Wall clock time and date at job start Tue Mar 31 2020 15:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34486 * 125.57149 * 2 1 4 4 C 1.46686 * 106.33543 * 179.77465 * 3 2 1 5 5 C 1.47249 * 126.94354 * 180.23795 * 4 3 2 6 6 O 1.21637 * 119.99769 * 180.15549 * 5 4 3 7 7 N 1.34776 * 119.99638 * 0.15261 * 5 4 3 8 8 C 1.39862 * 119.99575 * 175.38407 * 7 5 4 9 9 C 1.38946 * 120.04302 * 214.82458 * 8 7 5 10 10 C 1.38125 * 120.03634 * 179.76904 * 9 8 7 11 11 C 1.38209 * 120.12283 * 0.51243 * 10 9 8 12 12 C 1.38764 * 120.09244 * 359.74408 * 11 10 9 13 13 O 1.35899 * 120.02027 * 179.97438 * 12 11 10 14 14 C 1.42900 * 117.00381 * 0.02562 * 13 12 11 15 15 C 1.52997 * 109.47635 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47207 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00105 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00216 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47157 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47008 * 120.00252 * 20 18 16 23 23 H 1.48500 * 109.47158 * 239.99936 * 20 18 16 24 24 C 1.38620 * 119.95854 * 359.97438 * 12 11 10 25 25 C 1.36782 * 106.11723 * 0.36473 * 4 3 2 26 26 C 1.50695 * 125.80791 * 179.89629 * 25 4 3 27 27 N 1.34669 * 108.38664 * 359.63387 * 25 4 3 28 28 H 0.97006 * 124.84577 * 180.26454 * 27 25 4 29 29 H 1.08999 * 109.47478 * 270.00149 * 1 2 3 30 30 H 1.09001 * 109.47427 * 29.99975 * 1 2 3 31 31 H 1.08996 * 109.47085 * 150.00087 * 1 2 3 32 32 H 1.08006 * 126.83190 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00269 * 355.38473 * 7 5 4 34 34 H 1.07998 * 119.98074 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.93491 * 180.25412 * 10 9 8 36 36 H 1.08004 * 119.95255 * 179.76620 * 11 10 9 37 37 H 1.09005 * 109.46956 * 300.00292 * 14 13 12 38 38 H 1.09000 * 109.47253 * 59.99416 * 14 13 12 39 39 H 1.09005 * 109.47223 * 300.00172 * 15 14 13 40 40 H 1.08997 * 109.46618 * 59.99859 * 15 14 13 41 41 H 0.97001 * 120.00512 * 179.97438 * 19 18 16 42 42 H 1.08009 * 120.06259 * 180.02562 * 24 12 11 43 43 H 1.08995 * 109.47342 * 269.71423 * 26 25 4 44 44 H 1.08997 * 109.47472 * 149.71484 * 26 25 4 45 45 H 1.09004 * 109.46845 * 29.71709 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6742 0.6106 0.0055 5 6 4.8975 1.4302 0.0125 6 8 5.9891 0.8935 0.0137 7 7 4.8076 2.7750 0.0174 8 6 5.9653 3.5528 0.1214 9 6 5.9360 4.7539 0.8193 10 6 7.0807 5.5196 0.9261 11 6 8.2547 5.0988 0.3305 12 6 8.2885 3.9028 -0.3723 13 8 9.4436 3.4907 -0.9578 14 6 10.5847 4.3380 -0.8091 15 6 11.7812 3.7134 -1.5295 16 6 12.9843 4.6073 -1.3732 17 1 12.9037 5.5285 -0.8154 18 6 14.1883 4.2485 -1.9413 19 7 14.2866 3.1263 -2.6201 20 14 15.6794 5.3569 -1.7482 21 1 15.3083 6.5506 -0.9467 22 1 16.7624 4.6134 -1.0556 23 1 16.1531 5.7874 -3.0881 24 6 7.1434 3.1286 -0.4768 25 6 3.5998 -0.7552 0.0001 26 6 4.7722 -1.7020 0.0005 27 7 2.3007 -1.1098 0.0000 28 1 1.9757 -2.0238 0.0003 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9628 2.1234 0.0004 33 1 3.9401 3.2033 -0.0513 34 1 5.0188 5.0869 1.2822 35 1 7.0571 6.4509 1.4724 36 1 9.1471 5.7016 0.4124 37 1 10.3700 5.3156 -1.2409 38 1 10.8173 4.4517 0.2497 39 1 11.9957 2.7359 -1.0974 40 1 11.5488 3.5994 -2.5883 41 1 15.1334 2.8740 -3.0202 42 1 7.1680 2.1972 -1.0230 43 1 5.0552 -1.9304 -1.0270 44 1 4.4955 -2.6226 0.5143 45 1 5.6138 -1.2378 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603972364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:41 Heat of formation + Delta-G solvation = -18.233330 kcal Electronic energy + Delta-G solvation = -26196.823439 eV Core-core repulsion = 22372.772490 eV Total energy + Delta-G solvation = -3824.050950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70750 -40.21631 -38.93598 -36.97852 -34.46057 -33.28950 -32.96926 -31.60441 -30.74896 -29.60571 -29.32417 -28.79856 -25.42817 -24.91994 -23.44877 -22.29486 -21.75605 -20.82339 -20.29873 -19.63084 -18.09109 -17.34970 -16.41745 -16.09818 -15.91288 -15.63831 -15.31965 -15.23771 -15.10500 -14.54906 -14.39548 -14.19950 -13.85394 -13.58554 -13.50839 -13.27154 -12.90464 -12.85789 -12.62350 -12.60901 -12.42797 -12.27732 -11.81993 -11.67349 -11.56379 -11.32004 -10.89131 -10.75250 -10.49437 -10.16074 -9.73449 -9.69778 -9.56757 -9.21731 -9.19882 -8.40513 -8.38945 -8.08026 -7.69521 -6.04653 -4.08976 1.30899 1.70770 1.77180 2.02888 2.67665 3.17285 3.30456 3.37274 3.39244 3.41340 3.97266 4.10958 4.36516 4.46534 4.54725 4.71409 4.84627 4.95076 5.05373 5.11437 5.20865 5.31602 5.31782 5.38324 5.40474 5.45212 5.48760 5.60024 5.70891 5.82568 5.93472 6.09891 6.13097 6.14108 6.39920 6.45553 6.51135 6.61847 6.65687 6.70567 6.86355 7.06697 7.13217 7.47219 7.59305 7.72494 7.88892 8.17090 8.22545 8.30926 8.97006 9.54909 11.06999 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.002047 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.060643 B =13673.491753 C =14789.269879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.011 3.989 3 C -0.166 4.166 4 C -0.235 4.235 5 C 0.589 3.411 6 O -0.521 6.521 7 N -0.668 5.668 8 C 0.180 3.820 9 C -0.197 4.197 10 C -0.063 4.063 11 C -0.228 4.228 12 C 0.162 3.838 13 O -0.312 6.312 14 C 0.065 3.935 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.163 4.163 25 C 0.115 3.885 26 C -0.099 4.099 27 N -0.550 5.550 28 H 0.415 0.585 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.324 -5.543 7.042 32.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.245 4.245 5 C 0.379 3.621 6 O -0.397 6.397 7 N -0.312 5.312 8 C 0.086 3.914 9 C -0.218 4.218 10 C -0.081 4.081 11 C -0.247 4.247 12 C 0.114 3.886 13 O -0.225 6.225 14 C -0.009 4.009 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.184 4.184 25 C -0.003 4.003 26 C -0.157 4.157 27 N -0.146 5.146 28 H 0.252 0.748 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.244 0.756 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.163 0.837 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -30.476 -6.368 6.831 31.874 hybrid contribution 0.238 0.627 0.157 0.689 sum -30.237 -5.740 6.987 31.561 Atomic orbital electron populations 1.20335 0.87656 1.03441 1.02792 1.20211 0.93515 0.85963 1.10120 1.21775 0.90724 0.97792 1.08676 1.19964 0.92573 0.92268 1.19686 1.17443 0.88139 0.81171 0.75357 1.90810 1.28271 1.71944 1.48721 1.43181 1.08549 1.05954 1.73506 1.17290 0.86451 0.91421 0.96212 1.20625 0.99459 0.96756 1.04952 1.20634 0.91597 0.98608 0.97306 1.21365 1.00049 0.98355 1.04956 1.18985 0.87047 0.91687 0.90853 1.86187 1.17028 1.49372 1.69935 1.23327 0.83829 0.93168 1.00562 1.19134 0.88840 0.97083 0.96258 1.21020 0.94198 1.06666 1.34381 0.92297 1.25000 0.98975 0.95307 0.95009 1.69994 1.25804 1.22421 1.34531 0.86432 0.82497 0.80564 0.77887 1.19649 1.20882 1.20881 1.20441 0.90332 1.02607 1.05002 1.20361 0.84906 0.94228 1.00773 1.20644 0.94635 0.96491 1.03884 1.41559 1.05329 1.08877 1.58862 0.74835 0.90926 0.89912 0.91722 0.83739 0.75556 0.86208 0.85829 0.85176 0.93108 0.93109 0.95334 0.95380 0.92810 0.83707 0.90056 0.91738 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.00 0.37 0.08 16 2 C 0.01 0.07 7.13 -81.87 -0.58 -0.51 16 3 C -0.17 -1.38 10.45 -37.50 -0.39 -1.77 16 4 C -0.24 -2.63 6.29 -103.35 -0.65 -3.28 16 5 C 0.59 8.17 7.65 -12.60 -0.10 8.08 16 6 O -0.52 -9.05 12.24 5.25 0.06 -8.98 16 7 N -0.67 -8.14 5.33 -10.90 -0.06 -8.19 16 8 C 0.18 2.68 6.30 -83.74 -0.53 2.15 16 9 C -0.20 -2.55 9.96 -39.36 -0.39 -2.94 16 10 C -0.06 -0.86 10.03 -39.63 -0.40 -1.25 16 11 C -0.23 -3.80 9.04 -39.40 -0.36 -4.15 16 12 C 0.16 3.14 6.68 -39.25 -0.26 2.88 16 13 O -0.31 -7.02 10.13 -19.42 -0.20 -7.22 16 14 C 0.07 1.48 4.68 37.16 0.17 1.65 16 15 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 16 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.16 -2.97 8.63 -39.24 -0.34 -3.31 16 25 C 0.12 1.11 7.18 -81.88 -0.59 0.53 16 26 C -0.10 -0.89 9.89 36.00 0.36 -0.53 16 27 N -0.55 -3.70 5.90 -5.42 -0.03 -3.73 16 28 H 0.41 1.49 8.96 -40.82 -0.37 1.12 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.14 0.86 7.70 -52.48 -0.40 0.45 16 33 H 0.41 3.51 7.96 -40.82 -0.32 3.18 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.13 2.10 6.29 -52.48 -0.33 1.77 16 37 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 38 H 0.05 1.09 7.66 -51.93 -0.40 0.70 16 39 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.15 2.86 6.22 -52.48 -0.33 2.54 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 1.21 6.45 -51.93 -0.34 0.88 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -35.40 380.03 -9.25 -44.65 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.23 Total: 2.99 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -4.24 Total: -15.59 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.65 Total: -38.26 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.13 Total: -16.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.40 -9.25 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603972364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.418 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds