Wall clock time and date at job start Tue Mar 31 2020 15:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34516 * 125.78554 * 2 1 4 4 C 1.41380 * 106.83572 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84496 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.79366 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47138 * 90.00208 * 6 5 4 8 8 C 1.34777 * 119.99665 * 180.28062 * 7 6 5 9 9 O 1.21583 * 120.00270 * 359.72083 * 8 7 6 10 10 N 1.34775 * 119.99585 * 179.72218 * 8 7 6 11 11 C 1.46507 * 119.99876 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46877 * 35.00407 * 11 10 8 13 13 C 1.52999 * 109.46971 * 155.00341 * 11 10 8 14 14 C 1.50697 * 109.47122 * 295.00086 * 13 11 10 15 15 H 1.08001 * 120.00333 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00361 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00528 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99607 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47142 * 90.00084 * 18 16 14 20 20 H 1.48501 * 109.47026 * 210.00297 * 18 16 14 21 21 H 1.48502 * 109.47240 * 330.00031 * 18 16 14 22 22 C 1.50701 * 109.47186 * 275.00373 * 11 10 8 23 23 C 1.38235 * 119.99892 * 319.72316 * 22 11 10 24 24 C 1.38241 * 119.99865 * 179.78989 * 23 22 11 25 25 C 1.38238 * 119.99498 * 0.44129 * 24 23 22 26 26 C 1.38232 * 120.00209 * 359.81233 * 25 24 23 27 27 C 1.38231 * 120.00370 * 359.97438 * 26 25 24 28 28 O 1.34301 * 125.78933 * 180.35869 * 2 1 3 29 29 H 1.09000 * 109.47502 * 89.99877 * 1 2 3 30 30 H 1.09004 * 109.47167 * 209.99329 * 1 2 3 31 31 H 1.09000 * 109.47367 * 329.99271 * 1 2 3 32 32 H 1.07996 * 126.58152 * 0.06551 * 3 2 1 33 33 H 1.08003 * 126.57956 * 180.02562 * 4 3 2 34 34 H 1.09009 * 109.46601 * 330.00111 * 6 5 4 35 35 H 1.08998 * 109.47035 * 210.00618 * 6 5 4 36 36 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 37 37 H 0.97000 * 120.00523 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47101 * 55.00002 * 13 11 10 39 39 H 1.08998 * 109.47012 * 175.00235 * 13 11 10 40 40 H 0.96993 * 120.00446 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.00293 * 0.02562 * 23 22 11 42 42 H 1.07997 * 120.00102 * 180.27842 * 24 23 22 43 43 H 1.07997 * 119.99225 * 179.83635 * 25 24 23 44 44 H 1.08004 * 119.99771 * 179.97438 * 26 25 24 45 45 H 1.07990 * 120.00306 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6378 -0.0019 7 7 5.1556 -1.9388 1.3792 8 6 6.2047 -2.7484 1.6251 9 8 6.8284 -3.2330 0.7008 10 7 6.5623 -3.0207 2.8957 11 6 7.7023 -3.9012 3.1631 12 1 8.4658 -3.7489 2.4002 13 6 8.2852 -3.5769 4.5400 14 6 8.8534 -2.1812 4.5289 15 1 8.8034 -1.5849 3.6298 16 6 9.4372 -1.6654 5.6665 17 7 9.9326 -0.4472 5.6570 18 14 9.5231 -2.6965 7.2218 19 1 10.7856 -3.4782 7.2284 20 1 9.4865 -1.8053 8.4092 21 1 8.3654 -3.6255 7.2644 22 6 7.2452 -5.3370 3.1366 23 6 6.0323 -5.6867 3.7001 24 6 5.6110 -7.0030 3.6720 25 6 6.4068 -7.9710 3.0883 26 6 7.6220 -7.6221 2.5294 27 6 8.0413 -6.3051 2.5536 28 8 2.2924 -1.0894 -0.0068 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.9665 2.1204 0.0010 33 1 4.5212 1.2434 -0.0004 34 1 5.6041 -1.1583 -0.5152 35 1 4.5108 -2.5629 -0.5165 36 1 4.6582 -1.5518 2.1166 37 1 6.0645 -2.6344 3.6332 38 1 7.4991 -3.6432 5.2921 39 1 9.0756 -4.2891 4.7768 40 1 10.3430 -0.0842 6.4574 41 1 5.4122 -4.9310 4.1591 42 1 4.6614 -7.2755 4.1083 43 1 6.0788 -8.9998 3.0686 44 1 8.2439 -8.3785 2.0737 45 1 8.9905 -6.0325 2.1166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601585665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:21 Heat of formation + Delta-G solvation = 5.135647 kcal Electronic energy + Delta-G solvation = -27018.532633 eV Core-core repulsion = 23195.495039 eV Total energy + Delta-G solvation = -3823.037595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.76810 -39.82016 -38.65179 -35.64209 -34.57663 -33.35246 -32.68484 -32.11886 -31.02857 -30.51118 -29.32356 -28.20465 -25.14668 -24.17086 -22.30681 -21.93000 -21.74522 -20.78593 -20.38547 -19.81326 -18.23979 -17.16326 -16.77791 -16.35045 -16.29505 -15.67823 -15.22823 -14.79877 -14.67362 -14.38848 -14.28319 -13.80944 -13.65410 -13.46193 -13.24343 -13.14218 -13.03307 -12.96747 -12.73715 -12.56254 -12.40935 -12.34981 -11.85041 -11.76322 -11.32801 -11.06414 -10.71334 -10.62651 -10.15706 -10.07253 -9.85531 -9.76232 -9.32147 -8.97281 -8.62582 -8.58138 -8.53544 -8.36621 -8.25267 -6.10419 -4.09962 1.41168 1.71295 1.74204 2.37415 2.65606 3.24910 3.29633 3.34658 3.36785 3.68245 4.15103 4.37821 4.38553 4.69475 4.74002 4.87467 5.02459 5.13185 5.20445 5.21819 5.23691 5.30742 5.34690 5.39093 5.47394 5.55648 5.65722 5.84861 5.85296 5.86894 5.96069 6.04732 6.26775 6.33636 6.35181 6.45550 6.60683 6.76482 6.79293 6.84354 6.96034 7.00144 7.06028 7.24729 7.34020 7.47010 7.66157 8.43603 8.48530 8.96044 9.06232 9.50455 11.02371 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.003490 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.162137 B = 8021.384788 C =10113.966389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.215 4.215 4 C -0.180 4.180 5 C -0.033 4.033 6 C 0.226 3.774 7 N -0.750 5.750 8 C 0.709 3.291 9 O -0.596 6.596 10 N -0.715 5.715 11 C 0.213 3.787 12 H 0.092 0.908 13 C -0.014 4.014 14 C -0.519 4.519 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.076 4.076 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.107 4.107 28 O -0.170 6.170 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.397 0.603 37 H 0.397 0.603 38 H 0.023 0.977 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 -3.796 -8.556 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.234 4.234 4 C -0.200 4.200 5 C -0.083 4.083 6 C 0.102 3.898 7 N -0.408 5.408 8 C 0.409 3.591 9 O -0.474 6.474 10 N -0.367 5.367 11 C 0.108 3.892 12 H 0.110 0.890 13 C -0.052 4.052 14 C -0.557 4.557 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.078 4.078 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.125 4.125 28 O -0.067 6.067 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.231 0.769 37 H 0.231 0.769 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.582 -4.414 -9.300 19.517 hybrid contribution -0.268 0.253 1.637 1.678 sum -16.850 -4.161 -7.663 18.972 Atomic orbital electron populations 1.20314 0.85113 1.04113 1.03494 1.22503 0.94053 0.84258 1.05270 1.21608 0.92678 0.99474 1.09639 1.21729 0.98462 0.93838 1.06009 1.22350 0.82943 0.94523 1.08519 1.19312 0.89693 0.96816 0.84000 1.45097 1.34515 1.53449 1.07707 1.15862 0.80147 0.79071 0.84059 1.90886 1.55975 1.57087 1.43465 1.45022 1.34585 1.51813 1.05261 1.19828 0.86378 0.82349 1.00679 0.88953 1.19880 0.96372 0.98365 0.90563 1.21021 1.37792 0.97421 0.99449 0.90564 1.24988 0.94768 0.94771 0.98616 1.69902 1.39228 1.15420 1.29131 0.86861 0.79181 0.80517 0.83221 1.20202 1.21405 1.18975 1.20629 0.94425 0.96903 0.95806 1.20913 0.96351 0.95878 0.99449 1.21047 0.99558 0.93369 1.00429 1.21008 0.95303 0.98868 1.00039 1.21057 0.96595 0.96173 1.00281 1.21043 0.99892 0.92679 0.98902 1.83981 1.16322 1.35032 1.71374 0.90106 0.90507 0.89301 0.83379 0.82998 0.88516 0.90218 0.76881 0.76877 0.95883 0.95157 0.92667 0.86604 0.86761 0.86819 0.86527 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.42 36.01 0.38 -0.08 16 2 C -0.01 -0.10 7.32 -35.62 -0.26 -0.36 16 3 C -0.21 -2.20 10.81 -39.70 -0.43 -2.62 16 4 C -0.18 -2.05 10.81 -39.70 -0.43 -2.48 16 5 C -0.03 -0.41 6.69 -35.62 -0.24 -0.64 16 6 C 0.23 2.95 6.20 -5.19 -0.03 2.92 16 7 N -0.75 -10.86 5.55 -66.41 -0.37 -11.23 16 8 C 0.71 12.97 8.52 -86.92 -0.74 12.23 16 9 O -0.60 -12.92 16.01 5.29 0.08 -12.83 16 10 N -0.71 -12.93 4.05 -59.81 -0.24 -13.17 16 11 C 0.21 4.24 2.11 -69.08 -0.15 4.09 16 12 H 0.09 2.05 7.44 -51.93 -0.39 1.66 16 13 C -0.01 -0.32 3.56 -27.88 -0.10 -0.41 16 14 C -0.52 -13.90 9.39 -34.44 -0.32 -14.22 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 18 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 22 C -0.08 -1.37 4.91 -104.62 -0.51 -1.88 16 23 C -0.11 -1.75 9.32 -39.58 -0.37 -2.12 16 24 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 25 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 27 C -0.11 -1.79 9.67 -39.58 -0.38 -2.18 16 28 O -0.17 -2.10 10.65 5.71 0.06 -2.04 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.10 1.26 8.14 -51.92 -0.42 0.83 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.40 5.03 8.48 -40.82 -0.35 4.69 16 37 H 0.40 6.53 8.62 -40.82 -0.35 6.18 16 38 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 39 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.12 1.75 7.73 -52.49 -0.41 1.34 16 42 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 45 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -33.40 386.14 -9.91 -43.31 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.49 Total: 12.50 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -4.88 Total: -12.54 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.16 Total: -50.42 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.15 Total: -14.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.40 -9.91 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601585665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.449 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds