Wall clock time and date at job start Tue Mar 31 2020 15:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30173 * 126.80646 * 2 1 4 4 O 1.20915 * 111.60718 * 180.02562 * 3 2 1 5 5 C 1.34046 * 111.56779 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.77792 * 179.97438 * 5 4 3 7 7 C 1.35452 * 106.44249 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00512 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47025 * 90.00642 * 8 7 5 10 10 H 1.09000 * 109.46941 * 305.00334 * 9 8 7 11 11 C 1.52997 * 109.47549 * 185.00061 * 9 8 7 12 12 N 1.46497 * 109.46937 * 64.99913 * 9 8 7 13 13 C 1.34777 * 119.99837 * 204.99995 * 12 9 8 14 14 O 1.21605 * 120.00340 * 0.02562 * 13 12 9 15 15 C 1.47441 * 119.99958 * 180.02562 * 13 12 9 16 16 C 1.39219 * 120.28113 * 5.80923 * 15 13 12 17 17 C 1.38216 * 120.09446 * 179.97438 * 16 15 13 18 18 C 1.38830 * 120.67228 * 0.02562 * 17 16 15 19 19 C 1.37601 * 120.57236 * 359.97438 * 18 17 16 20 20 C 1.40701 * 119.87931 * 359.74112 * 19 18 17 21 21 C 1.40885 * 120.32788 * 180.25606 * 20 19 18 22 22 H 1.07999 * 120.00232 * 214.67035 * 21 20 19 23 23 C 1.40270 * 120.00360 * 34.67282 * 21 20 19 24 24 N 1.30629 * 119.99847 * 13.83450 * 23 21 20 25 25 Si 1.86797 * 120.00356 * 193.83834 * 23 21 20 26 26 H 1.48500 * 109.46988 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47321 * 119.99607 * 25 23 21 28 28 H 1.48501 * 109.47325 * 239.99684 * 25 23 21 29 29 H 1.08997 * 109.47146 * 269.94487 * 1 2 3 30 30 H 1.08999 * 109.46952 * 29.93981 * 1 2 3 31 31 H 1.08993 * 109.47774 * 149.94261 * 1 2 3 32 32 H 1.08997 * 109.47054 * 0.02728 * 6 5 4 33 33 H 1.09001 * 109.47344 * 120.02377 * 6 5 4 34 34 H 1.09003 * 109.47102 * 240.02351 * 6 5 4 35 35 H 1.08996 * 109.47766 * 210.00831 * 8 7 5 36 36 H 1.09000 * 109.47376 * 330.01039 * 8 7 5 37 37 H 1.09000 * 109.47222 * 300.00101 * 11 9 8 38 38 H 1.09007 * 109.46763 * 60.00141 * 11 9 8 39 39 H 1.08996 * 109.47503 * 179.97438 * 11 9 8 40 40 H 0.96999 * 120.00278 * 25.00292 * 12 9 8 41 41 H 1.07999 * 119.95412 * 0.02562 * 16 15 13 42 42 H 1.08000 * 119.66550 * 180.02562 * 17 16 15 43 43 H 1.08011 * 119.71444 * 179.97438 * 18 17 16 44 44 H 1.07999 * 120.05458 * 179.97438 * 19 18 17 45 45 H 0.97000 * 120.00440 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6024 -0.6070 -0.0015 6 6 4.9021 -1.3697 -0.0029 7 6 2.3538 -1.1321 -0.0010 8 6 1.9589 -2.5864 -0.0022 9 6 1.8263 -3.0801 1.4400 10 1 2.7530 -2.8817 1.9785 11 6 1.5480 -4.5845 1.4406 12 7 0.7203 -2.3786 2.0964 13 6 0.7085 -2.2450 3.4375 14 8 1.6160 -2.7064 4.1026 15 6 -0.4049 -1.5396 4.0983 16 6 -1.5049 -1.1151 3.3581 17 6 -2.5467 -0.4546 3.9816 18 6 -2.5114 -0.2057 5.3469 19 6 -1.4377 -0.6130 6.1050 20 6 -0.3669 -1.2926 5.4957 21 6 0.7346 -1.7187 6.2638 22 1 1.7262 -1.7119 5.8360 23 6 0.5435 -2.1517 7.5842 24 7 -0.6600 -2.4186 8.0163 25 14 2.0099 -2.3465 8.7248 26 1 3.2534 -1.9839 7.9986 27 1 1.8447 -1.4543 9.9004 28 1 2.0975 -3.7566 9.1821 29 1 -0.3633 -0.0010 1.0276 30 1 -0.3633 0.8905 -0.5129 31 1 -0.3634 -0.8894 -0.5147 32 1 5.7356 -0.6674 -0.0025 33 1 4.9558 -1.9977 0.8865 34 1 4.9549 -1.9959 -0.8935 35 1 1.0044 -2.7034 -0.5154 36 1 2.7221 -3.1698 -0.5171 37 1 0.6213 -4.7828 0.9021 38 1 2.3709 -5.1064 0.9521 39 1 1.4540 -4.9362 2.4679 40 1 -0.0034 -2.0103 1.5660 41 1 -1.5447 -1.3030 2.2953 42 1 -3.3969 -0.1287 3.4007 43 1 -3.3338 0.3122 5.8182 44 1 -1.4187 -0.4146 7.1665 45 1 -0.7923 -2.7177 8.9295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601208139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:51 Heat of formation + Delta-G solvation = 26.864071 kcal Electronic energy + Delta-G solvation = -28536.638984 eV Core-core repulsion = 24714.543604 eV Total energy + Delta-G solvation = -3822.095379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.81722 -39.16580 -37.23936 -36.06364 -34.19843 -33.76879 -33.39537 -31.26099 -29.86563 -29.13584 -28.62814 -28.40603 -26.57838 -25.41812 -22.88888 -21.91360 -21.07982 -20.48162 -19.95846 -19.43515 -17.64860 -17.43903 -16.92247 -16.23274 -15.68143 -15.20873 -14.65418 -14.28698 -14.22793 -14.01124 -13.62313 -13.47028 -13.43263 -13.21643 -13.00675 -12.93090 -12.69637 -12.59683 -12.42351 -12.36790 -12.05344 -11.82982 -11.63631 -11.52871 -11.15874 -11.06376 -10.89259 -10.79407 -10.66805 -10.52426 -10.06903 -9.70129 -9.65675 -9.24013 -9.04534 -8.45860 -8.29690 -7.59330 -7.35697 -6.82015 -4.36987 1.53782 2.30070 2.36797 2.79259 3.10515 3.18164 3.19997 3.20975 3.92787 3.98072 4.17710 4.25912 4.48826 4.67048 4.74604 4.90294 5.01401 5.18721 5.27658 5.34444 5.45807 5.51638 5.56917 5.62275 5.65576 5.71328 5.74259 5.79838 5.87914 5.91478 5.98821 6.06314 6.21289 6.26347 6.34759 6.45874 6.63465 6.92970 7.09819 7.17577 7.25043 7.45178 7.61539 7.86822 7.98038 8.17511 8.39246 8.39996 8.66788 8.82528 8.90608 9.44061 10.15017 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.004262 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.903968 B = 6568.470097 C = 7407.218208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.033 3.967 3 N -0.368 5.368 4 O 0.094 5.906 5 C -0.035 4.035 6 C -0.073 4.073 7 C -0.192 4.192 8 C -0.048 4.048 9 C 0.151 3.849 10 H 0.084 0.916 11 C -0.162 4.162 12 N -0.742 5.742 13 C 0.566 3.434 14 O -0.537 6.537 15 C -0.261 4.261 16 C -0.058 4.058 17 C -0.246 4.246 18 C -0.094 4.094 19 C -0.149 4.149 20 C 0.148 3.852 21 C -0.417 4.417 22 H 0.106 0.894 23 C 0.072 3.928 24 N -0.789 5.789 25 Si 0.912 3.088 26 H -0.257 1.257 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.388 0.612 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 -1.176 -14.859 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 N -0.074 5.074 4 O 0.030 5.970 5 C -0.098 4.098 6 C -0.130 4.130 7 C -0.196 4.196 8 C -0.086 4.086 9 C 0.045 3.955 10 H 0.102 0.898 11 C -0.221 4.221 12 N -0.398 5.398 13 C 0.360 3.640 14 O -0.416 6.416 15 C -0.266 4.266 16 C -0.077 4.077 17 C -0.265 4.265 18 C -0.113 4.113 19 C -0.168 4.168 20 C 0.144 3.856 21 C -0.445 4.445 22 H 0.123 0.877 23 C -0.147 4.147 24 N -0.414 5.414 25 Si 0.737 3.263 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.199 1.199 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.223 0.777 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.301 -0.284 -14.159 15.121 hybrid contribution -0.133 -0.757 0.345 0.843 sum 5.168 -1.041 -13.814 14.785 Atomic orbital electron populations 1.20305 0.86348 1.03402 1.04149 1.23340 0.98737 0.88428 1.02129 1.73806 0.89241 1.23978 1.20417 1.84782 1.21739 1.22474 1.68021 1.24190 0.98139 0.83941 1.03543 1.20321 0.90107 0.98600 1.03992 1.20824 0.91647 0.97379 1.09755 1.20247 1.02501 0.88665 0.97213 1.20709 0.92310 0.91360 0.91111 0.89799 1.22193 1.01163 0.95593 1.03115 1.46127 1.25331 1.60634 1.07662 1.18394 0.86373 0.78776 0.80445 1.90664 1.38054 1.49567 1.63275 1.19464 0.97234 1.14152 0.95776 1.20626 0.93847 0.96831 0.96368 1.20257 1.00064 1.11287 0.94925 1.20777 0.97229 0.99352 0.93941 1.21269 0.95381 1.01012 0.99185 1.17456 0.91675 0.86958 0.89522 1.20172 0.96667 1.32998 0.94671 0.87661 1.26101 0.96955 0.93142 0.98498 1.69736 1.22962 1.31059 1.17678 0.86179 0.82239 0.78546 0.79377 1.18073 1.19838 1.19906 0.89257 0.90482 0.90276 0.90066 0.89059 0.89403 0.90279 0.89420 0.92751 0.92311 0.91447 0.77679 0.89496 0.89113 0.89116 0.87025 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 9.20 36.00 0.33 -0.69 16 2 C 0.03 0.47 7.33 -82.10 -0.60 -0.13 16 3 N -0.37 -5.97 12.07 33.42 0.40 -5.57 16 4 O 0.09 1.40 11.20 17.16 0.19 1.60 16 5 C -0.03 -0.43 7.49 -35.30 -0.26 -0.70 16 6 C -0.07 -0.59 10.23 36.00 0.37 -0.22 16 7 C -0.19 -2.47 5.30 -104.42 -0.55 -3.03 16 8 C -0.05 -0.51 5.08 -27.88 -0.14 -0.65 16 9 C 0.15 2.12 2.56 -67.93 -0.17 1.94 16 10 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 11 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 12 N -0.74 -12.72 4.74 -54.88 -0.26 -12.98 16 13 C 0.57 12.89 7.68 -12.51 -0.10 12.80 16 14 O -0.54 -13.91 13.25 5.27 0.07 -13.84 16 15 C -0.26 -6.35 5.92 -104.36 -0.62 -6.97 16 16 C -0.06 -1.22 9.37 -39.23 -0.37 -1.59 16 17 C -0.25 -5.19 10.03 -39.37 -0.39 -5.58 16 18 C -0.09 -2.12 10.01 -39.60 -0.40 -2.52 16 19 C -0.15 -3.80 8.63 -38.88 -0.34 -4.14 16 20 C 0.15 3.98 5.47 -106.54 -0.58 3.40 16 21 C -0.42 -11.51 7.65 -37.82 -0.29 -11.80 16 22 H 0.11 3.03 5.95 -52.49 -0.31 2.72 16 23 C 0.07 1.85 5.16 -17.30 -0.09 1.76 16 24 N -0.79 -20.60 11.44 55.56 0.64 -19.96 16 25 Si 0.91 19.70 29.58 -169.99 -5.03 14.67 16 26 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 29 H 0.09 1.21 6.51 -51.93 -0.34 0.87 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 36 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.39 5.88 4.68 -40.82 -0.19 5.68 16 41 H 0.09 1.49 5.62 -52.49 -0.29 1.20 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 44 H 0.11 2.90 6.80 -52.49 -0.36 2.54 16 45 H 0.28 6.65 8.29 -40.82 -0.34 6.32 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -32.06 372.16 -8.27 -40.33 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.04 Total: 9.97 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -3.85 Total: -19.83 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.78 Total: -38.51 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.26 Total: -12.24 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.06 -8.27 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601208139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.194 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds