Wall clock time and date at job start Tue Mar 31 2020 14:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 120.00179 * 2 1 4 4 C 1.38214 * 120.00268 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99781 * 0.09023 * 4 3 2 6 6 C 1.38216 * 120.00360 * 359.85656 * 5 4 3 7 7 C 1.38211 * 120.00084 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00257 * 0.02562 * 7 2 1 9 9 C 1.52999 * 110.53157 * 304.81864 * 8 7 2 10 10 N 1.47313 * 110.59882 * 67.64769 * 8 7 2 11 11 C 1.34865 * 106.43986 * 118.47948 * 10 8 7 12 12 O 1.21536 * 123.72588 * 180.02562 * 11 10 8 13 13 N 1.33789 * 112.50008 * 0.13811 * 11 10 8 14 14 C 1.46499 * 124.17495 * 179.87429 * 13 11 10 15 15 C 1.52997 * 109.46989 * 267.06359 * 14 13 11 16 16 C 1.50701 * 115.55441 * 278.93391 * 15 14 13 17 17 H 1.07997 * 120.00237 * 143.84050 * 16 15 14 18 18 C 1.37875 * 119.99703 * 323.84094 * 16 15 14 19 19 N 1.31508 * 120.00544 * 337.62546 * 18 16 15 20 20 Si 1.86801 * 119.99744 * 157.62952 * 18 16 15 21 21 H 1.48501 * 109.47173 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47431 * 119.99811 * 20 18 16 23 23 H 1.48501 * 109.47221 * 239.99677 * 20 18 16 24 24 C 1.53007 * 117.49704 * 133.22821 * 15 14 13 25 25 C 1.52996 * 60.00086 * 252.51122 * 24 15 14 26 26 C 1.34769 * 111.64708 * 359.91120 * 13 11 10 27 27 O 1.21232 * 127.16271 * 180.02562 * 26 13 11 28 28 H 1.08994 * 109.47416 * 272.94815 * 1 2 3 29 29 H 1.08998 * 109.46726 * 32.95432 * 1 2 3 30 30 H 1.08999 * 109.46900 * 152.94943 * 1 2 3 31 31 H 1.07999 * 119.99913 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.99806 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.00014 * 179.97438 * 5 4 3 34 34 H 1.08003 * 120.00251 * 180.37153 * 6 5 4 35 35 H 1.08996 * 109.47072 * 67.58304 * 9 8 7 36 36 H 1.09000 * 109.47021 * 187.58052 * 9 8 7 37 37 H 1.09002 * 109.47066 * 307.58176 * 9 8 7 38 38 H 0.97008 * 126.68829 * 298.47870 * 10 8 7 39 39 H 1.08996 * 109.47166 * 27.06772 * 14 13 11 40 40 H 1.09005 * 109.46637 * 147.07087 * 14 13 11 41 41 H 0.96998 * 120.00779 * 185.04948 * 19 18 16 42 42 H 1.08999 * 117.49756 * 359.97438 * 24 15 14 43 43 H 1.08998 * 117.50086 * 145.02176 * 24 15 14 44 44 H 1.09005 * 117.50098 * 252.51360 * 25 24 15 45 45 H 1.08999 * 117.50572 * 107.48648 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 -0.0008 6 6 3.5807 -1.1969 0.0003 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0005 9 6 0.4674 -2.5575 1.1765 10 7 0.7318 -2.6890 -1.2750 11 6 1.2408 -3.8045 -1.8367 12 8 0.8732 -4.2495 -2.9063 13 7 2.1931 -4.3678 -1.0845 14 6 2.9147 -5.5894 -1.4493 15 6 2.2060 -6.8012 -0.8410 16 6 2.5131 -7.0738 0.6090 17 1 1.7397 -7.4469 1.2639 18 6 3.7815 -6.8469 1.0994 19 7 4.8095 -6.8254 0.2795 20 14 4.0399 -6.5700 2.9286 21 1 2.7328 -6.6423 3.6297 22 1 4.9480 -7.6159 3.4642 23 1 4.6444 -5.2311 3.1461 24 6 1.9620 -8.0071 -1.7507 25 6 0.7918 -7.1137 -1.3345 26 6 2.4060 -3.6730 0.0504 27 8 3.2014 -3.9304 0.9284 28 1 -0.3634 0.0529 1.0262 29 1 -0.3633 0.8623 -0.5590 30 1 -0.3633 -0.9152 -0.4674 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 -0.0008 34 1 4.1207 -2.1323 0.0053 35 1 -0.3244 -1.8238 1.0257 36 1 0.0315 -3.5546 1.2399 37 1 0.9989 -2.3337 2.1014 38 1 0.0343 -2.1209 -1.6379 39 1 2.9367 -5.6882 -2.5345 40 1 3.9347 -5.5362 -1.0685 41 1 5.7092 -6.7390 0.6316 42 1 2.3061 -7.9368 -2.7826 43 1 2.0238 -8.9978 -1.3005 44 1 0.0837 -7.5167 -0.6103 45 1 0.3664 -6.4558 -2.0923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:14 Heat of formation + Delta-G solvation = 9.280583 kcal Electronic energy + Delta-G solvation = -29853.124124 eV Core-core repulsion = 26030.266267 eV Total energy + Delta-G solvation = -3822.857857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.63791 -40.53742 -39.45605 -38.57644 -37.32606 -35.69788 -34.23352 -33.66153 -32.53169 -30.38300 -28.91675 -28.09838 -27.45875 -25.41092 -23.94276 -23.20646 -22.95791 -22.18978 -21.47965 -20.68714 -18.98321 -18.50230 -17.93646 -17.50120 -16.87392 -16.69737 -16.62143 -16.33107 -16.06888 -15.85352 -15.47067 -15.26670 -14.90407 -14.83651 -14.49409 -14.18797 -14.02731 -13.78893 -13.69999 -13.31035 -13.18876 -12.92132 -12.89237 -12.65136 -12.53197 -12.34216 -12.23301 -12.10249 -12.00853 -11.91691 -11.71560 -11.23001 -10.82069 -10.70942 -10.59815 -10.30607 -10.04857 -9.86066 -9.59268 -8.19237 -6.15433 0.23219 0.40822 0.71422 1.32792 1.37952 1.45985 1.48210 2.08469 2.18000 2.40591 2.76531 2.93220 3.01487 3.36237 3.61422 3.77978 3.95641 3.97809 4.09749 4.17434 4.23916 4.39089 4.46730 4.53183 4.55752 4.56824 4.58067 4.73043 4.80249 4.84472 4.87574 4.89199 4.90450 4.99456 5.07933 5.12628 5.22601 5.31209 5.39821 5.48263 5.52300 5.56242 5.59119 5.80709 5.84821 6.03800 6.21723 6.38215 6.59902 6.76554 7.17655 7.44548 8.86086 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.005552 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.817190 B = 5041.977489 C = 6073.975848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 C -0.118 4.118 4 C -0.104 4.104 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.104 4.104 8 C 0.175 3.825 9 C -0.153 4.153 10 N -0.700 5.700 11 C 0.699 3.301 12 O -0.578 6.578 13 N -0.563 5.563 14 C 0.152 3.848 15 C 0.014 3.986 16 C -0.513 4.513 17 H 0.045 0.955 18 C 0.071 3.929 19 N -0.886 5.886 20 Si 0.928 3.072 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.281 1.281 24 C -0.187 4.187 25 C -0.189 4.189 26 C 0.522 3.478 27 O -0.472 6.472 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.448 0.552 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.263 0.737 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 20.185 0.154 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.122 4.122 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.105 4.105 8 C 0.085 3.915 9 C -0.211 4.211 10 N -0.367 5.367 11 C 0.400 3.600 12 O -0.455 6.455 13 N -0.307 5.307 14 C 0.032 3.968 15 C 0.013 3.987 16 C -0.550 4.550 17 H 0.063 0.937 18 C -0.132 4.132 19 N -0.523 5.523 20 Si 0.755 3.245 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.206 1.206 24 C -0.226 4.226 25 C -0.226 4.226 26 C 0.309 3.691 27 O -0.341 6.341 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.297 0.703 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.192 19.786 0.047 21.053 hybrid contribution 0.537 -0.687 0.634 1.078 sum -6.655 19.099 0.681 20.237 Atomic orbital electron populations 1.21246 0.88855 1.03784 1.04347 1.19930 0.97627 0.91128 0.97447 1.21415 0.94175 0.98095 0.99834 1.21559 0.94998 0.98144 0.97503 1.21290 1.00738 0.92192 1.00994 1.21251 0.94352 0.98964 1.00075 1.19259 0.93079 0.92613 1.05532 1.20146 0.92173 0.91598 0.87606 1.22377 0.99058 1.04756 0.94890 1.45747 1.42135 1.27396 1.21455 1.16186 0.79282 0.81257 0.83273 1.90902 1.64928 1.67760 1.21941 1.46465 1.36426 1.26477 1.21296 1.21341 0.97623 0.80408 0.97468 1.19260 0.93342 0.92269 0.93853 1.20450 0.95843 1.45928 0.92744 0.93688 1.25137 0.95331 0.92672 1.00109 1.69874 0.98722 1.47905 1.35804 0.85983 0.77949 0.77706 0.82822 1.19908 1.20978 1.20639 1.22941 1.03936 0.96554 0.99130 1.22824 0.91983 1.04651 1.03186 1.21060 0.83224 0.83876 0.80966 1.90749 1.35625 1.70932 1.36822 0.88535 0.88533 0.91580 0.82124 0.82863 0.85161 0.88974 0.85493 0.92262 0.90134 0.70318 0.92142 0.87114 0.92693 0.90531 0.90527 0.90684 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.06 71.24 0.57 -0.80 16 2 C -0.06 -1.12 5.77 -19.87 -0.11 -1.23 16 3 C -0.12 -1.80 9.71 22.27 0.22 -1.58 16 4 C -0.10 -1.81 10.05 22.27 0.22 -1.59 16 5 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 6 C -0.13 -3.93 9.07 22.27 0.20 -3.73 16 7 C -0.10 -2.77 5.06 -19.87 -0.10 -2.87 16 8 C 0.18 5.22 0.83 2.24 0.00 5.22 16 9 C -0.15 -3.72 8.41 71.98 0.61 -3.12 16 10 N -0.70 -19.80 5.46 -442.77 -2.42 -22.22 16 11 C 0.70 27.20 8.33 179.33 1.49 28.69 16 12 O -0.58 -25.18 16.20 -3.83 -0.06 -25.25 16 13 N -0.56 -24.56 2.56 -772.82 -1.98 -26.53 16 14 C 0.15 7.54 5.38 86.38 0.46 8.00 16 15 C 0.01 0.72 1.93 -52.92 -0.10 0.61 16 16 C -0.51 -28.73 8.97 25.60 0.23 -28.50 16 17 H 0.04 2.58 7.91 -2.91 -0.02 2.56 16 18 C 0.07 3.93 3.92 84.65 0.33 4.27 16 19 N -0.89 -50.35 11.20 21.45 0.24 -50.11 16 20 Si 0.93 46.18 28.62 68.60 1.96 48.14 16 21 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 24 C -0.19 -8.88 9.88 30.60 0.30 -8.57 16 25 C -0.19 -8.75 9.79 30.59 0.30 -8.45 16 26 C 0.52 21.73 5.63 87.94 0.50 22.23 16 27 O -0.47 -22.80 14.39 -2.88 -0.04 -22.84 16 28 H 0.10 0.79 7.45 -2.39 -0.02 0.77 16 29 H 0.10 0.62 8.10 -2.39 -0.02 0.60 16 30 H 0.07 0.77 3.80 -2.39 -0.01 0.76 16 31 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.09 3.50 5.80 -2.91 -0.02 3.49 16 35 H 0.13 1.95 4.48 -2.39 -0.01 1.94 16 36 H 0.06 1.63 8.12 -2.39 -0.02 1.62 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.45 9.23 7.07 -92.70 -0.66 8.57 16 39 H 0.06 2.93 7.59 -2.39 -0.02 2.91 16 40 H 0.11 6.08 5.38 -2.38 -0.01 6.06 16 41 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 42 H 0.08 3.42 8.08 -2.39 -0.02 3.40 16 43 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.07 3.39 8.14 -2.38 -0.02 3.37 16 45 H 0.08 3.68 6.66 -2.39 -0.02 3.66 16 Total: -1.00 -71.19 357.94 3.44 -67.75 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.38 Total: 25.49 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.35 Total: 5.58 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -4.15 Total: -98.87 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.10 Total: -48.09 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.96 Total: 48.14 kcal Total: -71.19 3.44 -67.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.034 kcal (2) G-P(sol) polarization free energy of solvation -71.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds