Wall clock time and date at job start Tue Mar 31 2020 15:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34766 * 126.36327 * 2 1 4 4 C 1.34426 * 107.69386 * 179.97438 * 3 2 1 5 5 C 1.47830 * 125.73032 * 179.97438 * 4 3 2 6 6 C 1.39560 * 120.14622 * 179.74764 * 5 4 3 7 7 C 1.37963 * 119.85506 * 179.79029 * 6 5 4 8 8 C 1.38359 * 120.13927 * 0.46309 * 7 6 5 9 9 C 1.38351 * 120.29429 * 359.78592 * 8 7 6 10 10 C 1.37958 * 120.14363 * 359.97438 * 9 8 7 11 11 N 1.31222 * 108.54869 * 359.97438 * 4 3 2 12 12 C 1.34166 * 108.64440 * 359.77350 * 11 4 3 13 13 C 1.50699 * 126.07785 * 180.27088 * 12 11 4 14 14 N 1.46894 * 109.47288 * 270.11172 * 13 12 11 15 15 C 1.47901 * 110.99702 * 69.87644 * 14 13 12 16 16 C 1.53991 * 107.05725 * 214.15519 * 15 14 13 17 17 C 1.54593 * 105.14331 * 1.22544 * 16 15 14 18 18 O 1.42903 * 110.72613 * 263.42134 * 17 16 15 19 19 C 1.50696 * 110.72354 * 140.31381 * 17 16 15 20 20 H 1.07998 * 120.00724 * 2.72004 * 19 17 16 21 21 C 1.37879 * 119.99765 * 182.71928 * 19 17 16 22 22 N 1.31519 * 119.99832 * 185.19186 * 21 19 17 23 23 Si 1.86800 * 120.00284 * 5.19566 * 21 19 17 24 24 H 1.48498 * 109.47001 * 84.56207 * 23 21 19 25 25 H 1.48501 * 109.47222 * 204.56333 * 23 21 19 26 26 H 1.48502 * 109.46680 * 324.56318 * 23 21 19 27 27 C 1.48539 * 111.00113 * 312.48397 * 14 13 12 28 28 H 1.09001 * 109.47454 * 0.02968 * 1 2 3 29 29 H 1.09008 * 109.47173 * 120.03014 * 1 2 3 30 30 H 1.09004 * 109.47130 * 240.02564 * 1 2 3 31 31 H 1.08002 * 120.07872 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.93133 * 180.24958 * 7 6 5 33 33 H 1.08005 * 119.85054 * 179.76493 * 8 7 6 34 34 H 1.08002 * 119.92583 * 179.97438 * 9 8 7 35 35 H 1.08009 * 120.07076 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.47148 * 30.11977 * 13 12 11 37 37 H 1.09003 * 109.46289 * 150.11359 * 13 12 11 38 38 H 1.08996 * 109.92067 * 333.51028 * 15 14 13 39 39 H 1.09001 * 109.91736 * 94.80212 * 15 14 13 40 40 H 1.09003 * 110.31106 * 120.14309 * 16 15 14 41 41 H 1.09005 * 110.30773 * 242.21016 * 16 15 14 42 42 H 0.96692 * 113.99989 * 298.54497 * 18 17 16 43 43 H 0.97006 * 119.99867 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.66294 * 278.15249 * 27 14 13 45 45 H 1.08995 * 110.66810 * 41.28422 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0852 0.0000 4 6 3.5795 0.6549 0.0006 5 6 4.7816 1.5155 0.0002 6 6 6.0540 0.9422 0.0062 7 6 7.1717 1.7510 0.0015 8 6 7.0330 3.1276 0.0005 9 6 5.7745 3.7023 -0.0002 10 6 4.6488 2.9049 -0.0005 11 7 3.5768 -0.6573 0.0015 12 6 2.3046 -1.0835 0.0065 13 6 1.8501 -2.5203 0.0150 14 7 1.7019 -2.9952 -1.3672 15 6 3.0196 -3.1314 -2.0249 16 6 2.8233 -2.7699 -3.5089 17 6 1.3295 -2.3933 -3.6386 18 8 0.5649 -3.5090 -4.0997 19 6 1.1551 -1.2129 -4.5589 20 1 2.0129 -0.7838 -5.0555 21 6 -0.0996 -0.6806 -4.7672 22 7 -0.2676 0.2824 -5.6471 23 14 -1.5609 -1.3271 -3.7996 24 1 -1.6309 -0.6352 -2.4875 25 1 -2.8103 -1.0725 -4.5608 26 1 -1.4030 -2.7874 -3.5814 27 6 0.9394 -2.0188 -2.1867 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5143 -0.8898 30 1 -0.3633 -0.5135 0.8902 31 1 6.1636 -0.1322 0.0115 32 1 8.1569 1.3087 0.0020 33 1 7.9112 3.7564 0.0007 34 1 5.6732 4.7776 -0.0005 35 1 3.6668 3.3547 -0.0006 36 1 2.5892 -3.1321 0.5321 37 1 0.8922 -2.5952 0.5296 38 1 3.7353 -2.4481 -1.5678 39 1 3.3743 -4.1583 -1.9367 40 1 3.4521 -1.9211 -3.7779 41 1 3.0551 -3.6271 -4.1410 42 1 0.8246 -3.8293 -4.9743 43 1 -1.1505 0.6566 -5.7939 44 1 -0.1327 -2.1415 -2.0325 45 1 1.2480 -0.9991 -1.9562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:56 Heat of formation + Delta-G solvation = -3.553074 kcal Electronic energy + Delta-G solvation = -28913.241188 eV Core-core repulsion = 25089.826822 eV Total energy + Delta-G solvation = -3823.414366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.52087 -40.45453 -39.97417 -37.26043 -35.64166 -34.52300 -34.31309 -32.24276 -32.00714 -31.83958 -30.01068 -28.54203 -26.88261 -25.74642 -24.14600 -23.78392 -22.72276 -22.26697 -21.39653 -21.03958 -19.43103 -18.72716 -18.06462 -17.37835 -17.08540 -16.91813 -16.54024 -16.14116 -15.93194 -15.75911 -15.37057 -15.11882 -14.97088 -14.70043 -14.53214 -14.43559 -14.16878 -13.93293 -13.84248 -13.66295 -13.34600 -13.18826 -13.10550 -12.63583 -12.44543 -12.35504 -12.29813 -12.21437 -12.08816 -11.95651 -11.72485 -11.59968 -10.97843 -10.78865 -10.57002 -10.23583 -10.00449 -9.52105 -9.13938 -8.40234 -6.54678 -0.42296 0.36540 0.67860 1.27888 1.40035 1.47413 1.59700 1.66131 2.37066 2.74684 2.80916 2.95327 3.11565 3.56254 3.62262 3.67918 3.86882 3.90384 3.97363 4.03725 4.10755 4.18516 4.30189 4.32786 4.41359 4.42829 4.50497 4.54417 4.59790 4.66423 4.68960 4.77906 4.87462 4.91262 4.97924 5.03030 5.06334 5.12918 5.15173 5.37212 5.40513 5.43561 5.44866 5.47697 5.82681 5.90873 6.00809 6.06380 6.55024 6.55992 7.15437 7.32282 8.74404 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004218 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.507854 B = 6636.643530 C = 6899.619804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.037 4.037 3 O -0.207 6.207 4 C 0.209 3.791 5 C -0.043 4.043 6 C -0.086 4.086 7 C -0.119 4.119 8 C -0.095 4.095 9 C -0.119 4.119 10 C -0.106 4.106 11 N -0.472 5.472 12 C -0.051 4.051 13 C 0.124 3.876 14 N -0.499 5.499 15 C 0.041 3.959 16 C -0.142 4.142 17 C 0.218 3.782 18 O -0.569 6.569 19 C -0.556 4.556 20 H 0.028 0.972 21 C 0.037 3.963 22 N -0.937 5.937 23 Si 0.925 3.075 24 H -0.256 1.256 25 H -0.304 1.304 26 H -0.214 1.214 27 C 0.049 3.951 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.371 0.629 43 H 0.267 0.733 44 H 0.070 0.930 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 2.272 16.291 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 O -0.095 6.095 4 C 0.006 3.994 5 C -0.044 4.044 6 C -0.105 4.105 7 C -0.137 4.137 8 C -0.114 4.114 9 C -0.137 4.137 10 C -0.126 4.126 11 N -0.201 5.201 12 C -0.174 4.174 13 C -0.005 4.005 14 N -0.221 5.221 15 C -0.087 4.087 16 C -0.180 4.180 17 C 0.178 3.822 18 O -0.375 6.375 19 C -0.594 4.594 20 H 0.046 0.954 21 C -0.163 4.163 22 N -0.576 5.576 23 Si 0.750 3.250 24 H -0.181 1.181 25 H -0.232 1.232 26 H -0.137 1.137 27 C -0.078 4.078 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.177 0.823 33 H 0.182 0.818 34 H 0.175 0.825 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.216 1.573 16.831 19.751 hybrid contribution -0.758 1.449 -0.998 1.916 sum 9.459 3.022 15.832 18.689 Atomic orbital electron populations 1.20767 0.82395 1.05555 1.05273 1.23846 0.95901 0.83839 1.05486 1.84404 1.17849 1.36886 1.70340 1.24303 0.83320 0.89498 1.02284 1.17571 0.87527 0.91801 1.07477 1.21282 0.90504 1.01150 0.97552 1.21480 0.98809 0.94031 0.99354 1.21813 0.98439 0.95164 0.95945 1.21438 0.91598 1.01294 0.99378 1.21404 1.00797 0.91559 0.98813 1.70470 1.22898 1.08610 1.18128 1.22618 0.88055 0.99558 1.07166 1.21062 1.02885 0.84920 0.91647 1.65178 1.13981 1.41574 1.01403 1.22851 0.90796 1.01847 0.93181 1.22920 0.97876 1.00329 0.96904 1.19741 0.87723 0.84088 0.90658 1.86473 1.62515 1.50157 1.38400 1.21609 0.93961 1.15402 1.28397 0.95387 1.25800 1.01995 0.93720 0.94786 1.70084 1.24453 1.28087 1.34932 0.86318 0.76837 0.83011 0.78844 1.18118 1.23173 1.13653 1.23532 0.97866 0.93917 0.92503 0.89350 0.90320 0.85582 0.85278 0.82258 0.81823 0.82499 0.85727 0.87740 0.86853 0.93208 0.88882 0.94000 0.90218 0.78126 0.92376 0.91174 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.42 9.65 71.24 0.69 -1.73 16 2 C -0.04 -1.29 5.90 24.84 0.15 -1.14 16 3 O -0.21 -7.69 10.52 -8.26 -0.09 -7.78 16 4 C 0.21 7.50 7.90 87.32 0.69 8.19 16 5 C -0.04 -1.27 5.87 -20.10 -0.12 -1.38 16 6 C -0.09 -2.15 9.69 22.52 0.22 -1.93 16 7 C -0.12 -2.11 10.03 22.23 0.22 -1.88 16 8 C -0.10 -1.44 10.04 22.33 0.22 -1.21 16 9 C -0.12 -2.14 10.03 22.23 0.22 -1.92 16 10 C -0.11 -2.67 9.72 22.52 0.22 -2.45 16 11 N -0.47 -17.25 9.83 -293.18 -2.88 -20.13 16 12 C -0.05 -1.80 4.72 41.36 0.20 -1.60 16 13 C 0.12 3.80 5.82 85.56 0.50 4.30 16 14 N -0.50 -18.43 5.54 -887.59 -4.91 -23.34 16 15 C 0.04 1.50 6.46 86.45 0.56 2.06 16 16 C -0.14 -5.97 6.25 31.47 0.20 -5.77 16 17 C 0.22 10.38 0.78 -10.34 -0.01 10.37 16 18 O -0.57 -25.76 10.34 -148.98 -1.54 -27.30 16 19 C -0.56 -32.15 8.82 25.60 0.23 -31.93 16 20 H 0.03 1.82 7.81 -2.91 -0.02 1.80 16 21 C 0.04 2.17 5.47 84.65 0.46 2.63 16 22 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 23 Si 0.93 44.36 23.93 68.60 1.64 46.01 16 24 H -0.26 -11.07 5.74 99.48 0.57 -10.50 16 25 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 26 H -0.21 -10.00 5.47 99.48 0.54 -9.45 16 27 C 0.05 2.14 2.82 86.65 0.24 2.38 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.67 4.11 -2.38 -0.01 2.66 16 30 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.13 3.33 7.83 -2.91 -0.02 3.31 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.12 3.11 7.90 -2.91 -0.02 3.09 16 36 H 0.10 2.86 8.08 -2.39 -0.02 2.84 16 37 H 0.11 2.91 7.89 -2.39 -0.02 2.89 16 38 H 0.05 1.88 6.19 -2.39 -0.01 1.87 16 39 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.04 1.92 7.68 -2.39 -0.02 1.90 16 41 H 0.08 2.99 8.08 -2.38 -0.02 2.97 16 42 H 0.37 14.76 9.09 -74.06 -0.67 14.08 16 43 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 44 H 0.07 3.06 4.18 -2.39 -0.01 3.05 16 45 H 0.05 2.22 4.39 -2.39 -0.01 2.21 16 Total: -1.00 -75.04 352.55 -2.54 -77.57 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.06 Total: 36.38 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 4.89 Total: -23.02 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -7.50 Total: -101.85 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.63 Total: -35.08 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.64 Total: 46.01 kcal Total: -75.04 -2.54 -77.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.021 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds