Wall clock time and date at job start Tue Mar 31 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37979 * 120.07131 * 2 1 4 4 C 1.38342 * 120.14046 * 180.32381 * 3 2 1 5 5 C 1.38373 * 120.29326 * 359.67082 * 4 3 2 6 6 C 1.37945 * 120.14454 * 0.02653 * 5 4 3 7 7 C 1.39547 * 120.07309 * 179.72081 * 2 1 3 8 8 C 1.47834 * 120.14558 * 359.97438 * 7 2 1 9 9 C 1.35771 * 126.57945 * 309.67055 * 8 7 2 10 10 N 1.34141 * 107.51299 * 180.02562 * 9 8 7 11 11 C 1.30364 * 108.90197 * 0.02562 * 10 9 8 12 12 C 1.50696 * 125.47984 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46966 * 90.02863 * 12 11 10 14 14 C 1.47438 * 111.00162 * 69.87497 * 13 12 11 15 15 C 1.54309 * 107.23465 * 123.25651 * 14 13 12 16 16 C 1.55137 * 103.02013 * 22.28674 * 15 14 13 17 17 O 1.42893 * 110.99463 * 82.47621 * 16 15 14 18 18 C 1.50706 * 110.99230 * 206.25544 * 16 15 14 19 19 H 1.07998 * 120.00029 * 118.53589 * 18 16 15 20 20 C 1.37875 * 119.99630 * 298.54674 * 18 16 15 21 21 N 1.31518 * 120.00628 * 359.97438 * 20 18 16 22 22 Si 1.86809 * 119.99865 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46926 * 59.99616 * 22 20 18 24 24 H 1.48498 * 109.46878 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47204 * 299.99683 * 22 20 18 26 26 C 1.47851 * 110.99766 * 190.71823 * 13 12 11 27 27 O 1.33991 * 109.03521 * 359.97438 * 11 10 9 28 28 H 1.08999 * 109.46778 * 270.28134 * 1 2 3 29 29 H 1.09002 * 109.47402 * 30.28081 * 1 2 3 30 30 H 1.09003 * 109.46973 * 150.27954 * 1 2 3 31 31 H 1.08001 * 119.92812 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.84788 * 179.69675 * 4 3 2 33 33 H 1.08000 * 119.92707 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.07166 * 179.97438 * 6 5 4 35 35 H 1.07999 * 126.24713 * 0.06937 * 9 8 7 36 36 H 1.08997 * 109.47413 * 210.02378 * 12 11 10 37 37 H 1.09001 * 109.47594 * 330.02976 * 12 11 10 38 38 H 1.09007 * 109.88633 * 242.66631 * 14 13 12 39 39 H 1.08997 * 109.88813 * 3.85016 * 14 13 12 40 40 H 1.09004 * 110.70545 * 140.66544 * 15 14 13 41 41 H 1.09004 * 110.70831 * 263.72322 * 15 14 13 42 42 H 0.96701 * 114.00141 * 61.45425 * 17 16 15 43 43 H 0.96998 * 120.00443 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.37367 * 332.46187 * 26 13 12 45 45 H 1.08997 * 110.37618 * 94.80480 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5819 1.1958 -0.0068 5 6 4.2813 0.0018 -0.0067 6 6 3.6022 -1.1989 -0.0004 7 6 2.2064 -1.2076 0.0059 8 6 1.4721 -2.4907 0.0127 9 6 0.4664 -2.8429 0.8541 10 7 0.0798 -4.0842 0.5237 11 6 0.8041 -4.4997 -0.4774 12 6 0.6831 -5.8450 -1.1455 13 7 -0.2813 -5.7581 -2.2503 14 6 0.2585 -4.9522 -3.3607 15 6 0.2278 -5.8369 -4.6247 16 6 -0.8518 -6.8973 -4.2830 17 8 -2.1641 -6.3923 -4.5375 18 6 -0.6119 -8.1763 -5.0430 19 1 -0.4183 -9.0942 -4.5080 20 6 -0.6394 -8.1745 -6.4215 21 7 -0.8754 -7.0567 -7.0732 22 14 -0.3413 -9.7597 -7.3638 23 1 -1.3705 -10.7612 -6.9857 24 1 -0.4241 -9.4918 -8.8220 25 1 1.0070 -10.2864 -7.0326 26 6 -0.6198 -7.1021 -2.7651 27 8 1.6735 -3.5382 -0.8165 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6584 2.1294 -0.0004 32 1 4.1182 2.1331 -0.0117 33 1 5.3613 0.0100 -0.0116 34 1 4.1493 -2.1300 -0.0008 35 1 0.0527 -2.2346 1.6448 36 1 1.6556 -6.1461 -1.5351 37 1 0.3386 -6.5816 -0.4197 38 1 -0.3603 -4.0677 -3.5120 39 1 1.2841 -4.6566 -3.1399 40 1 -0.0678 -5.2532 -5.4965 41 1 1.1967 -6.3084 -4.7889 42 1 -2.3230 -6.1582 -5.4621 43 1 -0.8951 -7.0555 -8.0430 44 1 0.2072 -7.7921 -2.5973 45 1 -1.5274 -7.4733 -2.2892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:22 Heat of formation + Delta-G solvation = -16.203139 kcal Electronic energy + Delta-G solvation = -27490.487302 eV Core-core repulsion = 23666.524388 eV Total energy + Delta-G solvation = -3823.962914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.37905 -40.30676 -40.09881 -36.75166 -35.87596 -34.26283 -34.17664 -33.18232 -32.17791 -30.06383 -29.72294 -28.08094 -27.34126 -25.88995 -23.99596 -23.53927 -22.53548 -21.82481 -21.52299 -21.46006 -19.08200 -18.46760 -17.91315 -17.40708 -17.03488 -16.86241 -16.41262 -16.23290 -16.05808 -15.75770 -15.40037 -14.99778 -14.69146 -14.44754 -14.34654 -14.20675 -14.01794 -13.89359 -13.40660 -13.25567 -13.15187 -12.99577 -12.95335 -12.85545 -12.60025 -12.45704 -12.28237 -12.27217 -12.18301 -12.08363 -11.75838 -11.64911 -11.13936 -10.61420 -10.41460 -10.10029 -9.75637 -9.39512 -9.24198 -8.20850 -6.36911 -0.21497 0.37198 0.57448 1.42844 1.44470 1.51563 1.57869 1.59929 2.38942 2.73938 2.90693 3.02502 3.15882 3.56580 3.81525 3.86278 3.91042 3.94150 4.00452 4.10197 4.15843 4.25265 4.34879 4.35867 4.40905 4.46736 4.59274 4.66917 4.71756 4.72916 4.79330 4.84897 4.87948 5.00034 5.02538 5.18840 5.20690 5.22508 5.43733 5.44074 5.50448 5.52433 5.54074 5.76105 5.84655 5.95790 6.02175 6.17918 6.67052 6.68970 7.34416 7.44273 8.84400 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.002563 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.474374 B =10920.818513 C =11258.727337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.128 4.128 6 C -0.105 4.105 7 C -0.047 4.047 8 C -0.013 4.013 9 C -0.024 4.024 10 N -0.488 5.488 11 C 0.201 3.799 12 C 0.144 3.856 13 N -0.530 5.530 14 C 0.055 3.945 15 C -0.132 4.132 16 C 0.235 3.765 17 O -0.589 6.589 18 C -0.559 4.559 19 H 0.061 0.939 20 C 0.030 3.970 21 N -0.912 5.912 22 Si 0.961 3.039 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.069 3.931 27 O -0.207 6.207 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.207 0.793 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.372 0.628 43 H 0.268 0.732 44 H 0.068 0.932 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.040 16.096 14.784 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.118 4.118 5 C -0.146 4.146 6 C -0.124 4.124 7 C -0.048 4.048 8 C -0.066 4.066 9 C -0.164 4.164 10 N -0.217 5.217 11 C -0.005 4.005 12 C 0.015 3.985 13 N -0.256 5.256 14 C -0.072 4.072 15 C -0.172 4.172 16 C 0.195 3.805 17 O -0.396 6.396 18 C -0.597 4.597 19 H 0.079 0.921 20 C -0.171 4.171 21 N -0.551 5.551 22 Si 0.786 3.214 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.057 4.057 27 O -0.094 6.094 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.224 0.776 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.220 0.780 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.079 15.922 15.701 24.134 hybrid contribution 1.252 -0.845 -2.070 2.562 sum 10.331 15.077 13.631 22.801 Atomic orbital electron populations 1.20959 0.90133 1.03033 1.03627 1.20133 0.96891 0.91624 0.97799 1.21315 0.94824 0.97424 1.00372 1.21708 0.94229 0.99231 0.96598 1.21391 1.01439 0.91546 1.00213 1.21416 0.92459 0.99739 0.98753 1.17667 0.92931 0.87142 1.07052 1.21809 1.01418 0.89155 0.94245 1.23716 0.97144 0.92906 1.02585 1.70351 1.25101 1.12340 1.13943 1.26293 0.87264 0.92947 0.94006 1.20732 0.96926 0.86395 0.94419 1.63506 1.39655 1.14284 1.08106 1.22710 0.97309 0.96401 0.90812 1.23059 0.99939 0.97951 0.96223 1.19789 0.79978 0.90349 0.90400 1.86146 1.34594 1.86613 1.32250 1.21773 1.50124 0.95631 0.92213 0.92106 1.25712 0.93556 0.99429 0.98422 1.69829 1.49224 1.27455 1.08609 0.85578 0.78813 0.79799 0.77209 1.19945 1.20898 1.19524 1.22904 1.00191 0.88083 0.94564 1.84486 1.51545 1.23183 1.50163 0.89029 0.89431 0.93632 0.82742 0.82509 0.83202 0.85987 0.77637 0.90450 0.85185 0.92972 0.92790 0.92510 0.93020 0.78001 0.92272 0.91338 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.78 71.24 0.63 -1.48 16 2 C -0.06 -1.24 5.91 -19.61 -0.12 -1.35 16 3 C -0.12 -1.71 9.69 22.23 0.22 -1.50 16 4 C -0.10 -1.24 10.04 22.33 0.22 -1.02 16 5 C -0.13 -1.91 10.03 22.23 0.22 -1.68 16 6 C -0.11 -2.17 9.79 22.53 0.22 -1.95 16 7 C -0.05 -1.12 5.80 -20.10 -0.12 -1.23 16 8 C -0.01 -0.38 5.95 24.24 0.14 -0.24 16 9 C -0.02 -0.66 10.12 83.77 0.85 0.18 16 10 N -0.49 -16.28 11.27 -302.87 -3.41 -19.69 16 11 C 0.20 6.69 7.24 88.33 0.64 7.32 16 12 C 0.14 4.58 5.17 85.55 0.44 5.02 16 13 N -0.53 -20.81 5.15 -890.10 -4.58 -25.39 16 14 C 0.06 2.27 6.41 86.64 0.56 2.82 16 15 C -0.13 -6.20 5.37 31.77 0.17 -6.03 16 16 C 0.23 11.68 0.87 -10.15 -0.01 11.67 16 17 O -0.59 -31.60 13.16 -148.98 -1.96 -33.56 16 18 C -0.56 -29.57 8.27 25.60 0.21 -29.36 16 19 H 0.06 3.14 7.79 -2.91 -0.02 3.12 16 20 C 0.03 1.55 5.29 84.65 0.45 2.00 16 21 N -0.91 -48.89 10.75 21.45 0.23 -48.66 16 22 Si 0.96 41.74 29.54 68.60 2.03 43.77 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.07 2.93 5.86 86.77 0.51 3.44 16 27 O -0.21 -6.79 10.42 -7.66 -0.08 -6.87 16 28 H 0.09 1.25 8.02 -2.39 -0.02 1.23 16 29 H 0.09 1.19 8.09 -2.39 -0.02 1.17 16 30 H 0.04 1.05 6.52 -2.39 -0.02 1.03 16 31 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 32 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.21 4.34 7.76 -2.91 -0.02 4.32 16 36 H 0.08 2.23 7.96 -2.39 -0.02 2.21 16 37 H 0.13 3.66 8.07 -2.39 -0.02 3.64 16 38 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.05 2.03 6.98 -2.39 -0.02 2.01 16 40 H 0.06 2.87 7.54 -2.39 -0.02 2.85 16 41 H 0.05 2.43 8.04 -2.38 -0.02 2.41 16 42 H 0.37 20.26 7.56 -74.06 -0.56 19.70 16 43 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 44 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 45 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -64.17 371.04 -2.10 -66.27 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: 0.45 Total: 37.52 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 5.24 Total: -13.37 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -7.77 Total: -93.74 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -2.04 Total: -40.43 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -64.17 -2.10 -66.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.066 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds