Wall clock time and date at job start Tue Mar 31 2020 14:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 120.00179 * 2 1 4 4 C 1.38214 * 120.00268 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99781 * 0.09023 * 4 3 2 6 6 C 1.38216 * 120.00360 * 359.85656 * 5 4 3 7 7 C 1.38211 * 120.00084 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00257 * 0.02562 * 7 2 1 9 9 C 1.52999 * 110.53157 * 304.81864 * 8 7 2 10 10 N 1.47313 * 110.59882 * 67.64769 * 8 7 2 11 11 C 1.34865 * 106.43986 * 118.47948 * 10 8 7 12 12 O 1.21536 * 123.72588 * 180.02562 * 11 10 8 13 13 N 1.33789 * 112.50008 * 0.13811 * 11 10 8 14 14 C 1.46499 * 124.17495 * 179.87429 * 13 11 10 15 15 C 1.52997 * 109.46989 * 267.06359 * 14 13 11 16 16 C 1.50701 * 115.55441 * 278.93391 * 15 14 13 17 17 H 1.07997 * 120.00237 * 143.84050 * 16 15 14 18 18 C 1.37875 * 119.99703 * 323.84094 * 16 15 14 19 19 N 1.31508 * 120.00544 * 337.62546 * 18 16 15 20 20 Si 1.86801 * 119.99744 * 157.62952 * 18 16 15 21 21 H 1.48501 * 109.47173 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47431 * 119.99811 * 20 18 16 23 23 H 1.48501 * 109.47221 * 239.99677 * 20 18 16 24 24 C 1.53007 * 117.49704 * 133.22821 * 15 14 13 25 25 C 1.52996 * 60.00086 * 252.51122 * 24 15 14 26 26 C 1.34769 * 111.64708 * 359.91120 * 13 11 10 27 27 O 1.21232 * 127.16271 * 180.02562 * 26 13 11 28 28 H 1.08994 * 109.47416 * 272.94815 * 1 2 3 29 29 H 1.08998 * 109.46726 * 32.95432 * 1 2 3 30 30 H 1.08999 * 109.46900 * 152.94943 * 1 2 3 31 31 H 1.07999 * 119.99913 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.99806 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.00014 * 179.97438 * 5 4 3 34 34 H 1.08003 * 120.00251 * 180.37153 * 6 5 4 35 35 H 1.08996 * 109.47072 * 67.58304 * 9 8 7 36 36 H 1.09000 * 109.47021 * 187.58052 * 9 8 7 37 37 H 1.09002 * 109.47066 * 307.58176 * 9 8 7 38 38 H 0.97008 * 126.68829 * 298.47870 * 10 8 7 39 39 H 1.08996 * 109.47166 * 27.06772 * 14 13 11 40 40 H 1.09005 * 109.46637 * 147.07087 * 14 13 11 41 41 H 0.96998 * 120.00779 * 185.04948 * 19 18 16 42 42 H 1.08999 * 117.49756 * 359.97438 * 24 15 14 43 43 H 1.08998 * 117.50086 * 145.02176 * 24 15 14 44 44 H 1.09005 * 117.50098 * 252.51360 * 25 24 15 45 45 H 1.08999 * 117.50572 * 107.48648 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 -0.0008 6 6 3.5807 -1.1969 0.0003 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0005 9 6 0.4674 -2.5575 1.1765 10 7 0.7318 -2.6890 -1.2750 11 6 1.2408 -3.8045 -1.8367 12 8 0.8732 -4.2495 -2.9063 13 7 2.1931 -4.3678 -1.0845 14 6 2.9147 -5.5894 -1.4493 15 6 2.2060 -6.8012 -0.8410 16 6 2.5131 -7.0738 0.6090 17 1 1.7397 -7.4469 1.2639 18 6 3.7815 -6.8469 1.0994 19 7 4.8095 -6.8254 0.2795 20 14 4.0399 -6.5700 2.9286 21 1 2.7328 -6.6423 3.6297 22 1 4.9480 -7.6159 3.4642 23 1 4.6444 -5.2311 3.1461 24 6 1.9620 -8.0071 -1.7507 25 6 0.7918 -7.1137 -1.3345 26 6 2.4060 -3.6730 0.0504 27 8 3.2014 -3.9304 0.9284 28 1 -0.3634 0.0529 1.0262 29 1 -0.3633 0.8623 -0.5590 30 1 -0.3633 -0.9152 -0.4674 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 -0.0008 34 1 4.1207 -2.1323 0.0053 35 1 -0.3244 -1.8238 1.0257 36 1 0.0315 -3.5546 1.2399 37 1 0.9989 -2.3337 2.1014 38 1 0.0343 -2.1209 -1.6379 39 1 2.9367 -5.6882 -2.5345 40 1 3.9347 -5.5362 -1.0685 41 1 5.7092 -6.7390 0.6316 42 1 2.3061 -7.9368 -2.7826 43 1 2.0238 -8.9978 -1.3005 44 1 0.0837 -7.5167 -0.6103 45 1 0.3664 -6.4558 -2.0923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596266479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:15 Heat of formation + Delta-G solvation = 27.589299 kcal Electronic energy + Delta-G solvation = -29852.330199 eV Core-core repulsion = 26030.266267 eV Total energy + Delta-G solvation = -3822.063931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.19329 -39.46929 -37.88307 -36.80598 -35.82388 -34.21643 -32.69413 -32.13658 -31.40414 -29.34022 -27.61706 -26.80620 -25.41928 -24.11554 -22.80547 -21.87689 -21.18664 -20.93927 -20.09187 -18.85160 -17.51955 -17.02056 -16.28849 -15.98050 -15.65776 -15.50799 -14.84134 -14.76243 -14.66870 -14.49731 -14.16242 -13.78872 -13.60746 -13.39763 -13.18871 -13.02447 -12.89684 -12.68293 -12.18969 -12.06651 -11.76268 -11.64322 -11.30250 -11.18761 -11.12278 -10.88415 -10.67347 -10.43868 -10.32810 -10.09936 -9.90201 -9.49148 -9.25134 -9.03300 -8.92462 -8.74781 -8.72436 -8.52490 -8.01054 -6.08895 -4.01486 1.15836 1.30717 2.24581 2.83680 3.33795 3.48070 3.49181 3.51166 3.67435 3.73560 4.27169 4.46776 4.48526 4.70315 4.78667 4.96450 5.04415 5.07341 5.09217 5.35095 5.38997 5.47034 5.55435 5.59371 5.66294 5.67012 5.80433 5.91038 6.00943 6.10663 6.13195 6.30103 6.35548 6.38879 6.46253 6.48682 6.51750 6.76754 6.80068 6.89278 7.01859 7.08955 7.13673 7.33947 7.42780 7.79416 7.96067 8.11885 8.44137 8.68665 8.89382 9.57258 10.96765 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.005552 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.817190 B = 5041.977489 C = 6073.975848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.096 4.096 7 C -0.084 4.084 8 C 0.161 3.839 9 C -0.156 4.156 10 N -0.728 5.728 11 C 0.702 3.298 12 O -0.551 6.551 13 N -0.552 5.552 14 C 0.143 3.857 15 C 0.036 3.964 16 C -0.500 4.500 17 H 0.059 0.941 18 C 0.097 3.903 19 N -0.870 5.870 20 Si 0.888 3.112 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.272 1.272 24 C -0.190 4.190 25 C -0.209 4.209 26 C 0.534 3.466 27 O -0.434 6.434 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.429 0.571 39 H 0.062 0.938 40 H 0.137 0.863 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 16.883 -0.151 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.129 4.129 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.085 4.085 8 C 0.070 3.930 9 C -0.214 4.214 10 N -0.394 5.394 11 C 0.403 3.597 12 O -0.426 6.426 13 N -0.296 5.296 14 C 0.024 3.976 15 C 0.035 3.965 16 C -0.536 4.536 17 H 0.077 0.923 18 C -0.108 4.108 19 N -0.506 5.506 20 Si 0.716 3.284 21 H -0.201 1.201 22 H -0.219 1.219 23 H -0.197 1.197 24 C -0.229 4.229 25 C -0.247 4.247 26 C 0.318 3.682 27 O -0.301 6.301 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.274 0.726 39 H 0.081 0.919 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.059 16.450 -0.264 17.213 hybrid contribution -0.153 0.260 0.745 0.804 sum -5.212 16.710 0.481 17.511 Atomic orbital electron populations 1.21138 0.91386 1.02703 1.02761 1.19596 0.95852 0.92145 0.99085 1.20943 0.94252 0.97099 1.01894 1.21168 0.94316 0.98004 0.99457 1.21134 1.00144 0.92118 1.00512 1.21380 0.93454 0.99433 0.97167 1.19334 0.93616 0.92441 1.03150 1.20192 0.92876 0.92945 0.87004 1.22289 0.98677 1.04292 0.96107 1.45909 1.42551 1.28925 1.22032 1.16120 0.79508 0.80366 0.83660 1.90928 1.64085 1.66684 1.20915 1.46447 1.35918 1.26865 1.20344 1.21760 0.98504 0.79363 0.98016 1.19209 0.91685 0.91192 0.94418 1.20365 0.96115 1.45501 0.91616 0.92319 1.24739 0.95457 0.92850 0.97738 1.69808 0.98590 1.47383 1.34844 0.86621 0.78033 0.78231 0.85547 1.20101 1.21878 1.19748 1.22941 1.03913 0.97154 0.98878 1.22929 0.92757 1.05374 1.03623 1.20203 0.83121 0.82910 0.81977 1.90798 1.33974 1.69673 1.35647 0.90346 0.91241 0.91228 0.85908 0.85998 0.85751 0.85068 0.89726 0.90707 0.90053 0.72564 0.91933 0.84586 0.92688 0.91644 0.90242 0.91052 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.06 36.00 0.29 -0.70 16 2 C -0.07 -0.73 5.77 -104.62 -0.60 -1.33 16 3 C -0.12 -1.23 9.71 -39.58 -0.38 -1.62 16 4 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 5 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 6 C -0.10 -1.44 9.07 -39.58 -0.36 -1.79 16 7 C -0.08 -1.17 5.06 -104.62 -0.53 -1.70 16 8 C 0.16 2.44 0.83 -133.24 -0.11 2.33 16 9 C -0.16 -2.03 8.41 37.16 0.31 -1.71 16 10 N -0.73 -10.77 5.46 -53.93 -0.29 -11.07 16 11 C 0.70 13.62 8.33 -87.72 -0.73 12.89 16 12 O -0.55 -12.01 16.20 5.33 0.09 -11.93 16 13 N -0.55 -11.65 2.56 -120.63 -0.31 -11.96 16 14 C 0.14 3.39 5.38 -4.04 -0.02 3.37 16 15 C 0.04 0.91 1.93 -155.66 -0.30 0.60 16 16 C -0.50 -13.62 8.97 -34.44 -0.31 -13.93 16 17 H 0.06 1.64 7.91 -52.49 -0.42 1.23 16 18 C 0.10 2.62 3.92 -17.82 -0.07 2.55 16 19 N -0.87 -23.87 11.20 55.43 0.62 -23.25 16 20 Si 0.89 21.98 28.62 -169.99 -4.86 17.11 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 24 C -0.19 -4.48 9.88 -26.73 -0.26 -4.74 16 25 C -0.21 -4.83 9.79 -26.73 -0.26 -5.10 16 26 C 0.53 10.71 5.63 -10.55 -0.06 10.65 16 27 O -0.43 -9.94 14.39 5.60 0.08 -9.86 16 28 H 0.08 0.55 7.45 -51.93 -0.39 0.16 16 29 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.07 0.57 3.80 -51.93 -0.20 0.37 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.13 2.27 5.80 -52.48 -0.30 1.97 16 35 H 0.08 0.81 4.48 -51.93 -0.23 0.58 16 36 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.43 5.00 7.07 -40.82 -0.29 4.71 16 39 H 0.06 1.45 7.59 -51.93 -0.39 1.06 16 40 H 0.14 3.53 5.38 -51.93 -0.28 3.25 16 41 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 42 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 43 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 45 H 0.08 1.79 6.66 -51.93 -0.35 1.44 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -31.26 357.94 -9.26 -40.52 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.78 Total: 8.70 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -4.20 Total: -3.67 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.02 Total: -46.27 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.17 Total: -21.79 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.86 Total: 17.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.26 -9.26 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.110 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds