Wall clock time and date at job start Tue Mar 31 2020 14:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38244 * 119.99935 * 2 1 4 4 C 1.38236 * 119.99966 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.99900 * 359.96186 * 4 3 2 6 6 C 1.50703 * 119.99828 * 179.97438 * 5 4 3 7 7 C 1.52998 * 110.53374 * 254.97282 * 6 5 4 8 8 N 1.47305 * 110.59855 * 17.80698 * 6 5 4 9 9 C 1.34533 * 106.61943 * 118.52591 * 8 6 5 10 10 O 1.21538 * 123.76902 * 179.97438 * 9 8 6 11 11 N 1.33784 * 112.45844 * 0.02562 * 9 8 6 12 12 C 1.46503 * 124.18140 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46539 * 84.78678 * 12 11 9 14 14 C 1.50697 * 115.56365 * 268.81939 * 13 12 11 15 15 H 1.08004 * 119.99980 * 140.05634 * 14 13 12 16 16 C 1.37877 * 120.00321 * 320.06036 * 14 13 12 17 17 N 1.31511 * 120.00302 * 169.97751 * 16 14 13 18 18 Si 1.86805 * 119.99589 * 349.98157 * 16 14 13 19 19 H 1.48498 * 109.47394 * 94.00999 * 18 16 14 20 20 H 1.48502 * 109.46979 * 214.00715 * 18 16 14 21 21 H 1.48495 * 109.47375 * 334.00343 * 18 16 14 22 22 C 1.52993 * 117.50108 * 54.51538 * 13 12 11 23 23 C 1.53002 * 60.00278 * 107.48274 * 22 13 12 24 24 C 1.34773 * 111.64287 * 0.22587 * 11 9 8 25 25 O 1.21238 * 127.15693 * 179.73440 * 24 11 9 26 26 C 1.38239 * 120.00458 * 0.26687 * 5 4 3 27 27 C 1.38235 * 120.00308 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46576 * 89.99814 * 1 2 3 29 29 H 1.08992 * 109.46972 * 210.00282 * 1 2 3 30 30 H 1.09005 * 109.47222 * 330.00253 * 1 2 3 31 31 H 1.07995 * 119.99933 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.99923 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46889 * 182.12931 * 7 6 5 34 34 H 1.08992 * 109.47784 * 302.13064 * 7 6 5 35 35 H 1.08999 * 109.46802 * 62.13274 * 7 6 5 36 36 H 0.97003 * 126.69064 * 298.48866 * 8 6 5 37 37 H 1.08998 * 109.46852 * 324.79312 * 12 11 9 38 38 H 1.08988 * 109.47386 * 204.78601 * 12 11 9 39 39 H 0.97003 * 119.99698 * 185.00583 * 17 16 14 40 40 H 1.09004 * 117.49749 * 359.97438 * 22 13 12 41 41 H 1.08996 * 117.50193 * 214.97293 * 22 13 12 42 42 H 1.09007 * 117.49398 * 107.48250 * 23 22 13 43 43 H 1.08992 * 117.50366 * 252.51061 * 23 22 13 44 44 H 1.07995 * 120.00395 * 179.72956 * 26 5 4 45 45 H 1.08000 * 119.99352 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 0.0019 6 6 5.7787 0.0002 0.0019 7 6 6.3154 -0.3729 -1.3815 8 7 6.2970 1.3135 0.4221 9 6 7.0086 1.1051 1.5446 10 8 7.5778 1.9871 2.1572 11 7 7.0207 -0.1817 1.9106 12 6 7.7178 -0.6947 3.0926 13 6 6.8200 -0.5387 4.3217 14 6 6.9825 0.7497 5.0863 15 1 6.1146 1.2550 5.4836 16 6 8.2392 1.2834 5.2787 17 7 8.3703 2.4969 5.7684 18 14 9.7555 0.2828 4.8436 19 1 10.1896 0.6167 3.4633 20 1 10.8488 0.6010 5.7969 21 1 9.4336 -1.1645 4.9249 22 6 5.4185 -1.1485 4.2548 23 6 6.4956 -1.8003 5.1242 24 6 6.3169 -0.9486 1.0545 25 8 6.1478 -2.1476 1.1148 26 6 3.5806 -1.1971 -0.0029 27 6 2.1983 -1.1971 0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 7.4045 -0.4045 -1.3522 34 1 5.9311 -1.3515 -1.6686 35 1 5.9930 0.3719 -2.1092 36 1 6.1536 2.1628 -0.0239 37 1 8.6400 -0.1334 3.2427 38 1 7.9536 -1.7487 2.9464 39 1 9.2500 2.9001 5.8360 40 1 5.1357 -1.6605 3.3350 41 1 4.6139 -0.6178 4.7638 42 1 6.3997 -1.6983 6.2052 43 1 6.9216 -2.7414 4.7765 44 1 4.1206 -2.1324 -0.0063 45 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596238118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:08 Heat of formation + Delta-G solvation = 5.348582 kcal Electronic energy + Delta-G solvation = -29441.759336 eV Core-core repulsion = 25618.730974 eV Total energy + Delta-G solvation = -3823.028361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.70078 -40.41228 -39.63577 -38.88694 -37.41429 -35.81739 -34.30087 -33.54935 -31.98605 -31.22837 -29.59411 -27.77284 -27.48494 -25.38440 -23.96723 -23.44128 -23.21858 -22.17793 -21.34258 -20.93962 -19.24641 -18.64500 -18.28265 -17.37568 -17.29780 -16.87383 -16.49497 -16.36466 -16.01020 -15.76398 -15.48796 -15.18915 -14.99639 -14.93760 -14.50748 -14.40597 -14.30520 -14.09017 -13.93176 -13.49109 -13.21564 -13.03426 -12.96576 -12.79607 -12.58086 -12.31344 -12.24854 -12.07180 -11.93247 -11.78242 -11.72587 -11.22460 -11.16635 -10.88715 -10.63491 -10.49945 -10.36678 -9.86143 -9.50597 -8.28097 -6.26768 0.21460 0.46554 0.59818 1.13411 1.22039 1.31351 1.39319 2.04184 2.12033 2.30522 2.72137 2.87491 2.91934 3.28675 3.40681 3.68590 3.80040 3.95400 3.97272 4.06400 4.11968 4.13254 4.32531 4.35393 4.42353 4.48626 4.52609 4.61983 4.72083 4.73857 4.80466 4.85115 4.86898 4.91480 4.95083 5.05514 5.12903 5.15258 5.26428 5.40966 5.45019 5.52666 5.66238 5.68045 5.83487 6.04879 6.11743 6.26830 6.32407 6.67990 7.18296 7.34126 8.87745 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.004590 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.326545 B = 6099.019895 C = 6319.620090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.128 4.128 4 C -0.103 4.103 5 C -0.110 4.110 6 C 0.175 3.825 7 C -0.136 4.136 8 N -0.705 5.705 9 C 0.691 3.309 10 O -0.554 6.554 11 N -0.566 5.566 12 C 0.142 3.858 13 C -0.037 4.037 14 C -0.480 4.480 15 H 0.024 0.976 16 C 0.042 3.958 17 N -0.936 5.936 18 Si 0.928 3.072 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.227 1.227 22 C -0.168 4.168 23 C -0.176 4.176 24 C 0.530 3.470 25 O -0.481 6.481 26 C -0.106 4.106 27 C -0.125 4.125 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.448 0.552 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.264 0.736 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.131 0.869 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 -8.166 -19.679 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.121 4.121 5 C -0.112 4.112 6 C 0.085 3.915 7 C -0.194 4.194 8 N -0.372 5.372 9 C 0.391 3.609 10 O -0.427 6.427 11 N -0.310 5.310 12 C 0.021 3.979 13 C -0.038 4.038 14 C -0.517 4.517 15 H 0.042 0.958 16 C -0.157 4.157 17 N -0.574 5.574 18 Si 0.755 3.245 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.150 1.150 22 C -0.205 4.205 23 C -0.214 4.214 24 C 0.318 3.682 25 O -0.352 6.352 26 C -0.124 4.124 27 C -0.143 4.143 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.296 0.704 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.149 0.851 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.321 -8.263 -19.096 23.687 hybrid contribution 0.908 0.765 0.380 1.246 sum -10.413 -7.499 -18.716 22.692 Atomic orbital electron populations 1.20861 0.89143 1.03594 1.03435 1.20359 0.97712 0.92862 0.97421 1.21284 0.93584 0.98847 1.00898 1.21049 0.94919 0.97270 0.98841 1.19391 0.91186 0.95137 1.05442 1.20209 0.92907 0.81861 0.96561 1.22049 1.01814 1.04872 0.90633 1.45505 1.54282 1.10709 1.26731 1.16147 0.80421 0.82546 0.81787 1.91115 1.48930 1.45443 1.57176 1.46370 1.49218 1.09355 1.26040 1.21730 0.94486 0.99149 0.82509 1.19572 0.95737 0.93644 0.94878 1.20179 0.92546 1.05073 1.33881 0.95755 1.25566 1.01615 0.95034 0.93505 1.69980 1.24490 1.15524 1.47450 0.86206 0.79484 0.82006 0.76787 1.20501 1.22127 1.14957 1.22638 0.92095 1.04376 1.01410 1.23218 1.03401 0.96684 0.98080 1.21135 0.76607 0.88113 0.82385 1.90698 1.57504 1.12439 1.74603 1.21193 0.95129 0.97494 0.98572 1.21269 0.93432 0.98824 1.00744 0.89557 0.90760 0.90933 0.84031 0.85233 0.91104 0.88712 0.87661 0.70440 0.91527 0.87740 0.92710 0.89540 0.91106 0.89512 0.88096 0.85112 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.70 16 2 C -0.08 -1.54 5.88 -19.86 -0.12 -1.66 16 3 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 4 C -0.10 -2.28 9.36 22.27 0.21 -2.08 16 5 C -0.11 -2.65 4.82 -19.87 -0.10 -2.75 16 6 C 0.18 4.43 1.15 2.24 0.00 4.43 16 7 C -0.14 -2.34 8.92 71.98 0.64 -1.70 16 8 N -0.71 -20.05 5.00 -443.26 -2.22 -22.27 16 9 C 0.69 28.44 8.62 179.44 1.55 29.99 16 10 O -0.55 -28.94 17.56 -3.84 -0.07 -29.01 16 11 N -0.57 -22.69 2.41 -773.12 -1.87 -24.56 16 12 C 0.14 6.29 4.42 86.38 0.38 6.67 16 13 C -0.04 -1.77 1.42 -52.93 -0.08 -1.85 16 14 C -0.48 -28.71 9.56 25.60 0.24 -28.46 16 15 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 16 C 0.04 2.55 5.43 84.66 0.46 3.01 16 17 N -0.94 -61.43 13.95 21.45 0.30 -61.13 16 18 Si 0.93 46.50 24.33 68.60 1.67 48.17 16 19 H -0.28 -13.82 6.75 99.48 0.67 -13.15 16 20 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 21 H -0.23 -9.98 6.74 99.48 0.67 -9.31 16 22 C -0.17 -7.21 9.65 30.59 0.30 -6.91 16 23 C -0.18 -7.29 9.88 30.60 0.30 -6.99 16 24 C 0.53 17.54 5.85 87.94 0.51 18.05 16 25 O -0.48 -16.33 15.38 -2.90 -0.04 -16.37 16 26 C -0.11 -2.44 9.09 22.27 0.20 -2.23 16 27 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.83 8.08 -2.39 -0.02 0.82 16 30 H 0.07 0.84 8.09 -2.38 -0.02 0.82 16 31 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.13 2.60 6.63 -2.91 -0.02 2.58 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.46 8.11 -2.39 -0.02 1.44 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.45 9.89 8.09 -92.71 -0.75 9.14 16 37 H 0.07 3.25 2.41 -2.39 -0.01 3.25 16 38 H 0.10 4.04 7.63 -2.39 -0.02 4.02 16 39 H 0.26 16.38 8.32 -92.71 -0.77 15.61 16 40 H 0.09 3.47 6.57 -2.39 -0.02 3.46 16 41 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.09 3.64 8.14 -2.38 -0.02 3.62 16 43 H 0.10 3.60 8.03 -2.39 -0.02 3.58 16 44 H 0.13 3.07 6.63 -2.91 -0.02 3.05 16 45 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -79.09 366.17 3.64 -75.45 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.20 Total: 27.47 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.66 Total: 2.24 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -3.78 Total: -107.95 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.11 Total: -45.38 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.67 Total: 48.17 kcal Total: -79.09 3.64 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596238118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.797 kcal (2) G-P(sol) polarization free energy of solvation -79.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds