Wall clock time and date at job start Tue Mar 31 2020 15:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34516 * 125.78554 * 2 1 4 4 C 1.41380 * 106.83572 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84496 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.79366 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47138 * 90.00208 * 6 5 4 8 8 C 1.34777 * 119.99665 * 180.28062 * 7 6 5 9 9 O 1.21583 * 120.00270 * 359.72083 * 8 7 6 10 10 N 1.34775 * 119.99585 * 179.72218 * 8 7 6 11 11 C 1.46507 * 119.99876 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46877 * 35.00407 * 11 10 8 13 13 C 1.52999 * 109.46971 * 155.00341 * 11 10 8 14 14 C 1.50697 * 109.47122 * 295.00086 * 13 11 10 15 15 H 1.08001 * 120.00333 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00361 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00528 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99607 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47142 * 90.00084 * 18 16 14 20 20 H 1.48501 * 109.47026 * 210.00297 * 18 16 14 21 21 H 1.48502 * 109.47240 * 330.00031 * 18 16 14 22 22 C 1.50701 * 109.47186 * 275.00373 * 11 10 8 23 23 C 1.38235 * 119.99892 * 319.72316 * 22 11 10 24 24 C 1.38241 * 119.99865 * 179.78989 * 23 22 11 25 25 C 1.38238 * 119.99498 * 0.44129 * 24 23 22 26 26 C 1.38232 * 120.00209 * 359.81233 * 25 24 23 27 27 C 1.38231 * 120.00370 * 359.97438 * 26 25 24 28 28 O 1.34301 * 125.78933 * 180.35869 * 2 1 3 29 29 H 1.09000 * 109.47502 * 89.99877 * 1 2 3 30 30 H 1.09004 * 109.47167 * 209.99329 * 1 2 3 31 31 H 1.09000 * 109.47367 * 329.99271 * 1 2 3 32 32 H 1.07996 * 126.58152 * 0.06551 * 3 2 1 33 33 H 1.08003 * 126.57956 * 180.02562 * 4 3 2 34 34 H 1.09009 * 109.46601 * 330.00111 * 6 5 4 35 35 H 1.08998 * 109.47035 * 210.00618 * 6 5 4 36 36 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 37 37 H 0.97000 * 120.00523 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47101 * 55.00002 * 13 11 10 39 39 H 1.08998 * 109.47012 * 175.00235 * 13 11 10 40 40 H 0.96993 * 120.00446 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.00293 * 0.02562 * 23 22 11 42 42 H 1.07997 * 120.00102 * 180.27842 * 24 23 22 43 43 H 1.07997 * 119.99225 * 179.83635 * 25 24 23 44 44 H 1.08004 * 119.99771 * 179.97438 * 26 25 24 45 45 H 1.07990 * 120.00306 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6378 -0.0019 7 7 5.1556 -1.9388 1.3792 8 6 6.2047 -2.7484 1.6251 9 8 6.8284 -3.2330 0.7008 10 7 6.5623 -3.0207 2.8957 11 6 7.7023 -3.9012 3.1631 12 1 8.4658 -3.7489 2.4002 13 6 8.2852 -3.5769 4.5400 14 6 8.8534 -2.1812 4.5289 15 1 8.8034 -1.5849 3.6298 16 6 9.4372 -1.6654 5.6665 17 7 9.9326 -0.4472 5.6570 18 14 9.5231 -2.6965 7.2218 19 1 10.7856 -3.4782 7.2284 20 1 9.4865 -1.8053 8.4092 21 1 8.3654 -3.6255 7.2644 22 6 7.2452 -5.3370 3.1366 23 6 6.0323 -5.6867 3.7001 24 6 5.6110 -7.0030 3.6720 25 6 6.4068 -7.9710 3.0883 26 6 7.6220 -7.6221 2.5294 27 6 8.0413 -6.3051 2.5536 28 8 2.2924 -1.0894 -0.0068 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.9665 2.1204 0.0010 33 1 4.5212 1.2434 -0.0004 34 1 5.6041 -1.1583 -0.5152 35 1 4.5108 -2.5629 -0.5165 36 1 4.6582 -1.5518 2.1166 37 1 6.0645 -2.6344 3.6332 38 1 7.4991 -3.6432 5.2921 39 1 9.0756 -4.2891 4.7768 40 1 10.3430 -0.0842 6.4574 41 1 5.4122 -4.9310 4.1591 42 1 4.6614 -7.2755 4.1083 43 1 6.0788 -8.9998 3.0686 44 1 8.2439 -8.3785 2.0737 45 1 8.9905 -6.0325 2.1166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601585665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:20 Heat of formation + Delta-G solvation = -15.455751 kcal Electronic energy + Delta-G solvation = -27019.425543 eV Core-core repulsion = 23195.495039 eV Total energy + Delta-G solvation = -3823.930505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.63279 -41.25545 -39.91095 -37.07701 -35.97648 -34.68673 -34.17073 -33.20465 -32.22889 -31.67707 -30.96039 -29.22410 -26.69503 -25.20793 -23.58778 -23.26204 -22.79829 -22.23207 -21.36126 -21.17203 -19.60167 -19.03839 -18.05316 -17.53495 -17.23819 -16.93383 -16.56571 -16.30955 -15.93847 -15.84287 -15.48013 -15.07483 -14.95886 -14.59363 -14.53799 -14.22451 -14.14737 -13.83127 -13.80661 -13.74715 -13.70428 -13.52091 -13.24799 -13.01832 -12.62402 -12.53176 -12.40273 -11.92347 -11.73235 -11.72245 -11.40570 -11.39133 -10.90268 -10.76625 -10.38270 -9.80761 -9.73205 -9.52597 -9.37243 -8.26660 -6.31194 0.47199 0.55303 0.57154 1.38295 1.39498 1.49229 1.50810 1.77709 2.05471 2.20382 2.36801 2.95543 3.08216 3.41794 3.53267 3.93110 3.95709 4.04712 4.06318 4.21736 4.25163 4.33484 4.37259 4.47056 4.59573 4.60561 4.72226 4.74568 4.77584 4.81384 4.86677 5.03488 5.04998 5.16008 5.19711 5.21413 5.27558 5.35894 5.55985 5.57144 5.59688 5.65616 5.66978 5.83556 6.04343 6.14925 6.19183 6.28384 6.75814 7.09420 7.32758 7.60473 8.89655 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.003490 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.162137 B = 8021.384788 C =10113.966389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.227 4.227 4 C -0.183 4.183 5 C -0.051 4.051 6 C 0.229 3.771 7 N -0.735 5.735 8 C 0.706 3.294 9 O -0.633 6.633 10 N -0.712 5.712 11 C 0.223 3.777 12 H 0.056 0.944 13 C -0.004 4.004 14 C -0.518 4.518 15 H 0.032 0.968 16 C 0.011 3.989 17 N -0.948 5.948 18 Si 0.945 3.055 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.242 1.242 22 C -0.100 4.100 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.130 4.130 28 O -0.186 6.186 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.407 0.593 37 H 0.405 0.595 38 H 0.037 0.963 39 H 0.031 0.969 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.870 -5.775 -7.493 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.245 4.245 4 C -0.203 4.203 5 C -0.101 4.101 6 C 0.106 3.894 7 N -0.393 5.393 8 C 0.406 3.594 9 O -0.515 6.515 10 N -0.364 5.364 11 C 0.118 3.882 12 H 0.075 0.925 13 C -0.042 4.042 14 C -0.556 4.556 15 H 0.050 0.950 16 C -0.186 4.186 17 N -0.589 5.589 18 Si 0.768 3.232 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.165 1.165 22 C -0.101 4.101 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.149 4.149 28 O -0.084 6.084 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.189 0.811 33 H 0.175 0.825 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.243 0.757 37 H 0.240 0.760 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.313 -6.383 -8.236 21.944 hybrid contribution 0.506 0.913 1.186 1.580 sum -18.807 -5.469 -7.050 20.816 Atomic orbital electron populations 1.20533 0.82227 1.05373 1.04868 1.23332 0.95654 0.83609 1.03393 1.21925 0.91968 1.00760 1.09895 1.21964 0.99541 0.93682 1.05071 1.22071 0.82857 0.94457 1.10702 1.19258 0.90329 0.96955 0.82881 1.45004 1.33246 1.52122 1.08898 1.15993 0.80612 0.79284 0.83550 1.90850 1.57455 1.58690 1.44484 1.44899 1.34152 1.51784 1.05601 1.19427 0.86252 0.84577 0.97971 0.92537 1.19734 0.96523 0.95382 0.92547 1.21196 1.37569 0.99053 0.97751 0.95005 1.25893 0.94398 0.95901 1.02412 1.70060 1.40850 1.17615 1.30329 0.85747 0.80020 0.78996 0.78402 1.19786 1.21173 1.16514 1.20432 0.96010 0.95359 0.98307 1.21071 0.95687 0.97337 0.99624 1.21431 1.00714 0.92429 0.99721 1.21471 0.94388 1.00540 0.98192 1.21385 0.97422 0.95504 0.99844 1.21188 0.99957 0.93972 0.99749 1.83968 1.16399 1.36220 1.71801 0.88549 0.90046 0.87209 0.81126 0.82542 0.88844 0.90603 0.75703 0.75969 0.94483 0.95084 0.92576 0.85977 0.83700 0.83249 0.83904 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.42 71.24 0.74 0.02 16 2 C -0.01 -0.18 7.32 24.83 0.18 0.01 16 3 C -0.23 -4.31 10.81 22.19 0.24 -4.07 16 4 C -0.18 -4.11 10.81 22.19 0.24 -3.87 16 5 C -0.05 -1.26 6.69 24.83 0.17 -1.09 16 6 C 0.23 6.22 6.20 85.63 0.53 6.75 16 7 N -0.74 -21.98 5.55 -482.29 -2.68 -24.66 16 8 C 0.71 26.96 8.52 179.05 1.53 28.49 16 9 O -0.63 -28.92 16.01 -3.98 -0.06 -28.99 16 10 N -0.71 -26.71 4.05 -461.41 -1.87 -28.58 16 11 C 0.22 9.25 2.11 44.24 0.09 9.35 16 12 H 0.06 2.71 7.44 -2.39 -0.02 2.69 16 13 C 0.00 -0.19 3.56 29.85 0.11 -0.08 16 14 C -0.52 -28.75 9.39 25.60 0.24 -28.51 16 15 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 16 C 0.01 0.63 5.47 84.66 0.46 1.09 16 17 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 18 Si 0.94 42.91 27.47 68.60 1.88 44.79 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 22 C -0.10 -3.59 4.91 -19.87 -0.10 -3.69 16 23 C -0.12 -3.67 9.32 22.27 0.21 -3.47 16 24 C -0.13 -3.17 10.05 22.27 0.22 -2.94 16 25 C -0.13 -3.04 10.05 22.27 0.22 -2.81 16 26 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16 27 C -0.13 -4.37 9.67 22.27 0.22 -4.16 16 28 O -0.19 -4.50 10.65 -2.48 -0.03 -4.53 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.41 10.48 8.48 -92.71 -0.79 9.69 16 37 H 0.40 13.61 8.62 -92.71 -0.80 12.81 16 38 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 39 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.12 3.50 7.73 -2.91 -0.02 3.47 16 42 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 43 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 45 H 0.11 3.85 8.04 -2.92 -0.02 3.83 16 Total: -1.00 -75.16 386.14 2.45 -72.71 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.63 Total: 39.37 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.53 Total: -12.07 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.25 Total: -111.29 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.09 Total: -33.51 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -75.16 2.45 -72.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601585665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.259 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds