Wall clock time and date at job start Tue Mar 31 2020 15:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36907 * 125.05685 * 2 1 4 4 H 0.96998 * 125.01188 * 359.96634 * 3 2 1 5 5 C 1.37114 * 109.97163 * 180.02562 * 3 2 1 6 6 C 1.40641 * 107.26085 * 0.23846 * 5 3 2 7 7 C 1.39539 * 120.04936 * 180.35724 * 6 5 3 8 8 C 1.37912 * 119.98545 * 359.73934 * 7 6 5 9 9 C 1.38325 * 120.59524 * 0.02562 * 8 7 6 10 10 C 1.39347 * 120.49331 * 359.97392 * 9 8 7 11 11 C 1.47501 * 120.20431 * 180.02562 * 10 9 8 12 12 O 1.21595 * 119.99760 * 187.83960 * 11 10 9 13 13 N 1.34777 * 120.00199 * 7.84385 * 11 10 9 14 14 C 1.47427 * 125.64925 * 174.88849 * 13 11 10 15 15 C 1.55390 * 104.87534 * 204.16387 * 14 13 11 16 16 C 1.55160 * 101.36360 * 323.01559 * 15 14 13 17 17 O 1.42900 * 110.71962 * 277.04319 * 16 15 14 18 18 C 1.50696 * 110.72117 * 153.94558 * 16 15 14 19 19 H 1.08001 * 120.00165 * 2.44178 * 18 16 15 20 20 C 1.37873 * 120.00349 * 182.44051 * 18 16 15 21 21 N 1.31519 * 120.00136 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00253 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47146 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47123 * 120.00217 * 22 20 18 25 25 H 1.48506 * 109.47332 * 239.99902 * 22 20 18 26 26 C 1.47020 * 125.64678 * 354.91934 * 13 11 10 27 27 C 1.34218 * 125.06245 * 180.67635 * 2 1 3 28 28 C 1.50703 * 126.54873 * 359.34111 * 27 2 1 29 29 H 1.09001 * 109.46654 * 90.03426 * 1 2 3 30 30 H 1.09002 * 109.46625 * 210.02901 * 1 2 3 31 31 H 1.08993 * 109.47248 * 330.03023 * 1 2 3 32 32 H 1.07997 * 120.00779 * 179.72727 * 7 6 5 33 33 H 1.07998 * 119.70345 * 179.97438 * 8 7 6 34 34 H 1.07991 * 119.74938 * 179.97438 * 9 8 7 35 35 H 1.08998 * 110.36484 * 322.99725 * 14 13 11 36 36 H 1.09003 * 110.36770 * 85.21097 * 14 13 11 37 37 H 1.08992 * 111.18828 * 204.98331 * 15 14 13 38 38 H 1.08990 * 111.02257 * 80.97659 * 15 14 13 39 39 H 0.96700 * 114.00090 * 177.55625 * 17 16 15 40 40 H 0.96999 * 120.00372 * 180.02562 * 21 20 18 41 41 H 1.08995 * 109.87838 * 59.49814 * 26 13 11 42 42 H 1.08997 * 109.88618 * 298.33075 * 26 13 11 43 43 H 1.09004 * 109.47075 * 270.87989 * 28 27 2 44 44 H 1.09001 * 109.47232 * 30.88208 * 28 27 2 45 45 H 1.08995 * 109.46967 * 150.88113 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2934 1.1207 0.0000 4 1 1.9628 2.0326 -0.0005 5 6 3.6173 0.7638 -0.0006 6 6 3.6707 -0.6415 -0.0065 7 6 4.9042 -1.2939 -0.0009 8 6 6.0720 -0.5603 0.0051 9 6 6.0347 0.8225 0.0061 10 6 4.8153 1.4970 0.0006 11 6 4.7830 2.9716 0.0011 12 8 3.7260 3.5565 0.1399 13 7 5.9250 3.6708 -0.1523 14 6 6.0250 5.1364 -0.2770 15 6 7.3617 5.3823 -1.0302 16 6 8.2606 4.2697 -0.4290 17 8 8.8161 4.6880 0.8194 18 6 9.3524 3.8865 -1.3945 19 1 9.4447 4.4035 -2.3382 20 6 10.2335 2.8759 -1.0731 21 7 10.1209 2.2460 0.0759 22 14 11.5872 2.4014 -2.2696 23 1 11.4990 3.2557 -3.4810 24 1 12.9099 2.5954 -1.6229 25 1 11.4294 0.9761 -2.6558 26 6 7.2772 3.0981 -0.2237 27 6 2.2781 -1.0985 -0.0130 28 6 1.8028 -2.5286 -0.0159 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5133 32 1 4.9444 -2.3732 -0.0011 33 1 7.0241 -1.0699 0.0098 34 1 6.9575 1.3834 0.0112 35 1 5.1871 5.5259 -0.8551 36 1 6.0528 5.6000 0.7092 37 1 7.7628 6.3711 -0.8081 38 1 7.2363 5.2454 -2.1042 39 1 9.3562 4.0145 1.2550 40 1 10.7411 1.5352 0.3022 41 1 7.3432 2.4073 -1.0642 42 1 7.5091 2.5779 0.7056 43 1 1.6829 -2.8738 1.0111 44 1 0.8463 -2.5925 -0.5348 45 1 2.5353 -3.1539 -0.5262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:22 Heat of formation + Delta-G solvation = -32.885220 kcal Electronic energy + Delta-G solvation = -28470.809289 eV Core-core repulsion = 24646.122986 eV Total energy + Delta-G solvation = -3824.686303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53803 -41.07569 -38.97428 -37.96865 -36.05072 -34.20935 -34.12460 -32.79711 -31.67952 -30.85478 -29.68051 -28.69168 -27.30194 -26.58731 -25.16547 -23.27058 -22.57997 -21.59102 -20.98824 -19.83950 -19.12255 -18.45397 -18.03622 -17.37023 -17.08314 -16.72878 -16.38573 -16.03824 -15.89064 -15.65858 -15.04313 -14.83077 -14.75381 -14.68634 -14.05502 -13.96745 -13.72211 -13.57941 -13.53756 -13.47557 -13.39816 -13.17475 -12.91230 -12.80321 -12.63710 -12.40173 -12.35624 -12.28283 -12.21337 -12.10005 -11.85518 -11.12208 -11.08758 -10.60593 -10.52136 -10.15745 -9.72023 -9.15428 -8.54536 -8.24177 -6.38647 -0.31540 0.60430 1.41248 1.44074 1.49700 1.58248 1.94309 1.98924 2.18824 2.41744 2.90297 3.01563 3.44497 3.66701 3.81086 3.95424 3.97819 4.05291 4.11688 4.22192 4.26076 4.34939 4.41645 4.44132 4.53691 4.65818 4.73709 4.76247 4.84909 4.88101 4.97653 5.00557 5.04979 5.07603 5.16873 5.17891 5.25160 5.26981 5.41238 5.46497 5.55907 5.72616 5.76594 5.89752 6.04590 6.15268 6.44452 6.62781 6.66444 7.00206 7.31697 7.40310 8.82692 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.003810 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.340909 B = 7346.562788 C = 8666.888903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.064 3.936 3 N -0.583 5.583 4 H 0.420 0.580 5 C 0.126 3.874 6 C -0.134 4.134 7 C -0.036 4.036 8 C -0.163 4.163 9 C -0.101 4.101 10 C -0.174 4.174 11 C 0.565 3.435 12 O -0.594 6.594 13 N -0.608 5.608 14 C 0.111 3.889 15 C -0.111 4.111 16 C 0.232 3.768 17 O -0.590 6.590 18 C -0.558 4.558 19 H 0.062 0.938 20 C 0.038 3.962 21 N -0.908 5.908 22 Si 0.957 3.043 23 H -0.274 1.274 24 H -0.281 1.281 25 H -0.277 1.277 26 C 0.105 3.895 27 C -0.182 4.182 28 C -0.070 4.070 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.379 0.621 40 H 0.274 0.726 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -9.633 -0.527 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 N -0.187 5.187 4 H 0.259 0.741 5 C 0.015 3.985 6 C -0.139 4.139 7 C -0.055 4.055 8 C -0.182 4.182 9 C -0.120 4.120 10 C -0.180 4.180 11 C 0.358 3.642 12 O -0.479 6.479 13 N -0.338 5.338 14 C -0.011 4.011 15 C -0.149 4.149 16 C 0.191 3.809 17 O -0.399 6.399 18 C -0.596 4.596 19 H 0.080 0.920 20 C -0.163 4.163 21 N -0.547 5.547 22 Si 0.783 3.217 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.202 1.202 26 C -0.017 4.017 27 C -0.189 4.189 28 C -0.127 4.127 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.179 0.821 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.987 -8.826 -0.483 17.400 hybrid contribution 1.429 0.128 -0.236 1.454 sum -13.559 -8.697 -0.720 16.124 Atomic orbital electron populations 1.20590 0.84672 1.04914 1.04292 1.20929 0.95236 0.84658 1.03528 1.41970 1.03625 1.09509 1.63554 0.74117 1.18119 0.84412 0.94241 1.01727 1.19479 0.95098 0.90866 1.08479 1.21044 0.89475 1.00972 0.93987 1.21121 0.99408 0.92894 1.04820 1.22894 0.98012 0.96839 0.94255 1.18866 0.92680 0.91108 1.15377 1.18267 0.82371 0.87479 0.76130 1.90568 1.30587 1.72238 1.54514 1.48623 1.06873 1.08635 1.69672 1.22326 0.98599 0.79866 1.00267 1.22836 0.92755 0.99960 0.99354 1.19762 0.89664 0.88824 0.82611 1.86123 1.70448 1.45994 1.37363 1.21762 1.14500 1.19207 1.04107 0.91951 1.25616 0.98933 0.94960 0.96818 1.69686 1.38413 1.24206 1.22444 0.85513 0.78947 0.78054 0.79147 1.19822 1.20713 1.20206 1.23191 0.79877 0.98480 1.00110 1.20457 0.88999 0.96675 1.12752 1.20155 1.01613 0.88407 1.02496 0.89150 0.87572 0.90812 0.82489 0.83669 0.82056 0.90430 0.91963 0.89387 0.89784 0.77026 0.91598 0.91297 0.91784 0.90976 0.89972 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.99 71.24 0.71 -0.54 16 2 C 0.06 1.55 7.09 40.85 0.29 1.84 16 3 N -0.58 -18.32 5.87 -175.28 -1.03 -19.35 16 4 H 0.42 13.24 7.58 -92.71 -0.70 12.54 16 5 C 0.13 4.58 6.87 39.44 0.27 4.85 16 6 C -0.13 -4.18 6.35 -20.20 -0.13 -4.30 16 7 C -0.04 -1.02 10.09 22.51 0.23 -0.79 16 8 C -0.16 -5.16 10.00 22.21 0.22 -4.94 16 9 C -0.10 -3.86 8.59 22.56 0.19 -3.67 16 10 C -0.17 -6.99 5.88 -20.03 -0.12 -7.11 16 11 C 0.56 24.53 7.80 86.69 0.68 25.20 16 12 O -0.59 -26.74 15.51 -4.01 -0.06 -26.81 16 13 N -0.61 -26.06 3.33 -828.60 -2.76 -28.82 16 14 C 0.11 4.41 6.89 87.02 0.60 5.01 16 15 C -0.11 -4.48 6.26 32.16 0.20 -4.28 16 16 C 0.23 10.80 0.85 -10.35 -0.01 10.79 16 17 O -0.59 -29.07 13.07 -148.98 -1.95 -31.02 16 18 C -0.56 -27.67 8.11 25.60 0.21 -27.46 16 19 H 0.06 3.09 7.77 -2.91 -0.02 3.07 16 20 C 0.04 1.86 5.27 84.65 0.45 2.31 16 21 N -0.91 -44.04 10.96 21.45 0.24 -43.81 16 22 Si 0.96 39.32 29.54 68.60 2.03 41.35 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 26 C 0.11 4.71 3.38 86.73 0.29 5.00 16 27 C -0.18 -4.51 6.32 -18.61 -0.12 -4.63 16 28 C -0.07 -1.10 9.96 71.24 0.71 -0.39 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 1.05 7.69 -2.39 -0.02 1.03 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.16 6.69 2.73 -8.30 -0.02 6.66 16 35 H 0.08 2.85 8.09 -2.39 -0.02 2.83 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.08 3.24 8.04 -2.39 -0.02 3.22 16 39 H 0.38 18.97 7.23 -74.06 -0.54 18.43 16 40 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 41 H 0.07 3.21 6.35 -2.39 -0.02 3.19 16 42 H 0.06 3.02 6.66 -2.39 -0.02 3.00 16 43 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.08 0.94 7.73 -2.39 -0.02 0.93 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -60.63 362.43 0.94 -59.69 By element: Atomic # 1 Polarization: 52.08 SS G_CDS: -0.20 Total: 51.88 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.68 Total: -3.11 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -3.55 Total: -91.97 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -2.01 Total: -57.82 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -60.63 0.94 -59.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.802 kcal (2) G-P(sol) polarization free energy of solvation -60.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds