Wall clock time and date at job start Tue Mar 31 2020 14:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38244 * 119.99935 * 2 1 4 4 C 1.38236 * 119.99966 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.99900 * 359.96186 * 4 3 2 6 6 C 1.50703 * 119.99828 * 179.97438 * 5 4 3 7 7 C 1.52998 * 110.53374 * 254.97282 * 6 5 4 8 8 N 1.47305 * 110.59855 * 17.80698 * 6 5 4 9 9 C 1.34533 * 106.61943 * 118.52591 * 8 6 5 10 10 O 1.21538 * 123.76902 * 179.97438 * 9 8 6 11 11 N 1.33784 * 112.45844 * 0.02562 * 9 8 6 12 12 C 1.46503 * 124.18140 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46539 * 84.78678 * 12 11 9 14 14 C 1.50697 * 115.56365 * 268.81939 * 13 12 11 15 15 H 1.08004 * 119.99980 * 140.05634 * 14 13 12 16 16 C 1.37877 * 120.00321 * 320.06036 * 14 13 12 17 17 N 1.31511 * 120.00302 * 169.97751 * 16 14 13 18 18 Si 1.86805 * 119.99589 * 349.98157 * 16 14 13 19 19 H 1.48498 * 109.47394 * 94.00999 * 18 16 14 20 20 H 1.48502 * 109.46979 * 214.00715 * 18 16 14 21 21 H 1.48495 * 109.47375 * 334.00343 * 18 16 14 22 22 C 1.52993 * 117.50108 * 54.51538 * 13 12 11 23 23 C 1.53002 * 60.00278 * 107.48274 * 22 13 12 24 24 C 1.34773 * 111.64287 * 0.22587 * 11 9 8 25 25 O 1.21238 * 127.15693 * 179.73440 * 24 11 9 26 26 C 1.38239 * 120.00458 * 0.26687 * 5 4 3 27 27 C 1.38235 * 120.00308 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46576 * 89.99814 * 1 2 3 29 29 H 1.08992 * 109.46972 * 210.00282 * 1 2 3 30 30 H 1.09005 * 109.47222 * 330.00253 * 1 2 3 31 31 H 1.07995 * 119.99933 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.99923 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46889 * 182.12931 * 7 6 5 34 34 H 1.08992 * 109.47784 * 302.13064 * 7 6 5 35 35 H 1.08999 * 109.46802 * 62.13274 * 7 6 5 36 36 H 0.97003 * 126.69064 * 298.48866 * 8 6 5 37 37 H 1.08998 * 109.46852 * 324.79312 * 12 11 9 38 38 H 1.08988 * 109.47386 * 204.78601 * 12 11 9 39 39 H 0.97003 * 119.99698 * 185.00583 * 17 16 14 40 40 H 1.09004 * 117.49749 * 359.97438 * 22 13 12 41 41 H 1.08996 * 117.50193 * 214.97293 * 22 13 12 42 42 H 1.09007 * 117.49398 * 107.48250 * 23 22 13 43 43 H 1.08992 * 117.50366 * 252.51061 * 23 22 13 44 44 H 1.07995 * 120.00395 * 179.72956 * 26 5 4 45 45 H 1.08000 * 119.99352 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 0.0019 6 6 5.7787 0.0002 0.0019 7 6 6.3154 -0.3729 -1.3815 8 7 6.2970 1.3135 0.4221 9 6 7.0086 1.1051 1.5446 10 8 7.5778 1.9871 2.1572 11 7 7.0207 -0.1817 1.9106 12 6 7.7178 -0.6947 3.0926 13 6 6.8200 -0.5387 4.3217 14 6 6.9825 0.7497 5.0863 15 1 6.1146 1.2550 5.4836 16 6 8.2392 1.2834 5.2787 17 7 8.3703 2.4969 5.7684 18 14 9.7555 0.2828 4.8436 19 1 10.1896 0.6167 3.4633 20 1 10.8488 0.6010 5.7969 21 1 9.4336 -1.1645 4.9249 22 6 5.4185 -1.1485 4.2548 23 6 6.4956 -1.8003 5.1242 24 6 6.3169 -0.9486 1.0545 25 8 6.1478 -2.1476 1.1148 26 6 3.5806 -1.1971 -0.0029 27 6 2.1983 -1.1971 0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 7.4045 -0.4045 -1.3522 34 1 5.9311 -1.3515 -1.6686 35 1 5.9930 0.3719 -2.1092 36 1 6.1536 2.1628 -0.0239 37 1 8.6400 -0.1334 3.2427 38 1 7.9536 -1.7487 2.9464 39 1 9.2500 2.9001 5.8360 40 1 5.1357 -1.6605 3.3350 41 1 4.6139 -0.6178 4.7638 42 1 6.3997 -1.6983 6.2052 43 1 6.9216 -2.7414 4.7765 44 1 4.1206 -2.1324 -0.0063 45 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596238118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:09 Heat of formation + Delta-G solvation = 27.683830 kcal Electronic energy + Delta-G solvation = -29440.790807 eV Core-core repulsion = 25618.730974 eV Total energy + Delta-G solvation = -3822.059832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.30658 -39.40938 -38.15795 -37.19322 -35.95464 -34.36435 -32.50934 -32.08328 -31.11005 -30.24457 -27.87506 -27.00251 -25.41577 -24.12034 -22.91955 -22.25171 -21.51861 -20.90852 -20.10463 -19.02781 -17.86328 -17.13764 -16.59544 -15.86189 -15.73673 -15.64174 -15.23405 -14.89784 -14.67430 -14.58403 -14.09182 -13.79841 -13.72061 -13.64789 -13.40714 -13.07536 -12.94517 -12.60939 -12.38770 -12.35354 -12.31045 -12.10394 -11.99637 -11.34275 -11.13288 -10.96495 -10.66033 -10.55616 -10.30783 -10.04462 -9.78619 -9.66828 -9.27801 -9.20702 -9.01074 -8.97674 -8.70130 -8.61201 -8.29257 -6.02550 -3.97435 1.13706 1.34733 1.96570 2.60416 3.23081 3.29476 3.36167 3.40233 3.60975 3.68641 4.12906 4.31810 4.42338 4.70442 4.78185 4.82446 4.85918 4.97358 5.20374 5.30999 5.34203 5.39905 5.40723 5.43633 5.46983 5.62054 5.66323 5.77143 5.79675 5.89692 5.93830 5.94814 6.02068 6.05498 6.21897 6.31561 6.45764 6.50211 6.51606 6.59293 6.73275 6.89619 6.95036 7.10084 7.17876 7.55107 7.71506 7.80886 8.56369 8.67893 8.98088 9.59810 11.09331 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.004590 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.326545 B = 6099.019895 C = 6319.620090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.091 4.091 5 C -0.094 4.094 6 C 0.165 3.835 7 C -0.140 4.140 8 N -0.730 5.730 9 C 0.695 3.305 10 O -0.493 6.493 11 N -0.554 5.554 12 C 0.141 3.859 13 C -0.009 4.009 14 C -0.480 4.480 15 H 0.075 0.925 16 C 0.094 3.906 17 N -0.883 5.883 18 Si 0.870 3.130 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.260 1.260 22 C -0.182 4.182 23 C -0.196 4.196 24 C 0.534 3.466 25 O -0.476 6.476 26 C -0.095 4.095 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.434 0.566 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.265 0.735 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.135 0.865 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 -5.725 -17.277 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.109 4.109 5 C -0.096 4.096 6 C 0.074 3.926 7 C -0.198 4.198 8 N -0.397 5.397 9 C 0.396 3.604 10 O -0.361 6.361 11 N -0.298 5.298 12 C 0.021 3.979 13 C -0.011 4.011 14 C -0.516 4.516 15 H 0.093 0.907 16 C -0.110 4.110 17 N -0.519 5.519 18 Si 0.701 3.299 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.185 1.185 22 C -0.220 4.220 23 C -0.234 4.234 24 C 0.320 3.680 25 O -0.347 6.347 26 C -0.113 4.113 27 C -0.137 4.137 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.278 0.722 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.153 0.847 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.060 -5.774 -16.629 20.275 hybrid contribution 0.760 0.001 -0.338 0.831 sum -9.301 -5.773 -16.967 20.191 Atomic orbital electron populations 1.20800 0.91204 1.02935 1.02187 1.19985 0.96115 0.93257 0.98869 1.20980 0.93814 0.97668 1.01405 1.20873 0.94156 0.97297 0.98585 1.19418 0.91961 0.94452 1.03724 1.20057 0.92256 0.84133 0.96193 1.21976 1.01844 1.03350 0.92636 1.45630 1.56173 1.09204 1.28670 1.15906 0.80457 0.83028 0.81045 1.91152 1.46121 1.43895 1.54951 1.46324 1.48568 1.08871 1.26010 1.21946 0.95520 0.98120 0.82264 1.19660 0.93305 0.94467 0.93636 1.20126 0.94258 1.03315 1.33926 0.90679 1.24808 0.98359 0.94257 0.93559 1.69822 1.23872 1.13296 1.44915 0.87145 0.83661 0.81731 0.77378 1.20427 1.22022 1.18514 1.22717 0.93265 1.05123 1.00887 1.23184 1.04915 0.97061 0.98277 1.20522 0.77361 0.87790 0.82318 1.90710 1.57553 1.12102 1.74369 1.21140 0.94372 0.97893 0.97918 1.20988 0.93814 0.97619 1.01285 0.91207 0.91477 0.91479 0.85839 0.85838 0.91149 0.89948 0.90368 0.72187 0.89460 0.90227 0.92509 0.90926 0.90034 0.89277 0.91221 0.84726 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.08 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 4 C -0.09 -1.09 9.36 -39.59 -0.37 -1.46 16 5 C -0.09 -1.23 4.82 -104.62 -0.50 -1.73 16 6 C 0.17 2.25 1.15 -133.25 -0.15 2.10 16 7 C -0.14 -1.41 8.92 37.16 0.33 -1.08 16 8 N -0.73 -10.72 5.00 -54.03 -0.27 -10.99 16 9 C 0.70 14.24 8.62 -88.02 -0.76 13.49 16 10 O -0.49 -12.43 17.56 5.33 0.09 -12.34 16 11 N -0.55 -11.34 2.41 -120.73 -0.29 -11.63 16 12 C 0.14 3.22 4.42 -4.04 -0.02 3.20 16 13 C -0.01 -0.22 1.42 -155.66 -0.22 -0.44 16 14 C -0.48 -13.85 9.56 -34.44 -0.33 -14.18 16 15 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 16 C 0.09 2.77 5.43 -17.82 -0.10 2.68 16 17 N -0.88 -27.61 13.95 55.43 0.77 -26.83 16 18 Si 0.87 22.22 24.33 -169.99 -4.14 18.09 16 19 H -0.28 -6.99 6.75 56.52 0.38 -6.61 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.26 -6.19 6.74 56.52 0.38 -5.81 16 22 C -0.18 -4.03 9.65 -26.73 -0.26 -4.29 16 23 C -0.20 -4.30 9.88 -26.73 -0.26 -4.56 16 24 C 0.53 9.33 5.85 -10.55 -0.06 9.27 16 25 O -0.48 -8.67 15.38 5.59 0.09 -8.58 16 26 C -0.09 -1.20 9.09 -39.58 -0.36 -1.56 16 27 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.33 6.63 -52.49 -0.35 0.98 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.43 5.01 8.09 -40.82 -0.33 4.68 16 37 H 0.09 2.16 2.41 -51.93 -0.13 2.04 16 38 H 0.08 1.66 7.63 -51.94 -0.40 1.26 16 39 H 0.26 7.82 8.32 -40.82 -0.34 7.48 16 40 H 0.07 1.54 6.57 -51.93 -0.34 1.20 16 41 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.09 1.95 8.14 -51.92 -0.42 1.52 16 43 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 44 H 0.13 1.73 6.63 -52.49 -0.35 1.38 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -34.52 366.17 -8.44 -42.96 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.13 Total: 7.82 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.09 Total: -4.01 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.21 Total: -49.45 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.18 Total: -20.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.52 -8.44 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596238118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.641 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds