Wall clock time and date at job start Tue Mar 31 2020 15:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30176 * 126.80138 * 2 1 4 4 O 1.20926 * 111.60415 * 179.97438 * 3 2 1 5 5 C 1.34036 * 111.56571 * 359.76273 * 4 3 2 6 6 C 1.50702 * 126.77693 * 180.28967 * 5 4 3 7 7 C 1.35453 * 106.44811 * 0.37626 * 5 4 3 8 8 C 1.50696 * 128.00715 * 179.91345 * 7 5 4 9 9 H 1.09002 * 109.47402 * 5.08467 * 8 7 5 10 10 C 1.52996 * 109.47472 * 245.08463 * 8 7 5 11 11 C 1.52999 * 109.47238 * 125.08078 * 8 7 5 12 12 N 1.46500 * 109.47320 * 185.00019 * 11 8 7 13 13 C 1.34781 * 119.99973 * 180.02562 * 12 11 8 14 14 O 1.21614 * 120.00016 * 359.97438 * 13 12 11 15 15 C 1.47432 * 119.99878 * 180.02562 * 13 12 11 16 16 C 1.39221 * 120.28456 * 355.53488 * 15 13 12 17 17 C 1.38217 * 120.09412 * 180.27927 * 16 15 13 18 18 C 1.38827 * 120.67408 * 359.69390 * 17 16 15 19 19 C 1.37595 * 120.57134 * 0.02562 * 18 17 16 20 20 C 1.40713 * 119.88213 * 0.02562 * 19 18 17 21 21 C 1.40890 * 120.32816 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99422 * 217.42633 * 21 20 19 23 23 C 1.40268 * 120.00142 * 37.42461 * 21 20 19 24 24 N 1.30635 * 119.99924 * 189.74374 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 9.73731 * 23 21 20 26 26 H 1.48510 * 109.47195 * 266.66828 * 25 23 21 27 27 H 1.48499 * 109.47145 * 26.66264 * 25 23 21 28 28 H 1.48496 * 109.47096 * 146.66711 * 25 23 21 29 29 H 1.09003 * 109.46833 * 274.90438 * 1 2 3 30 30 H 1.08995 * 109.47275 * 34.90672 * 1 2 3 31 31 H 1.08999 * 109.46893 * 154.90959 * 1 2 3 32 32 H 1.09000 * 109.47109 * 274.89779 * 6 5 4 33 33 H 1.09006 * 109.47297 * 34.89557 * 6 5 4 34 34 H 1.09005 * 109.47397 * 154.88993 * 6 5 4 35 35 H 1.09001 * 109.47243 * 184.77497 * 10 8 7 36 36 H 1.09007 * 109.46913 * 304.77345 * 10 8 7 37 37 H 1.08996 * 109.47396 * 64.76632 * 10 8 7 38 38 H 1.08998 * 109.46811 * 64.99782 * 11 8 7 39 39 H 1.09001 * 109.46943 * 305.00326 * 11 8 7 40 40 H 0.96994 * 120.00153 * 0.02562 * 12 11 8 41 41 H 1.07997 * 119.95407 * 359.97438 * 16 15 13 42 42 H 1.08000 * 119.66600 * 179.71496 * 17 16 15 43 43 H 1.08000 * 119.71505 * 180.02562 * 18 17 16 44 44 H 1.07996 * 120.06147 * 180.02562 * 19 18 17 45 45 H 0.96996 * 120.00081 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6067 0.0061 6 6 4.9021 -1.3695 0.0145 7 6 2.3539 -1.1320 0.0007 8 6 1.9591 -2.5863 0.0018 9 1 2.8512 -3.2050 0.0988 10 6 1.2458 -2.9222 -1.3095 11 6 1.0192 -2.8588 1.1779 12 7 0.7304 -4.2932 1.2501 13 6 -0.0820 -4.7693 2.2144 14 8 -0.5749 -4.0083 3.0248 15 6 -0.3722 -6.2130 2.2874 16 6 0.1138 -7.0771 1.3100 17 6 -0.1655 -8.4290 1.3791 18 6 -0.9249 -8.9429 2.4215 19 6 -1.4142 -8.1147 3.4054 20 6 -1.1451 -6.7344 3.3577 21 6 -1.6419 -5.8777 4.3599 22 1 -1.9876 -4.8878 4.1014 23 6 -1.6876 -6.3106 5.6933 24 7 -2.3182 -5.5996 6.5896 25 14 -0.8468 -7.9038 6.1875 26 1 -1.8251 -9.0195 6.1263 27 1 0.2772 -8.1796 5.2570 28 1 -0.3242 -7.7790 7.5719 29 1 -0.3633 0.0879 1.0239 30 1 -0.3633 0.8427 -0.5880 31 1 -0.3633 -0.9307 -0.4358 32 1 5.2643 -1.4815 -1.0075 33 1 5.6397 -0.8243 0.6036 34 1 4.7427 -2.3544 0.4536 35 1 0.8856 -3.9503 -1.2741 36 1 0.4020 -2.2461 -1.4475 37 1 1.9416 -2.8092 -2.1408 38 1 0.0897 -2.3077 1.0353 39 1 1.4941 -2.5366 2.1046 40 1 1.1238 -4.9003 0.6040 41 1 0.7057 -6.6899 0.4939 42 1 0.2111 -9.0924 0.6147 43 1 -1.1335 -10.0018 2.4605 44 1 -2.0037 -8.5233 4.2127 45 1 -2.3495 -5.8988 7.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601363311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:50 Heat of formation + Delta-G solvation = 32.568235 kcal Electronic energy + Delta-G solvation = -27614.568663 eV Core-core repulsion = 23792.720635 eV Total energy + Delta-G solvation = -3821.848028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.03278 -39.21564 -37.57395 -36.56479 -34.26645 -33.79095 -33.45216 -31.64745 -30.47849 -29.94245 -28.86068 -27.79382 -26.53347 -25.25465 -23.57087 -22.22150 -21.09254 -20.53100 -20.31614 -19.48626 -17.78199 -17.61122 -17.02809 -16.49843 -15.73035 -15.36385 -14.97098 -14.48042 -14.28144 -14.12073 -14.10530 -13.69294 -13.55552 -13.34426 -13.30544 -13.08230 -12.89984 -12.87389 -12.63178 -12.50098 -12.38209 -12.03885 -11.68108 -11.61131 -11.42892 -11.31987 -10.97197 -10.72763 -10.65765 -10.46200 -10.18170 -9.89734 -9.83218 -9.28024 -9.26019 -8.51189 -8.43332 -7.84532 -7.60489 -6.90649 -4.49946 1.33206 2.07882 2.09245 2.57725 2.97058 3.07234 3.16123 3.27095 3.78989 3.93788 3.99593 4.13287 4.31053 4.50657 4.58995 4.74359 4.93476 4.99202 5.08230 5.14143 5.18137 5.35760 5.38338 5.43915 5.49451 5.60102 5.66074 5.71111 5.75921 5.82212 5.88161 5.88902 5.99106 6.00161 6.13548 6.25230 6.38171 6.48314 6.77122 7.04501 7.08265 7.20778 7.36237 7.55917 7.73345 7.98934 8.18715 8.28401 8.47001 8.61785 8.84684 9.33628 10.06307 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.003062 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.295675 B = 9143.479182 C = 9841.929432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.032 3.968 3 N -0.369 5.369 4 O 0.094 5.906 5 C -0.032 4.032 6 C -0.074 4.074 7 C -0.187 4.187 8 C -0.023 4.023 9 H 0.088 0.912 10 C -0.147 4.147 11 C 0.131 3.869 12 N -0.748 5.748 13 C 0.561 3.439 14 O -0.526 6.526 15 C -0.248 4.248 16 C -0.042 4.042 17 C -0.254 4.254 18 C -0.066 4.066 19 C -0.223 4.223 20 C 0.117 3.883 21 C -0.402 4.402 22 H 0.123 0.877 23 C 0.079 3.921 24 N -0.794 5.794 25 Si 0.905 3.095 26 H -0.268 1.268 27 H -0.242 1.242 28 H -0.288 1.288 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.391 0.609 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 3.946 -13.407 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.192 4.192 8 C -0.043 4.043 9 H 0.106 0.894 10 C -0.204 4.204 11 C 0.007 3.993 12 N -0.403 5.403 13 C 0.354 3.646 14 O -0.403 6.403 15 C -0.253 4.253 16 C -0.061 4.061 17 C -0.273 4.273 18 C -0.085 4.085 19 C -0.242 4.242 20 C 0.112 3.888 21 C -0.429 4.429 22 H 0.140 0.860 23 C -0.141 4.141 24 N -0.417 5.417 25 Si 0.731 3.269 26 H -0.194 1.194 27 H -0.165 1.165 28 H -0.216 1.216 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.225 0.775 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.373 5.957 -12.527 17.321 hybrid contribution 0.448 -1.736 0.070 1.794 sum 10.821 4.221 -12.457 17.032 Atomic orbital electron populations 1.20361 0.85948 1.03817 1.03990 1.23422 0.98945 0.88284 1.02015 1.73830 0.89245 1.23926 1.20572 1.84790 1.21708 1.22420 1.68072 1.24221 0.98127 0.83907 1.03260 1.20353 0.90074 0.98777 1.03939 1.20752 0.91599 0.96926 1.09890 1.19672 0.99355 0.89047 0.96179 0.89401 1.21889 1.00567 1.02332 0.95623 1.21182 0.98333 0.83063 0.96762 1.45980 1.52632 1.07358 1.34370 1.18345 0.77755 0.88803 0.79734 1.90743 1.51102 1.59163 1.39333 1.19418 1.10817 0.91432 1.03644 1.20758 0.96098 0.93574 0.95656 1.20288 1.10130 0.94790 1.02096 1.20744 0.95810 0.97613 0.94342 1.21161 1.07250 0.94607 1.01228 1.17555 0.87948 0.91240 0.92011 1.20161 1.29376 1.03190 0.90158 0.85956 1.26363 0.92945 0.98043 0.96783 1.69568 1.30627 1.37523 1.04006 0.86405 0.81727 0.81087 0.77675 1.19416 1.16507 1.21559 0.89641 0.90610 0.89551 0.89530 0.89791 0.88903 0.91423 0.91998 0.92419 0.91515 0.92033 0.77459 0.88745 0.88538 0.88575 0.87812 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.15 36.01 0.33 -0.59 16 2 C 0.03 0.41 7.20 -82.10 -0.59 -0.18 16 3 N -0.37 -5.12 12.07 33.42 0.40 -4.71 16 4 O 0.09 1.17 11.20 17.19 0.19 1.37 16 5 C -0.03 -0.33 7.49 -35.30 -0.26 -0.59 16 6 C -0.07 -0.46 10.27 36.01 0.37 -0.09 16 7 C -0.19 -2.12 4.94 -104.42 -0.52 -2.64 16 8 C -0.02 -0.24 2.68 -91.78 -0.25 -0.49 16 9 H 0.09 0.78 6.99 -51.93 -0.36 0.42 16 10 C -0.15 -1.35 9.08 37.16 0.34 -1.01 16 11 C 0.13 1.87 4.84 -4.04 -0.02 1.85 16 12 N -0.75 -12.03 5.19 -61.38 -0.32 -12.35 16 13 C 0.56 12.30 7.72 -12.51 -0.10 12.20 16 14 O -0.53 -13.73 13.56 5.27 0.07 -13.66 16 15 C -0.25 -5.64 5.92 -104.37 -0.62 -6.26 16 16 C -0.04 -0.80 9.52 -39.22 -0.37 -1.17 16 17 C -0.25 -4.80 10.03 -39.37 -0.39 -5.20 16 18 C -0.07 -1.35 10.01 -39.60 -0.40 -1.74 16 19 C -0.22 -5.19 6.97 -38.88 -0.27 -5.46 16 20 C 0.12 2.96 5.01 -106.54 -0.53 2.43 16 21 C -0.40 -11.18 8.27 -37.82 -0.31 -11.49 16 22 H 0.12 3.77 6.03 -52.49 -0.32 3.46 16 23 C 0.08 2.10 5.48 -17.30 -0.09 2.00 16 24 N -0.79 -21.54 13.92 55.56 0.77 -20.77 16 25 Si 0.91 20.55 24.54 -169.99 -4.17 16.38 16 26 H -0.27 -5.79 6.81 56.52 0.39 -5.41 16 27 H -0.24 -5.60 6.68 56.52 0.38 -5.22 16 28 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.87 5.15 -51.93 -0.27 0.60 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.52 7.14 -51.93 -0.37 0.15 16 35 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 36 H 0.06 0.59 5.96 -51.93 -0.31 0.28 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 1.00 6.11 -51.93 -0.32 0.69 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.39 5.15 5.70 -40.82 -0.23 4.92 16 41 H 0.09 1.42 6.42 -52.49 -0.34 1.08 16 42 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.10 2.38 5.12 -52.49 -0.27 2.11 16 45 H 0.29 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -31.89 360.62 -7.01 -38.91 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.71 Total: 7.85 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -3.69 Total: -18.43 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.86 Total: -37.83 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.26 Total: -12.30 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.17 Total: 16.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.89 -7.01 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.474 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds