Wall clock time and date at job start Tue Mar 31 2020 15:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36900 * 125.05928 * 2 1 4 4 H 0.96995 * 125.01645 * 359.97438 * 3 2 1 5 5 C 1.37125 * 109.96967 * 180.02562 * 3 2 1 6 6 C 1.40636 * 107.25740 * 0.24028 * 5 3 2 7 7 C 1.39536 * 120.04354 * 180.34755 * 6 5 3 8 8 C 1.37913 * 119.99108 * 359.75560 * 7 6 5 9 9 C 1.38323 * 120.59347 * 359.97438 * 8 7 6 10 10 C 1.39353 * 120.49342 * 359.97438 * 9 8 7 11 11 C 1.47507 * 120.20801 * 180.02562 * 10 9 8 12 12 O 1.21595 * 119.99841 * 219.17829 * 11 10 9 13 13 N 1.34772 * 119.99616 * 39.18215 * 11 10 9 14 14 C 1.47418 * 125.65416 * 355.40285 * 13 11 10 15 15 C 1.54909 * 104.83581 * 155.83825 * 14 13 11 16 16 C 1.55158 * 101.61435 * 36.99086 * 15 14 13 17 17 O 1.42902 * 110.72115 * 82.88017 * 16 15 14 18 18 C 1.50700 * 110.72030 * 206.15370 * 16 15 14 19 19 H 1.08005 * 119.99967 * 119.76210 * 18 16 15 20 20 C 1.37874 * 120.00083 * 299.75650 * 18 16 15 21 21 N 1.31516 * 120.00160 * 182.65061 * 20 18 16 22 22 Si 1.86796 * 120.00238 * 2.65579 * 20 18 16 23 23 H 1.48495 * 109.47449 * 85.62380 * 22 20 18 24 24 H 1.48494 * 109.47545 * 205.63021 * 22 20 18 25 25 H 1.48511 * 109.46969 * 325.62796 * 22 20 18 26 26 C 1.47025 * 125.64528 * 175.36840 * 13 11 10 27 27 C 1.34220 * 125.05580 * 180.68221 * 2 1 3 28 28 C 1.50699 * 126.55359 * 359.34528 * 27 2 1 29 29 H 1.09003 * 109.46766 * 90.02144 * 1 2 3 30 30 H 1.08995 * 109.47346 * 210.02495 * 1 2 3 31 31 H 1.09001 * 109.46922 * 330.02423 * 1 2 3 32 32 H 1.08004 * 120.01002 * 179.72518 * 7 6 5 33 33 H 1.07997 * 119.70746 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.75336 * 180.02562 * 9 8 7 35 35 H 1.09004 * 110.36766 * 37.00034 * 14 13 11 36 36 H 1.09004 * 110.36857 * 274.67874 * 14 13 11 37 37 H 1.09002 * 111.00895 * 155.08364 * 15 14 13 38 38 H 1.09001 * 111.00617 * 278.90033 * 15 14 13 39 39 H 0.96703 * 114.00448 * 179.97438 * 17 16 15 40 40 H 0.96996 * 120.00351 * 180.02562 * 21 20 18 41 41 H 1.09006 * 109.87911 * 300.50810 * 26 13 11 42 42 H 1.08995 * 109.88294 * 61.51772 * 26 13 11 43 43 H 1.09007 * 109.46833 * 270.87494 * 28 27 2 44 44 H 1.09000 * 109.47305 * 30.87464 * 28 27 2 45 45 H 1.08998 * 109.47317 * 150.88322 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2935 1.1206 0.0000 4 1 1.9629 2.0325 -0.0004 5 6 3.6174 0.7636 -0.0006 6 6 3.6706 -0.6417 -0.0066 7 6 4.9040 -1.2942 -0.0012 8 6 6.0719 -0.5606 0.0050 9 6 6.0348 0.8221 0.0053 10 6 4.8155 1.4967 -0.0011 11 6 4.7832 2.9714 -0.0012 12 8 3.9503 3.5614 0.6596 13 7 5.6769 3.6648 -0.7340 14 6 6.7941 3.0846 -1.5010 15 6 7.1035 4.1288 -2.6026 16 6 6.8750 5.4619 -1.8424 17 8 8.0363 5.8209 -1.0909 18 6 6.4957 6.5630 -2.7989 19 1 5.5467 7.0675 -2.6926 20 6 7.3603 6.9263 -3.8096 21 7 7.0525 7.9217 -4.6121 22 14 8.9687 6.0046 -4.0393 23 1 8.7355 4.8042 -4.8818 24 1 9.9570 6.8915 -4.7040 25 1 9.4925 5.5852 -2.7144 26 6 5.6986 5.1254 -0.9013 27 6 2.2780 -1.0986 -0.0131 28 6 1.8026 -2.5287 -0.0163 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.9442 -2.3735 -0.0013 33 1 7.0240 -1.0703 0.0096 34 1 6.9576 1.3830 0.0098 35 1 6.4947 2.1373 -1.9496 36 1 7.6627 2.9429 -0.8578 37 1 8.1359 4.0446 -2.9420 38 1 6.4106 4.0320 -3.4384 39 1 7.9454 6.6475 -0.5973 40 1 7.6605 8.1771 -5.3234 41 1 4.7616 5.4615 -1.3454 42 1 5.8442 5.6071 0.0655 43 1 1.6827 -2.8740 1.0107 44 1 0.8461 -2.5925 -0.5351 45 1 2.5352 -3.1540 -0.5265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:19 Heat of formation + Delta-G solvation = -44.260339 kcal Electronic energy + Delta-G solvation = -28133.142483 eV Core-core repulsion = 24307.962918 eV Total energy + Delta-G solvation = -3825.179565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.52788 -41.12865 -39.18081 -37.93736 -36.24265 -34.54726 -34.15864 -32.48886 -31.81078 -31.13854 -29.96219 -28.72794 -27.32932 -26.80864 -24.72160 -23.53723 -22.56257 -21.68047 -21.00059 -19.92730 -19.43587 -18.45136 -18.33524 -17.32418 -16.93980 -16.77269 -16.59086 -16.12758 -15.92490 -15.81200 -15.19715 -15.02756 -14.81811 -14.73206 -14.17858 -14.07746 -13.97853 -13.79015 -13.65749 -13.58985 -13.31319 -13.19769 -13.16292 -12.92789 -12.81240 -12.55400 -12.43947 -12.31625 -12.17798 -12.01560 -11.79458 -11.06679 -10.98920 -10.82803 -10.49779 -10.39410 -9.78555 -9.16793 -8.54661 -8.39539 -6.56692 -0.23808 0.61656 1.37134 1.38531 1.45961 1.66885 1.74779 1.95340 2.14287 2.37415 2.86585 2.96041 3.32097 3.52171 3.65181 3.77101 3.91499 3.96946 4.04516 4.18075 4.22288 4.29762 4.35883 4.39745 4.46352 4.51703 4.68673 4.70544 4.74500 4.84211 4.89751 4.94487 4.99954 5.01221 5.03657 5.06186 5.17308 5.23998 5.37931 5.41751 5.45522 5.55073 5.75373 5.89301 6.01956 6.14705 6.39080 6.53200 6.54232 6.93907 7.08134 7.24454 8.74780 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.003215 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.256103 B = 8708.070930 C = 9224.326174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.062 3.938 3 N -0.593 5.593 4 H 0.414 0.586 5 C 0.118 3.882 6 C -0.128 4.128 7 C -0.042 4.042 8 C -0.151 4.151 9 C -0.065 4.065 10 C -0.166 4.166 11 C 0.566 3.434 12 O -0.594 6.594 13 N -0.602 5.602 14 C 0.106 3.894 15 C -0.131 4.131 16 C 0.221 3.779 17 O -0.570 6.570 18 C -0.556 4.556 19 H 0.033 0.967 20 C 0.036 3.964 21 N -0.936 5.936 22 Si 0.939 3.061 23 H -0.265 1.265 24 H -0.307 1.307 25 H -0.209 1.209 26 C 0.103 3.897 27 C -0.182 4.182 28 C -0.070 4.070 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.378 0.622 40 H 0.269 0.731 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -24.582 8.764 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 N -0.195 5.195 4 H 0.251 0.749 5 C 0.007 3.993 6 C -0.133 4.133 7 C -0.060 4.060 8 C -0.170 4.170 9 C -0.084 4.084 10 C -0.172 4.172 11 C 0.358 3.642 12 O -0.477 6.477 13 N -0.333 5.333 14 C -0.015 4.015 15 C -0.168 4.168 16 C 0.180 3.820 17 O -0.378 6.378 18 C -0.593 4.593 19 H 0.052 0.948 20 C -0.164 4.164 21 N -0.575 5.575 22 Si 0.763 3.237 23 H -0.191 1.191 24 H -0.235 1.235 25 H -0.132 1.132 26 C -0.020 4.020 27 C -0.188 4.188 28 C -0.128 4.128 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.175 0.825 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.776 -24.654 8.765 26.796 hybrid contribution -0.012 2.185 -0.278 2.202 sum -5.789 -22.469 8.488 24.707 Atomic orbital electron populations 1.20586 0.85227 1.04791 1.04137 1.20861 0.95060 0.84804 1.03756 1.41926 1.04185 1.09182 1.64195 0.74866 1.18178 0.84222 0.94508 1.02368 1.19465 0.95159 0.90577 1.08096 1.21079 0.89459 1.01189 0.94289 1.21178 0.99676 0.92379 1.03797 1.21482 0.95324 0.95886 0.95721 1.18776 0.93292 0.90149 1.14986 1.18466 0.79664 0.87863 0.78211 1.90696 1.40172 1.72206 1.44576 1.48480 1.29464 1.07775 1.47607 1.22693 0.88838 0.97192 0.92784 1.23077 1.02386 0.93694 0.97676 1.19760 0.82019 0.92496 0.87715 1.86408 1.39618 1.45807 1.65972 1.21397 1.04439 1.19518 1.13989 0.94826 1.25824 1.01858 0.94721 0.94037 1.70060 1.39175 1.29112 1.19110 0.86096 0.78642 0.78152 0.80791 1.19084 1.23540 1.13162 1.22526 1.00054 0.80108 0.99292 1.20473 0.89501 0.96404 1.12417 1.20157 1.01594 0.88525 1.02476 0.89387 0.87573 0.91116 0.82475 0.81742 0.83756 0.88276 0.88815 0.89628 0.90451 0.77348 0.92167 0.93528 0.92179 0.90992 0.90420 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.99 71.24 0.71 -0.51 16 2 C 0.06 1.36 7.09 40.85 0.29 1.65 16 3 N -0.59 -16.83 5.97 -175.28 -1.05 -17.88 16 4 H 0.41 12.21 8.45 -92.71 -0.78 11.42 16 5 C 0.12 3.58 6.87 39.44 0.27 3.85 16 6 C -0.13 -3.18 6.35 -20.21 -0.13 -3.31 16 7 C -0.04 -0.79 10.09 22.51 0.23 -0.57 16 8 C -0.15 -2.78 10.00 22.21 0.22 -2.56 16 9 C -0.06 -1.57 7.91 22.56 0.18 -1.39 16 10 C -0.17 -5.24 5.46 -20.03 -0.11 -5.35 16 11 C 0.57 21.65 7.49 86.69 0.65 22.30 16 12 O -0.59 -26.34 16.68 -4.01 -0.07 -26.41 16 13 N -0.60 -22.58 3.33 -815.49 -2.71 -25.29 16 14 C 0.11 3.34 5.18 86.86 0.45 3.79 16 15 C -0.13 -5.02 4.77 31.99 0.15 -4.87 16 16 C 0.22 9.71 0.68 -10.34 -0.01 9.70 16 17 O -0.57 -23.35 10.54 -148.98 -1.57 -24.92 16 18 C -0.56 -30.34 8.78 25.60 0.22 -30.11 16 19 H 0.03 2.08 7.83 -2.91 -0.02 2.05 16 20 C 0.04 2.01 5.46 84.65 0.46 2.47 16 21 N -0.94 -56.75 13.96 21.45 0.30 -56.45 16 22 Si 0.94 42.26 23.87 68.60 1.64 43.90 16 23 H -0.27 -11.19 7.09 99.48 0.71 -10.48 16 24 H -0.31 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.21 -8.77 5.49 99.48 0.55 -8.22 16 26 C 0.10 4.41 6.22 86.74 0.54 4.95 16 27 C -0.18 -3.82 6.32 -18.61 -0.12 -3.94 16 28 C -0.07 -0.89 9.96 71.24 0.71 -0.18 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 0.96 7.69 -2.39 -0.02 0.94 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.14 3.09 5.72 -2.91 -0.02 3.08 16 35 H 0.10 2.64 6.70 -2.38 -0.02 2.62 16 36 H 0.09 2.56 7.28 -2.39 -0.02 2.54 16 37 H 0.09 3.16 4.93 -2.39 -0.01 3.15 16 38 H 0.08 3.13 8.04 -2.39 -0.02 3.11 16 39 H 0.38 13.82 9.07 -74.06 -0.67 13.15 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.05 2.20 7.67 -2.38 -0.02 2.19 16 42 H 0.06 2.52 8.07 -2.39 -0.02 2.50 16 43 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.08 0.74 7.73 -2.39 -0.02 0.72 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -74.90 358.81 0.70 -74.20 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.57 Total: 36.93 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.73 Total: -4.07 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -3.46 Total: -99.62 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -1.64 Total: -51.33 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.64 Total: 43.90 kcal Total: -74.90 0.70 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.939 kcal (2) G-P(sol) polarization free energy of solvation -74.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds