Wall clock time and date at job start Tue Mar 31 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37979 * 120.07131 * 2 1 4 4 C 1.38342 * 120.14046 * 180.32381 * 3 2 1 5 5 C 1.38373 * 120.29326 * 359.67082 * 4 3 2 6 6 C 1.37945 * 120.14454 * 0.02653 * 5 4 3 7 7 C 1.39547 * 120.07309 * 179.72081 * 2 1 3 8 8 C 1.47834 * 120.14558 * 359.97438 * 7 2 1 9 9 C 1.35771 * 126.57945 * 309.67055 * 8 7 2 10 10 N 1.34141 * 107.51299 * 180.02562 * 9 8 7 11 11 C 1.30364 * 108.90197 * 0.02562 * 10 9 8 12 12 C 1.50696 * 125.47984 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46966 * 90.02863 * 12 11 10 14 14 C 1.47438 * 111.00162 * 69.87497 * 13 12 11 15 15 C 1.54309 * 107.23465 * 123.25651 * 14 13 12 16 16 C 1.55137 * 103.02013 * 22.28674 * 15 14 13 17 17 O 1.42893 * 110.99463 * 82.47621 * 16 15 14 18 18 C 1.50706 * 110.99230 * 206.25544 * 16 15 14 19 19 H 1.07998 * 120.00029 * 118.53589 * 18 16 15 20 20 C 1.37875 * 119.99630 * 298.54674 * 18 16 15 21 21 N 1.31518 * 120.00628 * 359.97438 * 20 18 16 22 22 Si 1.86809 * 119.99865 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46926 * 59.99616 * 22 20 18 24 24 H 1.48498 * 109.46878 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47204 * 299.99683 * 22 20 18 26 26 C 1.47851 * 110.99766 * 190.71823 * 13 12 11 27 27 O 1.33991 * 109.03521 * 359.97438 * 11 10 9 28 28 H 1.08999 * 109.46778 * 270.28134 * 1 2 3 29 29 H 1.09002 * 109.47402 * 30.28081 * 1 2 3 30 30 H 1.09003 * 109.46973 * 150.27954 * 1 2 3 31 31 H 1.08001 * 119.92812 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.84788 * 179.69675 * 4 3 2 33 33 H 1.08000 * 119.92707 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.07166 * 179.97438 * 6 5 4 35 35 H 1.07999 * 126.24713 * 0.06937 * 9 8 7 36 36 H 1.08997 * 109.47413 * 210.02378 * 12 11 10 37 37 H 1.09001 * 109.47594 * 330.02976 * 12 11 10 38 38 H 1.09007 * 109.88633 * 242.66631 * 14 13 12 39 39 H 1.08997 * 109.88813 * 3.85016 * 14 13 12 40 40 H 1.09004 * 110.70545 * 140.66544 * 15 14 13 41 41 H 1.09004 * 110.70831 * 263.72322 * 15 14 13 42 42 H 0.96701 * 114.00141 * 61.45425 * 17 16 15 43 43 H 0.96998 * 120.00443 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.37367 * 332.46187 * 26 13 12 45 45 H 1.08997 * 110.37618 * 94.80480 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5819 1.1958 -0.0068 5 6 4.2813 0.0018 -0.0067 6 6 3.6022 -1.1989 -0.0004 7 6 2.2064 -1.2076 0.0059 8 6 1.4721 -2.4907 0.0127 9 6 0.4664 -2.8429 0.8541 10 7 0.0798 -4.0842 0.5237 11 6 0.8041 -4.4997 -0.4774 12 6 0.6831 -5.8450 -1.1455 13 7 -0.2813 -5.7581 -2.2503 14 6 0.2585 -4.9522 -3.3607 15 6 0.2278 -5.8369 -4.6247 16 6 -0.8518 -6.8973 -4.2830 17 8 -2.1641 -6.3923 -4.5375 18 6 -0.6119 -8.1763 -5.0430 19 1 -0.4183 -9.0942 -4.5080 20 6 -0.6394 -8.1745 -6.4215 21 7 -0.8754 -7.0567 -7.0732 22 14 -0.3413 -9.7597 -7.3638 23 1 -1.3705 -10.7612 -6.9857 24 1 -0.4241 -9.4918 -8.8220 25 1 1.0070 -10.2864 -7.0326 26 6 -0.6198 -7.1021 -2.7651 27 8 1.6735 -3.5382 -0.8165 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6584 2.1294 -0.0004 32 1 4.1182 2.1331 -0.0117 33 1 5.3613 0.0100 -0.0116 34 1 4.1493 -2.1300 -0.0008 35 1 0.0527 -2.2346 1.6448 36 1 1.6556 -6.1461 -1.5351 37 1 0.3386 -6.5816 -0.4197 38 1 -0.3603 -4.0677 -3.5120 39 1 1.2841 -4.6566 -3.1399 40 1 -0.0678 -5.2532 -5.4965 41 1 1.1967 -6.3084 -4.7889 42 1 -2.3230 -6.1582 -5.4621 43 1 -0.8951 -7.0555 -8.0430 44 1 0.2072 -7.7921 -2.5973 45 1 -1.5274 -7.4733 -2.2892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:22 Heat of formation + Delta-G solvation = 4.753007 kcal Electronic energy + Delta-G solvation = -27489.578576 eV Core-core repulsion = 23666.524388 eV Total energy + Delta-G solvation = -3823.054187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.21733 -39.52571 -38.44517 -34.98635 -34.66423 -33.42383 -32.28159 -32.14899 -30.78761 -28.60929 -28.11160 -27.26881 -25.93880 -24.17936 -23.00858 -22.50566 -21.48002 -20.86979 -19.98253 -19.60840 -17.57412 -17.12069 -16.70102 -16.36380 -15.60142 -15.43084 -15.22708 -14.90120 -14.57417 -14.20442 -14.18422 -13.95704 -13.79486 -13.51789 -13.22484 -12.70513 -12.58858 -12.51115 -12.28716 -12.19034 -11.65734 -11.58414 -11.41330 -11.33113 -11.28059 -11.20812 -11.03857 -10.78763 -10.49095 -10.47191 -10.33011 -9.89903 -9.54660 -9.23723 -9.04709 -8.62337 -8.34354 -8.10150 -7.76987 -6.22802 -4.31526 0.65324 1.06653 1.61866 2.65424 2.75877 3.22581 3.27885 3.30531 3.46865 4.06701 4.28248 4.49993 4.53506 4.59096 4.66152 4.73160 4.95780 5.03008 5.05358 5.14559 5.34643 5.38583 5.40534 5.49271 5.52944 5.62735 5.65649 5.78978 5.84854 5.88201 5.93422 6.02257 6.10721 6.15893 6.19428 6.28294 6.33980 6.40637 6.60780 6.62212 6.81512 7.01804 7.35181 7.44809 7.50274 7.55420 7.79339 7.84989 8.12456 8.70537 9.37162 9.50102 10.84118 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.002563 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.474374 B =10920.818513 C =11258.727337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.055 4.055 3 C -0.120 4.120 4 C -0.107 4.107 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.015 4.015 8 C -0.021 4.021 9 C -0.015 4.015 10 N -0.471 5.471 11 C 0.221 3.779 12 C 0.141 3.859 13 N -0.520 5.520 14 C 0.040 3.960 15 C -0.143 4.143 16 C 0.253 3.747 17 O -0.578 6.578 18 C -0.537 4.537 19 H 0.062 0.938 20 C 0.072 3.928 21 N -0.894 5.894 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.060 3.940 27 O -0.192 6.192 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.182 0.818 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.377 0.623 43 H 0.267 0.733 44 H 0.052 0.948 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 14.693 13.803 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.125 4.125 5 C -0.144 4.144 6 C -0.109 4.109 7 C -0.016 4.016 8 C -0.074 4.074 9 C -0.155 4.155 10 N -0.200 5.200 11 C 0.015 3.985 12 C 0.012 3.988 13 N -0.246 5.246 14 C -0.087 4.087 15 C -0.182 4.182 16 C 0.213 3.787 17 O -0.386 6.386 18 C -0.576 4.576 19 H 0.080 0.920 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.728 3.272 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.066 4.066 27 O -0.079 6.079 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.199 0.801 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.227 0.773 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.697 14.515 14.703 22.048 hybrid contribution 1.638 -0.558 -1.805 2.501 sum 9.336 13.957 12.897 21.173 Atomic orbital electron populations 1.20961 0.90512 1.03702 1.02783 1.19932 0.96404 0.91506 0.97726 1.20961 0.94249 0.97202 1.01420 1.21275 0.94250 0.98234 0.98737 1.21071 1.00136 0.92073 1.01134 1.21290 0.92796 0.98751 0.98069 1.17476 0.92217 0.87580 1.04285 1.21272 1.01725 0.89094 0.95346 1.23337 0.96840 0.93479 1.01835 1.70392 1.24807 1.11062 1.13697 1.26362 0.86392 0.92540 0.93219 1.20680 0.96985 0.85772 0.95336 1.63630 1.37914 1.15240 1.07816 1.22927 0.96718 0.97354 0.91713 1.23265 1.00896 0.98210 0.95841 1.19507 0.80471 0.90468 0.88268 1.86150 1.33260 1.86465 1.32696 1.21483 1.49611 0.94961 0.91515 0.92023 1.25002 0.93800 0.96628 0.97634 1.69728 1.49071 1.26024 1.08494 0.86524 0.78861 0.83319 0.78518 1.20005 1.21167 1.20185 1.23045 0.99721 0.86963 0.96862 1.84507 1.51363 1.22551 1.49498 0.90585 0.91035 0.90824 0.85362 0.85680 0.85545 0.85616 0.80102 0.91968 0.86841 0.91697 0.94273 0.90287 0.92423 0.77348 0.92285 0.92940 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.78 36.01 0.32 -0.83 16 2 C -0.06 -0.58 5.91 -104.23 -0.62 -1.19 16 3 C -0.12 -1.03 9.69 -39.64 -0.38 -1.41 16 4 C -0.11 -0.85 10.04 -39.49 -0.40 -1.24 16 5 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 6 C -0.09 -0.97 9.79 -39.18 -0.38 -1.36 16 7 C -0.01 -0.18 5.80 -104.98 -0.61 -0.79 16 8 C -0.02 -0.30 5.95 -36.54 -0.22 -0.52 16 9 C -0.01 -0.20 10.12 -17.43 -0.18 -0.38 16 10 N -0.47 -7.87 11.27 -10.82 -0.12 -7.99 16 11 C 0.22 3.69 7.24 -12.90 -0.09 3.59 16 12 C 0.14 2.30 5.17 -4.97 -0.03 2.27 16 13 N -0.52 -10.25 5.15 -232.69 -1.20 -11.45 16 14 C 0.04 0.82 6.41 -2.84 -0.02 0.80 16 15 C -0.14 -3.28 5.37 -24.92 -0.13 -3.42 16 16 C 0.25 6.21 0.87 -89.63 -0.08 6.14 16 17 O -0.58 -15.13 13.16 -35.23 -0.46 -15.60 16 18 C -0.54 -14.12 8.27 -34.44 -0.28 -14.40 16 19 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 20 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 21 N -0.89 -23.65 10.75 55.43 0.60 -23.06 16 22 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.06 1.28 5.86 -2.29 -0.01 1.27 16 27 O -0.19 -3.14 10.42 4.26 0.04 -3.09 16 28 H 0.08 0.58 8.02 -51.93 -0.42 0.17 16 29 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.85 6.52 -51.93 -0.34 0.51 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.18 1.98 7.76 -52.49 -0.41 1.57 16 36 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 37 H 0.11 1.65 8.07 -51.93 -0.42 1.23 16 38 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 39 H 0.04 0.74 6.98 -51.93 -0.36 0.37 16 40 H 0.08 1.94 7.54 -51.93 -0.39 1.54 16 41 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 42 H 0.38 9.93 7.56 45.56 0.34 10.27 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 44 H 0.05 1.03 7.70 -51.93 -0.40 0.63 16 45 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -29.59 371.04 -9.90 -39.49 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.72 Total: 11.90 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.61 Total: -11.17 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.72 Total: -42.50 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.42 Total: -18.69 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.59 -9.90 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.245 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds