Wall clock time and date at job start Tue Mar 31 2020 15:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30173 * 126.80646 * 2 1 4 4 O 1.20915 * 111.60718 * 180.02562 * 3 2 1 5 5 C 1.34046 * 111.56779 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.77792 * 179.97438 * 5 4 3 7 7 C 1.35452 * 106.44249 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00512 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47025 * 90.00642 * 8 7 5 10 10 H 1.09000 * 109.46941 * 305.00334 * 9 8 7 11 11 C 1.52997 * 109.47549 * 185.00061 * 9 8 7 12 12 N 1.46497 * 109.46937 * 64.99913 * 9 8 7 13 13 C 1.34777 * 119.99837 * 204.99995 * 12 9 8 14 14 O 1.21605 * 120.00340 * 0.02562 * 13 12 9 15 15 C 1.47441 * 119.99958 * 180.02562 * 13 12 9 16 16 C 1.39219 * 120.28113 * 5.80923 * 15 13 12 17 17 C 1.38216 * 120.09446 * 179.97438 * 16 15 13 18 18 C 1.38830 * 120.67228 * 0.02562 * 17 16 15 19 19 C 1.37601 * 120.57236 * 359.97438 * 18 17 16 20 20 C 1.40701 * 119.87931 * 359.74112 * 19 18 17 21 21 C 1.40885 * 120.32788 * 180.25606 * 20 19 18 22 22 H 1.07999 * 120.00232 * 214.67035 * 21 20 19 23 23 C 1.40270 * 120.00360 * 34.67282 * 21 20 19 24 24 N 1.30629 * 119.99847 * 13.83450 * 23 21 20 25 25 Si 1.86797 * 120.00356 * 193.83834 * 23 21 20 26 26 H 1.48500 * 109.46988 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47321 * 119.99607 * 25 23 21 28 28 H 1.48501 * 109.47325 * 239.99684 * 25 23 21 29 29 H 1.08997 * 109.47146 * 269.94487 * 1 2 3 30 30 H 1.08999 * 109.46952 * 29.93981 * 1 2 3 31 31 H 1.08993 * 109.47774 * 149.94261 * 1 2 3 32 32 H 1.08997 * 109.47054 * 0.02728 * 6 5 4 33 33 H 1.09001 * 109.47344 * 120.02377 * 6 5 4 34 34 H 1.09003 * 109.47102 * 240.02351 * 6 5 4 35 35 H 1.08996 * 109.47766 * 210.00831 * 8 7 5 36 36 H 1.09000 * 109.47376 * 330.01039 * 8 7 5 37 37 H 1.09000 * 109.47222 * 300.00101 * 11 9 8 38 38 H 1.09007 * 109.46763 * 60.00141 * 11 9 8 39 39 H 1.08996 * 109.47503 * 179.97438 * 11 9 8 40 40 H 0.96999 * 120.00278 * 25.00292 * 12 9 8 41 41 H 1.07999 * 119.95412 * 0.02562 * 16 15 13 42 42 H 1.08000 * 119.66550 * 180.02562 * 17 16 15 43 43 H 1.08011 * 119.71444 * 179.97438 * 18 17 16 44 44 H 1.07999 * 120.05458 * 179.97438 * 19 18 17 45 45 H 0.97000 * 120.00440 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6024 -0.6070 -0.0015 6 6 4.9021 -1.3697 -0.0029 7 6 2.3538 -1.1321 -0.0010 8 6 1.9589 -2.5864 -0.0022 9 6 1.8263 -3.0801 1.4400 10 1 2.7530 -2.8817 1.9785 11 6 1.5480 -4.5845 1.4406 12 7 0.7203 -2.3786 2.0964 13 6 0.7085 -2.2450 3.4375 14 8 1.6160 -2.7064 4.1026 15 6 -0.4049 -1.5396 4.0983 16 6 -1.5049 -1.1151 3.3581 17 6 -2.5467 -0.4546 3.9816 18 6 -2.5114 -0.2057 5.3469 19 6 -1.4377 -0.6130 6.1050 20 6 -0.3669 -1.2926 5.4957 21 6 0.7346 -1.7187 6.2638 22 1 1.7262 -1.7119 5.8360 23 6 0.5435 -2.1517 7.5842 24 7 -0.6600 -2.4186 8.0163 25 14 2.0099 -2.3465 8.7248 26 1 3.2534 -1.9839 7.9986 27 1 1.8447 -1.4543 9.9004 28 1 2.0975 -3.7566 9.1821 29 1 -0.3633 -0.0010 1.0276 30 1 -0.3633 0.8905 -0.5129 31 1 -0.3634 -0.8894 -0.5147 32 1 5.7356 -0.6674 -0.0025 33 1 4.9558 -1.9977 0.8865 34 1 4.9549 -1.9959 -0.8935 35 1 1.0044 -2.7034 -0.5154 36 1 2.7221 -3.1698 -0.5171 37 1 0.6213 -4.7828 0.9021 38 1 2.3709 -5.1064 0.9521 39 1 1.4540 -4.9362 2.4679 40 1 -0.0034 -2.0103 1.5660 41 1 -1.5447 -1.3030 2.2953 42 1 -3.3969 -0.1287 3.4007 43 1 -3.3338 0.3122 5.8182 44 1 -1.4187 -0.4146 7.1665 45 1 -0.7923 -2.7177 8.9295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601208139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:50 Heat of formation + Delta-G solvation = 8.039127 kcal Electronic energy + Delta-G solvation = -28537.455295 eV Core-core repulsion = 24714.543604 eV Total energy + Delta-G solvation = -3822.911690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.85926 -40.81275 -38.84897 -37.48405 -35.66409 -35.28520 -34.47348 -32.72039 -31.71282 -30.73758 -29.63019 -29.31439 -27.48909 -27.28751 -24.46915 -23.25259 -22.69804 -21.70864 -21.15624 -20.94661 -19.36556 -18.64016 -18.19126 -17.67816 -17.19507 -16.93215 -16.01650 -15.80516 -15.61366 -15.35631 -15.07080 -14.80608 -14.53847 -14.37948 -14.25431 -14.14790 -13.99220 -13.78546 -13.53234 -13.39260 -13.29279 -13.05041 -12.90024 -12.88906 -12.84320 -12.58473 -12.47139 -12.31588 -12.05123 -11.89031 -11.75442 -11.47389 -11.12017 -10.75979 -10.23975 -10.05875 -9.82226 -9.39234 -9.22780 -8.70625 -6.35218 0.53427 0.55467 0.99302 1.27611 1.31111 1.45795 1.46480 2.19579 2.28469 2.39260 2.53356 2.77936 3.29729 3.58954 3.72199 3.83296 3.95859 4.06023 4.29372 4.34178 4.37998 4.45096 4.49432 4.58114 4.62974 4.68003 4.71239 4.77036 4.85736 4.89990 4.91330 4.92553 4.94890 5.06339 5.15608 5.19120 5.23952 5.33749 5.37737 5.40730 5.61199 5.79601 5.83449 6.04351 6.10086 6.34119 6.64650 6.81372 6.92591 7.03057 7.37029 7.73535 8.28926 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.004262 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.903968 B = 6568.470097 C = 7407.218208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.020 3.980 3 N -0.407 5.407 4 O 0.074 5.926 5 C -0.035 4.035 6 C -0.073 4.073 7 C -0.207 4.207 8 C -0.036 4.036 9 C 0.146 3.854 10 H 0.057 0.943 11 C -0.156 4.156 12 N -0.722 5.722 13 C 0.561 3.439 14 O -0.578 6.578 15 C -0.281 4.281 16 C -0.054 4.054 17 C -0.236 4.236 18 C -0.092 4.092 19 C -0.180 4.180 20 C 0.116 3.884 21 C -0.458 4.458 22 H 0.079 0.921 23 C 0.034 3.966 24 N -0.821 5.821 25 Si 0.975 3.025 26 H -0.270 1.270 27 H -0.255 1.255 28 H -0.265 1.265 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.025 0.975 40 H 0.400 0.600 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 -2.080 -17.804 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 N -0.117 5.117 4 O 0.013 5.987 5 C -0.098 4.098 6 C -0.130 4.130 7 C -0.211 4.211 8 C -0.073 4.073 9 C 0.042 3.958 10 H 0.075 0.925 11 C -0.214 4.214 12 N -0.376 5.376 13 C 0.353 3.647 14 O -0.460 6.460 15 C -0.286 4.286 16 C -0.072 4.072 17 C -0.255 4.255 18 C -0.110 4.110 19 C -0.199 4.199 20 C 0.112 3.888 21 C -0.487 4.487 22 H 0.097 0.903 23 C -0.181 4.181 24 N -0.448 5.448 25 Si 0.796 3.204 26 H -0.194 1.194 27 H -0.179 1.179 28 H -0.190 1.190 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.044 0.956 40 H 0.238 0.762 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.548 -1.185 -17.153 17.785 hybrid contribution 0.026 -0.427 1.038 1.123 sum 4.575 -1.612 -16.115 16.829 Atomic orbital electron populations 1.20425 0.84926 1.05410 1.03586 1.23897 0.99943 0.88731 1.01267 1.73793 0.89952 1.25482 1.22495 1.84731 1.21477 1.23948 1.68546 1.25031 0.99944 0.83207 1.01658 1.20555 0.88345 0.98723 1.05406 1.21154 0.91475 0.98188 1.10277 1.20281 1.05048 0.87366 0.94631 1.20942 0.89899 0.92201 0.92792 0.92507 1.22129 1.03624 0.94424 1.01206 1.45927 1.26333 1.59614 1.05774 1.18378 0.85581 0.78491 0.82214 1.90641 1.39367 1.51188 1.64793 1.19919 0.98949 1.14177 0.95545 1.21048 0.92381 0.95420 0.98396 1.20792 1.00942 1.09287 0.94487 1.21164 0.96791 0.98243 0.94845 1.21208 0.96847 1.03014 0.98850 1.17849 0.92249 0.87504 0.91152 1.20078 0.95983 1.36316 0.96359 0.90306 1.26753 0.99562 0.92489 0.99264 1.69754 1.24281 1.32328 1.18398 0.85277 0.78359 0.79076 0.77699 1.19440 1.17926 1.18956 0.90786 0.89850 0.87077 0.89064 0.89084 0.86162 0.87882 0.85799 0.90807 0.88903 0.95558 0.76249 0.85119 0.84832 0.86320 0.88885 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 9.20 71.24 0.66 -1.20 16 2 C 0.02 0.56 7.33 43.58 0.32 0.87 16 3 N -0.41 -13.18 12.07 -49.57 -0.60 -13.78 16 4 O 0.07 2.21 11.20 71.58 0.80 3.01 16 5 C -0.04 -0.82 7.49 25.04 0.19 -0.63 16 6 C -0.07 -1.02 10.23 71.24 0.73 -0.29 16 7 C -0.21 -4.86 5.30 -19.74 -0.10 -4.97 16 8 C -0.04 -0.61 5.08 29.85 0.15 -0.46 16 9 C 0.15 3.83 2.56 44.99 0.12 3.95 16 10 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 11 C -0.16 -3.61 9.48 71.98 0.68 -2.93 16 12 N -0.72 -23.82 4.74 -445.79 -2.11 -25.93 16 13 C 0.56 26.08 7.68 86.67 0.67 26.74 16 14 O -0.58 -31.58 13.25 -4.05 -0.05 -31.64 16 15 C -0.28 -13.86 5.92 -19.70 -0.12 -13.97 16 16 C -0.05 -2.15 9.37 22.50 0.21 -1.94 16 17 C -0.24 -9.23 10.03 22.41 0.22 -9.00 16 18 C -0.09 -4.04 10.01 22.26 0.22 -3.82 16 19 C -0.18 -9.46 8.63 22.72 0.20 -9.26 16 20 C 0.12 6.53 5.47 -21.11 -0.12 6.41 16 21 C -0.46 -27.01 7.65 23.41 0.18 -26.83 16 22 H 0.08 4.93 5.95 -2.91 -0.02 4.91 16 23 C 0.03 1.87 5.16 85.37 0.44 2.31 16 24 N -0.82 -44.85 11.44 21.88 0.25 -44.60 16 25 Si 0.97 42.47 29.58 68.60 2.03 44.50 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 28 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 29 H 0.07 1.82 6.51 -2.39 -0.02 1.81 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 1.59 7.66 -2.39 -0.02 1.58 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.34 7.66 -2.39 -0.02 1.33 16 36 H 0.12 1.31 8.08 -2.39 -0.02 1.29 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.40 11.00 4.68 -92.71 -0.43 10.56 16 41 H 0.13 3.96 5.62 -2.91 -0.02 3.95 16 42 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 43 H 0.12 4.47 8.06 -2.90 -0.02 4.44 16 44 H 0.09 5.11 6.80 -2.91 -0.02 5.09 16 45 H 0.29 14.19 8.29 -92.71 -0.77 13.42 16 Total: -1.00 -77.37 372.16 5.55 -71.82 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.59 Total: 31.64 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.64 Total: -35.02 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -2.46 Total: -84.31 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: 0.75 Total: -28.63 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -77.37 5.55 -71.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601208139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.860 kcal (2) G-P(sol) polarization free energy of solvation -77.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds