.23 0.22 -2.00 16 4 C -0.09 -2.21 9.72 22.53 0.22 -1.99 16 5 C -0.05 -1.42 5.87 -20.09 -0.12 -1.54 16 6 C 0.21 7.28 7.90 87.33 0.69 7.97 16 7 N -0.48 -17.41 9.60 -293.19 -2.82 -20.23 16 8 C -0.05 -1.75 4.60 41.36 0.19 -1.56 16 9 C 0.12 3.82 6.03 85.55 0.52 4.33 16 10 N -0.50 -19.84 5.54 -887.58 -4.91 -24.75 16 11 C 0.04 1.59 6.46 86.45 0.56 2.15 16 12 C -0.12 -5.84 5.26 31.47 0.17 -5.67 16 13 C 0.24 12.60 0.95 -10.33 -0.01 12.59 16 14 O -0.59 -32.29 13.09 -148.98 -1.95 -34.24 16 15 C -0.56 -31.62 8.15 25.60 0.21 -31.41 16 16 H 0.05 2.78 7.78 -2.91 -0.02 2.76 16 17 C 0.03 1.69 5.28 84.65 0.45 2.14 16 18 N -0.91 -50.75 11.00 21.44 0.24 -50.52 16 19 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.06 2.56 5.37 86.65 0.47 3.02 16 24 C -0.06 -1.68 10.51 66.97 0.70 -0.98 16 25 O -0.20 -6.53 10.52 -8.42 -0.09 -6.61 16 26 C -0.08 -2.14 9.69 22.52 0.22 -1.92 16 27 C -0.13 -2.51 9.68 22.23 0.22 -2.29 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.13 2.92 7.90 -2.91 -0.02 2.90 16 33 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 34 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 35 H 0.05 2.25 6.02 -2.39 -0.01 2.23 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.03 1.59 7.84 -2.39 -0.02 1.57 16 38 H 0.05 2.47 7.98 -2.38 -0.02 2.45 16 39 H 0.37 20.78 7.46 -74.06 -0.55 20.23 16 40 H 0.27 14.19 8.31 -92.71 -0.77 13.41 16 41 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.05 2.19 5.07 -2.39 -0.01 2.18 16 43 H 0.25 5.16 8.06 -2.91 -0.02 5.13 16 44 H 0.13 3.52 7.83 -2.91 -0.02 3.50 16 45 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -68.44 368.84 -1.77 -70.21 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.46 Total: 39.24 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.28 Total: -18.86 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -7.49 Total: -95.50 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.04 Total: -40.86 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.44 -1.77 -70.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.906 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds