Wall clock time and date at job start Tue Mar 31 2020 14:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 120.00234 * 2 1 4 4 C 1.38231 * 120.00426 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99770 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00229 * 179.97438 * 5 4 3 7 7 C 1.52997 * 110.53600 * 89.29705 * 6 5 4 8 8 N 1.47321 * 110.59675 * 326.46998 * 6 5 4 9 9 C 1.34530 * 106.61566 * 241.47198 * 8 6 5 10 10 O 1.21534 * 123.76549 * 180.02562 * 9 8 6 11 11 N 1.33788 * 112.45897 * 359.97438 * 9 8 6 12 12 C 1.46501 * 124.17539 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47210 * 89.62051 * 12 11 9 14 14 C 1.50697 * 115.55109 * 185.58530 * 13 12 11 15 15 H 1.07998 * 119.99991 * 144.47643 * 14 13 12 16 16 C 1.37882 * 120.00054 * 324.47024 * 14 13 12 17 17 N 1.31516 * 119.99847 * 349.32478 * 16 14 13 18 18 Si 1.86797 * 119.99842 * 169.31901 * 16 14 13 19 19 H 1.48501 * 109.47154 * 94.66877 * 18 16 14 20 20 H 1.48506 * 109.46942 * 214.66859 * 18 16 14 21 21 H 1.48496 * 109.47492 * 334.66737 * 18 16 14 22 22 C 1.53002 * 117.49725 * 39.91541 * 13 12 11 23 23 C 1.53005 * 117.49841 * 331.25628 * 13 12 11 24 24 C 1.35112 * 111.68644 * 359.91214 * 11 9 8 25 25 O 1.21239 * 127.33492 * 180.09453 * 24 11 9 26 26 C 1.38236 * 119.99759 * 0.27479 * 5 4 3 27 27 C 1.38230 * 120.00037 * 359.51242 * 26 5 4 28 28 H 1.08996 * 109.47309 * 89.99451 * 1 2 3 29 29 H 1.08994 * 109.47151 * 210.00169 * 1 2 3 30 30 H 1.09006 * 109.46608 * 329.99926 * 1 2 3 31 31 H 1.08006 * 120.00108 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00435 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47214 * 60.20539 * 7 6 5 34 34 H 1.08996 * 109.47609 * 180.21285 * 7 6 5 35 35 H 1.09001 * 109.47070 * 300.20910 * 7 6 5 36 36 H 0.97002 * 126.69128 * 61.44113 * 8 6 5 37 37 H 1.09001 * 109.47108 * 209.61781 * 12 11 9 38 38 H 1.08998 * 109.47353 * 329.61744 * 12 11 9 39 39 H 0.97001 * 119.99444 * 185.17672 * 17 16 14 40 40 H 1.09003 * 117.49753 * 359.97438 * 22 13 12 41 41 H 1.09000 * 117.49933 * 145.02123 * 22 13 12 42 42 H 1.09001 * 117.49872 * 214.97961 * 23 13 12 43 43 H 1.09000 * 117.49738 * 359.97438 * 23 13 12 44 44 H 1.07998 * 119.99462 * 179.72874 * 26 5 4 45 45 H 1.08001 * 120.00343 * 180.28204 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 -0.0001 0.0016 7 6 6.3154 0.0187 1.4342 8 7 6.2970 1.1487 -0.7612 9 6 7.0086 0.6418 -1.7841 10 8 7.5778 1.3231 -2.6142 11 7 7.0206 -0.6960 -1.7849 12 6 7.7177 -1.5121 -2.7821 13 6 9.1495 -1.7781 -2.3128 14 6 10.0335 -2.4976 -3.2986 15 1 11.0831 -2.2512 -3.3626 16 6 9.5024 -3.4705 -4.1187 17 7 8.2853 -3.9198 -3.9031 18 14 10.5116 -4.1502 -5.5361 19 1 11.2067 -5.3879 -5.1000 20 1 9.6144 -4.4623 -6.6775 21 1 11.5158 -3.1408 -5.9576 22 6 9.3624 -2.0730 -0.8266 23 6 9.8039 -0.7291 -1.4116 24 6 6.3127 -1.2023 -0.7514 25 8 6.1390 -2.3715 -0.4820 26 6 3.5805 -1.1972 -0.0036 27 6 2.1982 -1.1972 0.0003 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.9646 -0.8662 1.9653 34 1 7.4051 0.0222 1.4140 35 1 5.9587 0.9136 1.9441 36 1 6.1528 2.0876 -0.5645 37 1 7.1941 -2.4600 -2.9062 38 1 7.7400 -0.9820 -3.7342 39 1 7.9394 -4.6558 -4.4318 40 1 8.4826 -2.0771 -0.1832 41 1 10.1422 -2.7871 -0.5619 42 1 10.8740 -0.5596 -1.5315 43 1 9.2146 0.1508 -1.1534 44 1 4.1205 -2.1324 -0.0072 45 1 1.6581 -2.1324 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596237750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:06 Heat of formation + Delta-G solvation = 14.552353 kcal Electronic energy + Delta-G solvation = -29002.023933 eV Core-core repulsion = 25179.394678 eV Total energy + Delta-G solvation = -3822.629256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31672 -39.47127 -38.11245 -36.93954 -35.93791 -34.17277 -32.49964 -32.19043 -31.08390 -30.27969 -27.15506 -27.02598 -25.54963 -24.09114 -22.98401 -22.27156 -21.13887 -20.91700 -20.15297 -18.83365 -17.73705 -17.12248 -16.52068 -15.98692 -15.66970 -15.43993 -15.01850 -14.94778 -14.70103 -14.35457 -14.09558 -13.83560 -13.78498 -13.73895 -13.37134 -12.97686 -12.52118 -12.46390 -12.43988 -12.23916 -12.00514 -11.98390 -11.56020 -11.38841 -11.15818 -10.99462 -10.79707 -10.50452 -10.34579 -10.19406 -10.02707 -9.68965 -9.36582 -9.11325 -9.03309 -8.90896 -8.68064 -8.59285 -8.07422 -6.12486 -4.15037 1.09805 1.29217 2.04047 2.73179 3.25743 3.33442 3.34430 3.39143 3.52979 3.67367 4.15752 4.32649 4.36054 4.68171 4.74661 4.84907 4.93090 4.94896 5.15081 5.32940 5.37081 5.42607 5.47536 5.50979 5.56428 5.64806 5.71158 5.87387 5.92568 5.98705 6.06716 6.21949 6.27601 6.38486 6.43270 6.44793 6.47140 6.70646 6.77905 6.85487 6.97241 7.02466 7.10522 7.33105 7.47820 7.70017 7.86042 7.90171 8.31431 8.59525 8.81649 9.44396 10.90887 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.003732 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.819932 B = 7500.621424 C = 8099.388419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.095 4.095 5 C -0.093 4.093 6 C 0.160 3.840 7 C -0.141 4.141 8 N -0.729 5.729 9 C 0.701 3.299 10 O -0.539 6.539 11 N -0.564 5.564 12 C 0.150 3.850 13 C 0.046 3.954 14 C -0.486 4.486 15 H 0.066 0.934 16 C 0.068 3.932 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.271 1.271 22 C -0.202 4.202 23 C -0.207 4.207 24 C 0.534 3.466 25 O -0.454 6.454 26 C -0.102 4.102 27 C -0.117 4.117 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.431 0.569 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.266 0.734 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.144 0.856 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.386 8.994 10.728 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.113 4.113 5 C -0.094 4.094 6 C 0.069 3.931 7 C -0.199 4.199 8 N -0.394 5.394 9 C 0.402 3.598 10 O -0.412 6.412 11 N -0.309 5.309 12 C 0.032 3.968 13 C 0.045 3.955 14 C -0.524 4.524 15 H 0.084 0.916 16 C -0.135 4.135 17 N -0.521 5.521 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.240 4.240 23 C -0.244 4.244 24 C 0.319 3.681 25 O -0.324 6.324 26 C -0.120 4.120 27 C -0.135 4.135 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.275 0.725 37 H 0.157 0.843 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.162 0.838 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.254 8.523 10.173 19.476 hybrid contribution 0.545 0.126 -0.513 0.759 sum -13.709 8.649 9.660 18.870 Atomic orbital electron populations 1.20800 0.91181 1.02724 1.02411 1.19998 0.96129 0.93279 0.98982 1.20943 0.93767 0.97590 1.01801 1.20787 0.94136 0.96975 0.99402 1.19433 0.92149 0.94404 1.03420 1.20165 0.91975 0.86225 0.94747 1.21974 1.02230 1.04073 0.91625 1.45670 1.55907 1.08278 1.29544 1.15991 0.79253 0.82559 0.81964 1.90986 1.48030 1.61789 1.40432 1.46946 1.47909 1.07250 1.28770 1.21953 0.93032 0.94874 0.86928 1.19253 0.91900 0.95520 0.88854 1.20503 0.94684 1.19798 1.17369 0.91577 1.25039 0.95136 0.96053 0.97295 1.69711 1.16185 1.25799 1.40368 0.86417 0.79922 0.79084 0.81772 1.20613 1.20867 1.19584 1.23017 1.01574 0.98006 1.01410 1.22902 0.99762 0.91949 1.09795 1.20421 0.77593 0.89302 0.80746 1.90749 1.56701 1.16786 1.68150 1.21478 0.94591 0.98659 0.97241 1.21044 0.93858 0.97691 1.00860 0.91098 0.91459 0.91594 0.85917 0.86136 0.89842 0.90783 0.90609 0.72514 0.84296 0.90245 0.92353 0.91907 0.90352 0.90579 0.91816 0.83845 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.08 -0.84 5.88 -104.63 -0.62 -1.45 16 3 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 4 C -0.09 -1.01 9.35 -39.58 -0.37 -1.38 16 5 C -0.09 -1.19 4.89 -104.62 -0.51 -1.70 16 6 C 0.16 2.24 1.16 -133.24 -0.15 2.09 16 7 C -0.14 -1.62 8.96 37.16 0.33 -1.28 16 8 N -0.73 -10.22 5.33 -54.02 -0.29 -10.51 16 9 C 0.70 13.47 6.74 -88.02 -0.59 12.88 16 10 O -0.54 -12.03 17.19 5.34 0.09 -11.94 16 11 N -0.56 -11.68 1.86 -120.64 -0.22 -11.90 16 12 C 0.15 3.68 5.03 -4.04 -0.02 3.66 16 13 C 0.05 1.17 2.36 -155.66 -0.37 0.81 16 14 C -0.49 -13.36 9.04 -34.44 -0.31 -13.67 16 15 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 16 C 0.07 1.82 5.25 -17.82 -0.09 1.73 16 17 N -0.88 -24.28 10.77 55.43 0.60 -23.68 16 18 Si 0.90 20.86 29.55 -169.99 -5.02 15.84 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.20 -4.80 9.63 -26.69 -0.26 -5.05 16 23 C -0.21 -4.79 9.56 -26.69 -0.26 -5.05 16 24 C 0.53 9.98 4.92 -10.40 -0.05 9.93 16 25 O -0.45 -9.42 14.92 5.59 0.08 -9.34 16 26 C -0.10 -1.36 9.18 -39.59 -0.36 -1.72 16 27 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.12 1.03 7.02 -52.49 -0.37 0.66 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.43 4.59 8.14 -40.82 -0.33 4.26 16 37 H 0.14 3.69 5.87 -51.93 -0.30 3.39 16 38 H 0.08 2.03 7.87 -51.93 -0.41 1.62 16 39 H 0.27 6.95 8.32 -40.82 -0.34 6.62 16 40 H 0.06 1.44 5.59 -51.93 -0.29 1.15 16 41 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 42 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 43 H 0.06 1.42 5.60 -51.93 -0.29 1.13 16 44 H 0.14 2.14 5.69 -52.49 -0.30 1.84 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -31.24 365.36 -9.36 -40.60 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.06 Total: 9.40 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.04 Total: -3.96 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.08 Total: -46.09 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.18 Total: -21.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.24 -9.36 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596237750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.148 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds