Wall clock time and date at job start Tue Mar 31 2020 14:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 120.00234 * 2 1 4 4 C 1.38231 * 120.00426 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99770 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00229 * 179.97438 * 5 4 3 7 7 C 1.52997 * 110.53600 * 89.29705 * 6 5 4 8 8 N 1.47321 * 110.59675 * 326.46998 * 6 5 4 9 9 C 1.34530 * 106.61566 * 241.47198 * 8 6 5 10 10 O 1.21534 * 123.76549 * 180.02562 * 9 8 6 11 11 N 1.33788 * 112.45897 * 359.97438 * 9 8 6 12 12 C 1.46501 * 124.17539 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47210 * 89.62051 * 12 11 9 14 14 C 1.50697 * 115.55109 * 185.58530 * 13 12 11 15 15 H 1.07998 * 119.99991 * 144.47643 * 14 13 12 16 16 C 1.37882 * 120.00054 * 324.47024 * 14 13 12 17 17 N 1.31516 * 119.99847 * 349.32478 * 16 14 13 18 18 Si 1.86797 * 119.99842 * 169.31901 * 16 14 13 19 19 H 1.48501 * 109.47154 * 94.66877 * 18 16 14 20 20 H 1.48506 * 109.46942 * 214.66859 * 18 16 14 21 21 H 1.48496 * 109.47492 * 334.66737 * 18 16 14 22 22 C 1.53002 * 117.49725 * 39.91541 * 13 12 11 23 23 C 1.53005 * 117.49841 * 331.25628 * 13 12 11 24 24 C 1.35112 * 111.68644 * 359.91214 * 11 9 8 25 25 O 1.21239 * 127.33492 * 180.09453 * 24 11 9 26 26 C 1.38236 * 119.99759 * 0.27479 * 5 4 3 27 27 C 1.38230 * 120.00037 * 359.51242 * 26 5 4 28 28 H 1.08996 * 109.47309 * 89.99451 * 1 2 3 29 29 H 1.08994 * 109.47151 * 210.00169 * 1 2 3 30 30 H 1.09006 * 109.46608 * 329.99926 * 1 2 3 31 31 H 1.08006 * 120.00108 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00435 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47214 * 60.20539 * 7 6 5 34 34 H 1.08996 * 109.47609 * 180.21285 * 7 6 5 35 35 H 1.09001 * 109.47070 * 300.20910 * 7 6 5 36 36 H 0.97002 * 126.69128 * 61.44113 * 8 6 5 37 37 H 1.09001 * 109.47108 * 209.61781 * 12 11 9 38 38 H 1.08998 * 109.47353 * 329.61744 * 12 11 9 39 39 H 0.97001 * 119.99444 * 185.17672 * 17 16 14 40 40 H 1.09003 * 117.49753 * 359.97438 * 22 13 12 41 41 H 1.09000 * 117.49933 * 145.02123 * 22 13 12 42 42 H 1.09001 * 117.49872 * 214.97961 * 23 13 12 43 43 H 1.09000 * 117.49738 * 359.97438 * 23 13 12 44 44 H 1.07998 * 119.99462 * 179.72874 * 26 5 4 45 45 H 1.08001 * 120.00343 * 180.28204 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 -0.0001 0.0016 7 6 6.3154 0.0187 1.4342 8 7 6.2970 1.1487 -0.7612 9 6 7.0086 0.6418 -1.7841 10 8 7.5778 1.3231 -2.6142 11 7 7.0206 -0.6960 -1.7849 12 6 7.7177 -1.5121 -2.7821 13 6 9.1495 -1.7781 -2.3128 14 6 10.0335 -2.4976 -3.2986 15 1 11.0831 -2.2512 -3.3626 16 6 9.5024 -3.4705 -4.1187 17 7 8.2853 -3.9198 -3.9031 18 14 10.5116 -4.1502 -5.5361 19 1 11.2067 -5.3879 -5.1000 20 1 9.6144 -4.4623 -6.6775 21 1 11.5158 -3.1408 -5.9576 22 6 9.3624 -2.0730 -0.8266 23 6 9.8039 -0.7291 -1.4116 24 6 6.3127 -1.2023 -0.7514 25 8 6.1390 -2.3715 -0.4820 26 6 3.5805 -1.1972 -0.0036 27 6 2.1982 -1.1972 0.0003 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.9646 -0.8662 1.9653 34 1 7.4051 0.0222 1.4140 35 1 5.9587 0.9136 1.9441 36 1 6.1528 2.0876 -0.5645 37 1 7.1941 -2.4600 -2.9062 38 1 7.7400 -0.9820 -3.7342 39 1 7.9394 -4.6558 -4.4318 40 1 8.4826 -2.0771 -0.1832 41 1 10.1422 -2.7871 -0.5619 42 1 10.8740 -0.5596 -1.5315 43 1 9.2146 0.1508 -1.1534 44 1 4.1205 -2.1324 -0.0072 45 1 1.6581 -2.1324 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596237750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:05 Heat of formation + Delta-G solvation = -3.217535 kcal Electronic energy + Delta-G solvation = -29002.794493 eV Core-core repulsion = 25179.394678 eV Total energy + Delta-G solvation = -3823.399816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.76135 -40.47094 -39.62815 -38.65262 -37.44608 -35.65406 -34.27408 -33.52397 -31.92571 -31.31545 -28.96291 -27.81048 -27.54749 -25.42973 -24.01894 -23.50449 -22.88438 -22.27953 -21.39887 -20.65053 -19.13225 -18.70946 -18.07244 -17.59403 -16.92486 -16.87072 -16.47986 -16.21019 -16.02998 -15.76322 -15.57030 -15.20304 -14.98232 -14.59427 -14.42141 -14.27916 -14.10834 -13.91773 -13.54587 -13.47332 -13.22168 -13.02041 -12.86538 -12.79256 -12.74540 -12.40960 -12.29866 -12.17581 -12.03507 -11.93456 -11.78097 -11.24325 -10.99521 -10.87324 -10.67048 -10.40811 -10.07834 -9.88398 -9.54168 -8.17432 -6.28405 0.21359 0.44202 0.58542 1.25933 1.41517 1.44006 1.55198 1.98176 2.10195 2.38172 2.74871 2.85409 2.92217 3.29615 3.50275 3.76200 3.94018 4.05290 4.11279 4.11717 4.15886 4.40184 4.46191 4.47094 4.51554 4.57200 4.59392 4.67720 4.79339 4.82426 4.84229 4.86912 4.90511 5.02840 5.07447 5.14003 5.18324 5.26160 5.40402 5.43279 5.48167 5.52096 5.66956 5.75720 5.79940 6.03691 6.16839 6.24720 6.41694 6.70714 7.12079 7.34008 8.84750 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.003732 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.819932 B = 7500.621424 C = 8099.388419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.093 4.093 5 C -0.109 4.109 6 C 0.177 3.823 7 C -0.138 4.138 8 N -0.698 5.698 9 C 0.698 3.302 10 O -0.575 6.575 11 N -0.576 5.576 12 C 0.168 3.832 13 C 0.016 3.984 14 C -0.514 4.514 15 H 0.059 0.941 16 C 0.026 3.974 17 N -0.906 5.906 18 Si 0.965 3.035 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.193 4.193 23 C -0.186 4.186 24 C 0.523 3.477 25 O -0.483 6.483 26 C -0.124 4.124 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.451 0.549 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.268 0.732 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 11.066 11.922 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.111 4.111 5 C -0.110 4.110 6 C 0.086 3.914 7 C -0.196 4.196 8 N -0.364 5.364 9 C 0.400 3.600 10 O -0.451 6.451 11 N -0.321 5.321 12 C 0.048 3.952 13 C 0.015 3.985 14 C -0.552 4.552 15 H 0.078 0.922 16 C -0.175 4.175 17 N -0.543 5.543 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.231 4.231 23 C -0.223 4.223 24 C 0.311 3.689 25 O -0.354 6.354 26 C -0.143 4.143 27 C -0.145 4.145 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.299 0.701 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.135 0.865 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.854 10.630 11.427 22.247 hybrid contribution 0.917 -0.535 -0.846 1.358 sum -14.937 10.095 10.581 20.904 Atomic orbital electron populations 1.20865 0.88997 1.04042 1.03119 1.20381 0.97778 0.92796 0.97331 1.21351 0.93541 0.98731 1.00254 1.21070 0.94820 0.96844 0.98343 1.19336 0.90874 0.95248 1.05536 1.20153 0.93049 0.83155 0.95055 1.22046 1.01656 1.06110 0.89804 1.45466 1.54012 1.09357 1.27588 1.16053 0.79579 0.81803 0.82611 1.90960 1.49838 1.62251 1.42068 1.46890 1.48275 1.07994 1.28892 1.21309 0.92790 0.93984 0.87160 1.19378 0.92503 0.97196 0.89424 1.20764 0.94826 1.20774 1.18807 0.92237 1.25776 0.96223 0.96250 0.99270 1.69856 1.17356 1.26007 1.41090 0.85431 0.78495 0.78440 0.78693 1.19929 1.20315 1.19334 1.22917 1.01540 0.98361 1.00314 1.22839 0.99860 0.91726 1.07919 1.21279 0.76810 0.90415 0.80380 1.90726 1.57387 1.18520 1.68761 1.21380 0.95631 0.98024 0.99258 1.21222 0.93146 0.99103 1.01057 0.90541 0.90799 0.89738 0.82813 0.83565 0.89708 0.91628 0.86748 0.70078 0.86901 0.92526 0.92250 0.91362 0.90868 0.90206 0.90871 0.86501 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.23 0.71 -0.54 16 2 C -0.08 -1.43 5.88 -19.87 -0.12 -1.55 16 3 C -0.12 -1.90 9.70 22.27 0.22 -1.68 16 4 C -0.09 -1.66 9.35 22.27 0.21 -1.45 16 5 C -0.11 -2.62 4.89 -19.86 -0.10 -2.72 16 6 C 0.18 4.73 1.16 2.23 0.00 4.73 16 7 C -0.14 -2.88 8.96 71.98 0.64 -2.24 16 8 N -0.70 -18.28 5.33 -443.25 -2.36 -20.65 16 9 C 0.70 26.76 6.74 179.44 1.21 27.97 16 10 O -0.57 -25.82 17.19 -3.82 -0.07 -25.89 16 11 N -0.58 -24.50 1.86 -772.63 -1.44 -25.94 16 12 C 0.17 8.62 5.03 86.38 0.43 9.06 16 13 C 0.02 0.86 2.36 -52.93 -0.13 0.73 16 14 C -0.51 -29.10 9.04 25.60 0.23 -28.87 16 15 H 0.06 3.34 7.84 -2.91 -0.02 3.32 16 16 C 0.03 1.40 5.25 84.66 0.44 1.85 16 17 N -0.91 -51.50 10.77 21.45 0.23 -51.27 16 18 Si 0.96 43.55 29.55 68.60 2.03 45.58 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C -0.19 -9.36 9.63 30.62 0.29 -9.07 16 23 C -0.19 -8.70 9.56 30.62 0.29 -8.41 16 24 C 0.52 20.01 4.92 87.88 0.43 20.44 16 25 O -0.48 -21.01 14.92 -2.90 -0.04 -21.05 16 26 C -0.12 -3.33 9.18 22.27 0.20 -3.13 16 27 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 30 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 31 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.15 1.79 7.02 -2.91 -0.02 1.77 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.45 8.14 8.14 -92.71 -0.75 7.39 16 37 H 0.11 6.38 5.87 -2.39 -0.01 6.37 16 38 H 0.06 3.07 7.87 -2.39 -0.02 3.05 16 39 H 0.27 14.41 8.32 -92.71 -0.77 13.64 16 40 H 0.07 3.19 5.59 -2.39 -0.01 3.18 16 41 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 42 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 43 H 0.07 3.26 5.60 -2.39 -0.01 3.24 16 44 H 0.12 3.72 5.69 -2.91 -0.02 3.70 16 45 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -70.84 365.36 3.83 -67.01 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.27 Total: 29.60 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.21 Total: 2.59 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -3.57 Total: -97.85 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.11 Total: -46.94 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.84 3.83 -67.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596237750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.794 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds