Wall clock time and date at job start Tue Mar 31 2020 15:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.87166 * 2 1 4 4 N 1.46499 * 109.47202 * 55.92961 * 3 2 1 5 5 C 1.34776 * 120.00244 * 185.14225 * 4 3 2 6 6 O 1.21665 * 119.99829 * 355.42105 * 5 4 3 7 7 C 1.46896 * 120.00080 * 175.41308 * 5 4 3 8 8 C 1.36117 * 125.43657 * 186.07781 * 7 5 4 9 9 C 1.41701 * 107.74917 * 179.90543 * 8 7 5 10 10 C 1.40023 * 133.35292 * 180.09410 * 9 8 7 11 11 C 1.36573 * 119.83056 * 180.28346 * 10 9 8 12 12 C 1.38861 * 120.60048 * 359.97438 * 11 10 9 13 13 C 1.37841 * 120.63263 * 0.04270 * 12 11 10 14 14 C 1.39080 * 119.81602 * 359.95149 * 13 12 11 15 15 N 1.37835 * 133.16326 * 180.02562 * 14 13 12 16 16 C 1.36889 * 125.62356 * 0.02796 * 15 14 13 17 17 H 1.07999 * 120.00319 * 224.95044 * 16 15 14 18 18 C 1.39011 * 119.99706 * 44.94602 * 16 15 14 19 19 N 1.31352 * 119.99973 * 6.04140 * 18 16 15 20 20 Si 1.86800 * 119.99742 * 186.03457 * 18 16 15 21 21 H 1.48495 * 109.47446 * 4.99362 * 20 18 16 22 22 H 1.48499 * 109.47064 * 124.99217 * 20 18 16 23 23 H 1.48501 * 109.47099 * 244.98906 * 20 18 16 24 24 C 1.54097 * 109.87609 * 238.99339 * 2 1 3 25 25 C 1.55152 * 104.02586 * 242.63986 * 24 2 1 26 26 C 1.54989 * 102.14654 * 20.78601 * 25 24 2 27 27 O 1.43739 * 109.87812 * 121.00771 * 2 1 3 28 28 H 1.08996 * 109.46746 * 55.61992 * 1 2 3 29 29 H 1.09001 * 109.46639 * 295.62161 * 1 2 3 30 30 H 1.08999 * 109.46945 * 175.62178 * 1 2 3 31 31 H 1.08995 * 109.47425 * 175.93157 * 3 2 1 32 32 H 1.09004 * 109.47535 * 295.93270 * 3 2 1 33 33 H 0.97006 * 120.00104 * 5.14200 * 4 3 2 34 34 H 1.08005 * 126.12532 * 0.02562 * 8 7 5 35 35 H 1.07997 * 120.08099 * 0.26776 * 10 9 8 36 36 H 1.07998 * 119.69767 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.67678 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.09179 * 179.97438 * 13 12 11 39 39 H 0.97003 * 119.99766 * 184.99546 * 19 18 16 40 40 H 1.08998 * 110.49283 * 1.28223 * 24 2 1 41 41 H 1.09001 * 110.48880 * 123.93222 * 24 2 1 42 42 H 1.09003 * 110.83563 * 262.58873 * 25 24 2 43 43 H 1.09001 * 110.95390 * 139.04047 * 25 24 2 44 44 H 1.08994 * 110.61897 * 204.53069 * 26 25 24 45 45 H 1.09002 * 110.75314 * 81.59550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0501 1.4388 0.0000 4 7 1.4884 2.1611 1.1441 5 6 1.7253 3.4798 1.2908 6 8 2.4727 4.0530 0.5208 7 6 1.0808 4.2250 2.3804 8 6 1.1467 5.5724 2.5619 9 6 0.3926 5.8899 3.7188 10 6 0.1049 7.0907 4.3790 11 6 -0.6672 7.0785 5.5055 12 6 -1.1716 5.8845 6.0038 13 6 -0.9018 4.6898 5.3716 14 6 -0.1180 4.6769 4.2227 15 7 0.3151 3.6692 3.3880 16 6 0.0334 2.3375 3.5330 17 1 0.8176 1.6039 3.4176 18 6 -1.2621 1.9293 3.8288 19 7 -2.2383 2.8079 3.8522 20 14 -1.6147 0.1314 4.1928 21 1 -0.3385 -0.6273 4.2219 22 1 -2.2891 0.0162 5.5108 23 1 -2.4968 -0.4240 3.1352 24 6 2.0540 -0.7465 -1.2421 25 6 2.8324 -1.9534 -0.6549 26 6 2.2281 -2.0704 0.7675 27 8 2.0188 -0.6964 1.1586 28 1 -0.3633 0.5803 -0.8481 29 1 -0.3633 0.4444 0.9266 30 1 -0.3633 -1.0247 -0.0785 31 1 3.1376 1.4322 0.0729 32 1 1.7510 1.9334 -0.9242 33 1 0.9460 1.6903 1.7961 34 1 1.6771 6.2741 1.9351 35 1 0.4928 8.0240 3.9986 36 1 -0.8874 8.0058 6.0133 37 1 -1.7809 5.8922 6.8955 38 1 -1.2983 3.7663 5.7670 39 1 -3.1277 2.5373 4.1290 40 1 1.2238 -1.0906 -1.8589 41 1 2.7197 -0.1054 -1.8199 42 1 3.9003 -1.7400 -0.6075 43 1 2.6437 -2.8577 -1.2335 44 1 2.9295 -2.5593 1.4435 45 1 1.2817 -2.6106 0.7418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610668920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:45 Heat of formation + Delta-G solvation = -25.877021 kcal Electronic energy + Delta-G solvation = -28813.336957 eV Core-core repulsion = 24988.954552 eV Total energy + Delta-G solvation = -3824.382405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49722 -39.90945 -38.25466 -35.88242 -34.58967 -33.54637 -32.32544 -31.15529 -30.64056 -29.00344 -28.12333 -26.89464 -25.44834 -24.96832 -22.63597 -21.78173 -20.95540 -20.15894 -19.92435 -19.17289 -18.16395 -16.57959 -16.41613 -15.78074 -15.59564 -15.25752 -14.93472 -14.80372 -14.51668 -14.30856 -13.92757 -13.71113 -13.34111 -13.03056 -12.90963 -12.85073 -12.54206 -12.42378 -12.19003 -11.91372 -11.81701 -11.72507 -11.67179 -11.41836 -11.19241 -11.15456 -10.92536 -10.76184 -10.68888 -10.58728 -10.17646 -9.75813 -9.64571 -9.34953 -9.25619 -8.60963 -8.42478 -7.19278 -6.82761 -6.51251 -4.69434 1.88160 2.77104 2.93232 2.97129 3.02467 3.19283 3.69069 3.72258 3.97845 4.29078 4.41536 4.57374 4.65787 4.72529 4.73615 4.96759 5.07738 5.10787 5.19480 5.46895 5.55568 5.63197 5.66704 5.69630 5.80115 5.85439 5.90100 5.95402 5.98127 5.99182 6.09229 6.20312 6.37926 6.46596 6.61056 6.72880 6.86852 6.93503 6.94697 7.11084 7.14339 7.15877 7.50907 7.60893 7.67933 7.95753 7.97916 8.31021 8.34510 8.71111 9.02475 9.29757 10.14903 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.004634 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.297442 B = 6041.102934 C = 7556.185334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 C 0.130 3.870 4 N -0.723 5.723 5 C 0.594 3.406 6 O -0.562 6.562 7 C -0.016 4.016 8 C -0.165 4.165 9 C -0.134 4.134 10 C -0.086 4.086 11 C -0.161 4.161 12 C -0.147 4.147 13 C -0.054 4.054 14 C 0.108 3.892 15 N -0.262 5.262 16 C -0.373 4.373 17 H 0.110 0.890 18 C 0.061 3.939 19 N -0.818 5.818 20 Si 0.917 3.083 21 H -0.255 1.255 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.143 4.143 25 C -0.154 4.154 26 C 0.044 3.956 27 O -0.359 6.359 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.420 0.580 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.282 0.718 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -8.586 -4.841 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.051 3.949 3 C 0.006 3.994 4 N -0.383 5.383 5 C 0.384 3.616 6 O -0.442 6.442 7 C -0.131 4.131 8 C -0.193 4.193 9 C -0.139 4.139 10 C -0.105 4.105 11 C -0.180 4.180 12 C -0.168 4.168 13 C -0.073 4.073 14 C -0.007 4.007 15 N 0.074 4.926 16 C -0.500 4.500 17 H 0.127 0.873 18 C -0.153 4.153 19 N -0.447 5.447 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.181 4.181 25 C -0.191 4.191 26 C -0.033 4.033 27 O -0.278 6.278 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.267 0.733 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.153 -8.533 -5.227 10.492 hybrid contribution -0.790 -1.187 0.265 1.450 sum 2.363 -9.720 -4.962 11.166 Atomic orbital electron populations 1.22301 0.94189 1.02147 1.03961 1.22376 0.94356 0.92371 0.85820 1.21398 0.98587 0.88861 0.90597 1.46665 1.54256 1.09302 1.28095 1.17282 0.79783 0.81310 0.83248 1.90702 1.37822 1.69706 1.45981 1.20135 1.06309 0.92973 0.93665 1.20383 1.06261 0.92838 0.99825 1.18039 1.03988 0.93230 0.98596 1.20052 0.99352 0.95505 0.95603 1.20263 1.02470 0.97020 0.98267 1.20575 1.03160 0.92336 1.00707 1.20073 0.96288 0.97554 0.93423 1.18246 1.01149 0.87296 0.93968 1.39935 1.33005 1.05128 1.14520 1.19604 0.94971 0.80662 1.54784 0.87323 1.25657 0.94690 1.00549 0.94437 1.69949 1.01969 1.35412 1.37351 0.85997 0.79899 0.81162 0.78934 1.17855 1.19635 1.19613 1.23022 1.00616 0.97065 0.97379 1.23177 1.00800 0.98425 0.96745 1.23534 0.99720 0.84820 0.95201 1.89012 1.85883 1.20191 1.32716 0.91247 0.90701 0.92350 0.91456 0.90654 0.73301 0.85021 0.87786 0.87961 0.87735 0.86764 0.90707 0.90149 0.89977 0.90432 0.90361 0.89085 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 8.31 37.16 0.31 -2.09 16 2 C 0.09 1.26 0.82 -90.05 -0.07 1.19 16 3 C 0.13 2.15 4.65 -4.05 -0.02 2.13 16 4 N -0.72 -14.76 5.10 -61.56 -0.31 -15.07 16 5 C 0.59 13.90 7.77 -12.76 -0.10 13.80 16 6 O -0.56 -13.77 16.85 5.22 0.09 -13.68 16 7 C -0.02 -0.40 6.77 -82.24 -0.56 -0.96 16 8 C -0.17 -3.97 10.55 -39.02 -0.41 -4.38 16 9 C -0.13 -3.21 6.16 -106.89 -0.66 -3.87 16 10 C -0.09 -1.80 10.06 -39.51 -0.40 -2.20 16 11 C -0.16 -3.15 9.97 -39.95 -0.40 -3.55 16 12 C -0.15 -3.02 10.02 -39.50 -0.40 -3.42 16 13 C -0.05 -1.26 8.55 -39.41 -0.34 -1.60 16 14 C 0.11 2.74 6.03 -83.84 -0.51 2.23 16 15 N -0.26 -6.67 2.80 -56.08 -0.16 -6.83 16 16 C -0.37 -9.08 7.73 -15.01 -0.12 -9.20 16 17 H 0.11 2.58 6.37 -52.49 -0.33 2.25 16 18 C 0.06 1.42 4.84 -17.47 -0.08 1.33 16 19 N -0.82 -20.27 10.67 55.50 0.59 -19.68 16 20 Si 0.92 17.87 29.56 -169.99 -5.02 12.84 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.14 -1.46 6.30 -25.02 -0.16 -1.62 16 25 C -0.15 -1.40 7.16 -24.54 -0.18 -1.58 16 26 C 0.04 0.49 7.67 38.21 0.29 0.78 16 27 O -0.36 -5.52 10.78 -35.23 -0.38 -5.90 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.28 6.90 -51.93 -0.36 0.92 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.42 8.84 3.08 -40.82 -0.13 8.71 16 34 H 0.13 2.91 8.06 -52.48 -0.42 2.49 16 35 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.11 2.73 6.69 -52.49 -0.35 2.38 16 39 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 41 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -29.29 364.57 -9.67 -38.96 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -6.18 Total: 16.84 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.78 Total: -12.98 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.12 Total: -41.58 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.29 Total: -19.58 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.02 Total: 12.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.29 -9.67 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610668920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.080 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds