Wall clock time and date at job start Tue Mar 31 2020 15:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36907 * 125.05685 * 2 1 4 4 H 0.96998 * 125.01188 * 359.96634 * 3 2 1 5 5 C 1.37114 * 109.97163 * 180.02562 * 3 2 1 6 6 C 1.40641 * 107.26085 * 0.23846 * 5 3 2 7 7 C 1.39539 * 120.04936 * 180.35724 * 6 5 3 8 8 C 1.37912 * 119.98545 * 359.73934 * 7 6 5 9 9 C 1.38325 * 120.59524 * 0.02562 * 8 7 6 10 10 C 1.39347 * 120.49331 * 359.97392 * 9 8 7 11 11 C 1.47501 * 120.20431 * 180.02562 * 10 9 8 12 12 O 1.21595 * 119.99760 * 187.83960 * 11 10 9 13 13 N 1.34777 * 120.00199 * 7.84385 * 11 10 9 14 14 C 1.47427 * 125.64925 * 174.88849 * 13 11 10 15 15 C 1.55390 * 104.87534 * 204.16387 * 14 13 11 16 16 C 1.55160 * 101.36360 * 323.01559 * 15 14 13 17 17 O 1.42900 * 110.71962 * 277.04319 * 16 15 14 18 18 C 1.50696 * 110.72117 * 153.94558 * 16 15 14 19 19 H 1.08001 * 120.00165 * 2.44178 * 18 16 15 20 20 C 1.37873 * 120.00349 * 182.44051 * 18 16 15 21 21 N 1.31519 * 120.00136 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00253 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47146 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47123 * 120.00217 * 22 20 18 25 25 H 1.48506 * 109.47332 * 239.99902 * 22 20 18 26 26 C 1.47020 * 125.64678 * 354.91934 * 13 11 10 27 27 C 1.34218 * 125.06245 * 180.67635 * 2 1 3 28 28 C 1.50703 * 126.54873 * 359.34111 * 27 2 1 29 29 H 1.09001 * 109.46654 * 90.03426 * 1 2 3 30 30 H 1.09002 * 109.46625 * 210.02901 * 1 2 3 31 31 H 1.08993 * 109.47248 * 330.03023 * 1 2 3 32 32 H 1.07997 * 120.00779 * 179.72727 * 7 6 5 33 33 H 1.07998 * 119.70345 * 179.97438 * 8 7 6 34 34 H 1.07991 * 119.74938 * 179.97438 * 9 8 7 35 35 H 1.08998 * 110.36484 * 322.99725 * 14 13 11 36 36 H 1.09003 * 110.36770 * 85.21097 * 14 13 11 37 37 H 1.08992 * 111.18828 * 204.98331 * 15 14 13 38 38 H 1.08990 * 111.02257 * 80.97659 * 15 14 13 39 39 H 0.96700 * 114.00090 * 177.55625 * 17 16 15 40 40 H 0.96999 * 120.00372 * 180.02562 * 21 20 18 41 41 H 1.08995 * 109.87838 * 59.49814 * 26 13 11 42 42 H 1.08997 * 109.88618 * 298.33075 * 26 13 11 43 43 H 1.09004 * 109.47075 * 270.87989 * 28 27 2 44 44 H 1.09001 * 109.47232 * 30.88208 * 28 27 2 45 45 H 1.08995 * 109.46967 * 150.88113 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2934 1.1207 0.0000 4 1 1.9628 2.0326 -0.0005 5 6 3.6173 0.7638 -0.0006 6 6 3.6707 -0.6415 -0.0065 7 6 4.9042 -1.2939 -0.0009 8 6 6.0720 -0.5603 0.0051 9 6 6.0347 0.8225 0.0061 10 6 4.8153 1.4970 0.0006 11 6 4.7830 2.9716 0.0011 12 8 3.7260 3.5565 0.1399 13 7 5.9250 3.6708 -0.1523 14 6 6.0250 5.1364 -0.2770 15 6 7.3617 5.3823 -1.0302 16 6 8.2606 4.2697 -0.4290 17 8 8.8161 4.6880 0.8194 18 6 9.3524 3.8865 -1.3945 19 1 9.4447 4.4035 -2.3382 20 6 10.2335 2.8759 -1.0731 21 7 10.1209 2.2460 0.0759 22 14 11.5872 2.4014 -2.2696 23 1 11.4990 3.2557 -3.4810 24 1 12.9099 2.5954 -1.6229 25 1 11.4294 0.9761 -2.6558 26 6 7.2772 3.0981 -0.2237 27 6 2.2781 -1.0985 -0.0130 28 6 1.8028 -2.5286 -0.0159 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5133 32 1 4.9444 -2.3732 -0.0011 33 1 7.0241 -1.0699 0.0098 34 1 6.9575 1.3834 0.0112 35 1 5.1871 5.5259 -0.8551 36 1 6.0528 5.6000 0.7092 37 1 7.7628 6.3711 -0.8081 38 1 7.2363 5.2454 -2.1042 39 1 9.3562 4.0145 1.2550 40 1 10.7411 1.5352 0.3022 41 1 7.3432 2.4073 -1.0642 42 1 7.5091 2.5779 0.7056 43 1 1.6829 -2.8738 1.0111 44 1 0.8463 -2.5925 -0.5348 45 1 2.5353 -3.1539 -0.5262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:23 Heat of formation + Delta-G solvation = -16.315975 kcal Electronic energy + Delta-G solvation = -28470.090793 eV Core-core repulsion = 24646.122986 eV Total energy + Delta-G solvation = -3823.967807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32553 -39.50221 -37.27747 -36.68828 -34.28526 -33.06704 -32.31824 -31.47471 -30.51519 -29.39784 -28.11050 -27.60142 -25.86479 -25.21874 -23.65376 -21.86857 -21.26517 -19.99661 -19.48345 -18.63069 -17.33892 -17.10268 -16.64221 -15.76205 -15.51974 -15.16557 -14.83675 -14.76605 -14.71009 -14.10361 -13.76026 -13.24348 -13.15858 -13.05268 -13.01305 -12.93913 -12.71036 -12.59103 -12.36782 -12.29395 -11.76955 -11.72044 -11.62209 -11.39854 -11.19118 -11.13634 -10.98281 -10.65746 -10.60108 -10.35364 -10.24239 -9.52502 -9.34907 -9.28132 -8.76399 -8.33319 -8.09734 -7.86010 -7.40602 -6.40286 -4.48188 0.98847 1.89413 2.57100 3.13691 3.23767 3.27356 3.29802 3.37695 3.58875 4.18950 4.25364 4.66254 4.85418 4.90916 5.05259 5.11213 5.22723 5.30766 5.35627 5.38947 5.54935 5.57432 5.68036 5.70230 5.71026 5.79541 5.83842 5.84683 5.93052 6.04342 6.16042 6.17513 6.29707 6.38934 6.57817 6.62278 6.70304 6.82061 6.84143 6.91149 6.98352 6.99477 7.21838 7.35883 7.63236 7.72973 7.88722 8.15448 8.54600 8.63962 9.20825 9.31383 10.67627 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.003810 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.340909 B = 7346.562788 C = 8666.888903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.067 3.933 3 N -0.576 5.576 4 H 0.423 0.577 5 C 0.153 3.847 6 C -0.121 4.121 7 C -0.050 4.050 8 C -0.155 4.155 9 C -0.090 4.090 10 C -0.147 4.147 11 C 0.571 3.429 12 O -0.579 6.579 13 N -0.602 5.602 14 C 0.110 3.890 15 C -0.118 4.118 16 C 0.247 3.753 17 O -0.583 6.583 18 C -0.535 4.535 19 H 0.068 0.932 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.081 3.919 27 C -0.175 4.175 28 C -0.072 4.072 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.181 0.819 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.384 0.616 40 H 0.271 0.729 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -7.509 -0.032 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 N -0.180 5.180 4 H 0.263 0.737 5 C 0.042 3.958 6 C -0.125 4.125 7 C -0.069 4.069 8 C -0.174 4.174 9 C -0.108 4.108 10 C -0.153 4.153 11 C 0.362 3.638 12 O -0.462 6.462 13 N -0.333 5.333 14 C -0.012 4.012 15 C -0.156 4.156 16 C 0.206 3.794 17 O -0.392 6.392 18 C -0.573 4.573 19 H 0.086 0.914 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.040 4.040 27 C -0.182 4.182 28 C -0.129 4.129 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.198 0.802 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.235 0.765 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.552 -6.696 0.009 15.116 hybrid contribution 1.059 -0.490 -0.415 1.238 sum -12.493 -7.186 -0.405 14.418 Atomic orbital electron populations 1.20425 0.87990 1.03453 1.02887 1.20125 0.93235 0.85708 1.05068 1.41786 1.03914 1.08795 1.63466 0.73726 1.17885 0.83929 0.93177 1.00774 1.18983 0.93251 0.91455 1.08845 1.20666 0.90481 0.99272 0.96516 1.20923 0.97939 0.93862 1.04666 1.23048 0.99028 0.95634 0.93090 1.18882 0.91447 0.92072 1.12909 1.17875 0.82694 0.86544 0.76650 1.90604 1.30260 1.71674 1.53646 1.48566 1.07109 1.08175 1.69428 1.22297 0.98361 0.80336 1.00224 1.22862 0.93270 1.00377 0.99117 1.19548 0.89363 0.87289 0.83197 1.86133 1.70390 1.45936 1.36764 1.21593 1.13365 1.18519 1.03866 0.91360 1.25045 0.97435 0.95095 0.95544 1.69624 1.38117 1.24298 1.21798 0.86353 0.81289 0.78392 0.80956 1.19610 1.20718 1.20655 1.23576 0.79707 0.99415 1.01346 1.19957 0.90438 0.94592 1.13260 1.20051 1.00471 0.91097 1.01313 0.90680 0.89911 0.91398 0.86128 0.85374 0.80216 0.91719 0.91736 0.90316 0.90459 0.76514 0.91870 0.90169 0.90387 0.92162 0.92162 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.99 36.01 0.36 -0.43 16 2 C 0.07 0.88 7.09 -81.74 -0.58 0.30 16 3 N -0.58 -9.12 5.87 -6.75 -0.04 -9.16 16 4 H 0.42 6.58 7.58 -40.82 -0.31 6.27 16 5 C 0.15 2.76 6.87 -83.76 -0.58 2.18 16 6 C -0.12 -1.96 6.35 -105.15 -0.67 -2.62 16 7 C -0.05 -0.75 10.09 -39.22 -0.40 -1.15 16 8 C -0.15 -2.48 10.00 -39.67 -0.40 -2.88 16 9 C -0.09 -1.65 8.59 -39.14 -0.34 -1.98 16 10 C -0.15 -2.86 5.88 -104.88 -0.62 -3.47 16 11 C 0.57 11.97 7.80 -12.49 -0.10 11.87 16 12 O -0.58 -12.66 15.51 5.28 0.08 -12.58 16 13 N -0.60 -12.50 3.33 -175.87 -0.59 -13.09 16 14 C 0.11 2.15 6.89 -2.27 -0.02 2.13 16 15 C -0.12 -2.36 6.26 -24.32 -0.15 -2.51 16 16 C 0.25 5.62 0.85 -89.93 -0.08 5.55 16 17 O -0.58 -14.02 13.07 -35.23 -0.46 -14.48 16 18 C -0.54 -13.09 8.11 -34.44 -0.28 -13.37 16 19 H 0.07 1.67 7.77 -52.49 -0.41 1.27 16 20 C 0.07 1.72 5.27 -17.82 -0.09 1.63 16 21 N -0.90 -21.54 10.96 55.43 0.61 -20.93 16 22 Si 0.90 19.20 29.54 -169.99 -5.02 14.18 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 C 0.08 1.74 3.38 -3.06 -0.01 1.73 16 27 C -0.18 -2.39 6.32 -102.68 -0.65 -3.04 16 28 C -0.07 -0.71 9.96 36.01 0.36 -0.35 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.58 7.69 -51.93 -0.40 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.18 3.54 2.73 -58.22 -0.16 3.38 16 35 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 39 H 0.38 9.31 7.23 45.56 0.33 9.63 16 40 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 41 H 0.08 1.78 6.35 -51.93 -0.33 1.45 16 42 H 0.08 1.74 6.66 -51.93 -0.35 1.40 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.48 7.73 -51.93 -0.40 0.08 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -27.81 362.43 -9.56 -37.36 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -5.38 Total: 19.65 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -4.22 Total: -6.41 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.02 Total: -43.18 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.38 Total: -27.06 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.81 -9.56 -37.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.047 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds