Wall clock time and date at job start Tue Mar 31 2020 15:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.87166 * 2 1 4 4 N 1.46499 * 109.47202 * 55.92961 * 3 2 1 5 5 C 1.34776 * 120.00244 * 185.14225 * 4 3 2 6 6 O 1.21665 * 119.99829 * 355.42105 * 5 4 3 7 7 C 1.46896 * 120.00080 * 175.41308 * 5 4 3 8 8 C 1.36117 * 125.43657 * 186.07781 * 7 5 4 9 9 C 1.41701 * 107.74917 * 179.90543 * 8 7 5 10 10 C 1.40023 * 133.35292 * 180.09410 * 9 8 7 11 11 C 1.36573 * 119.83056 * 180.28346 * 10 9 8 12 12 C 1.38861 * 120.60048 * 359.97438 * 11 10 9 13 13 C 1.37841 * 120.63263 * 0.04270 * 12 11 10 14 14 C 1.39080 * 119.81602 * 359.95149 * 13 12 11 15 15 N 1.37835 * 133.16326 * 180.02562 * 14 13 12 16 16 C 1.36889 * 125.62356 * 0.02796 * 15 14 13 17 17 H 1.07999 * 120.00319 * 224.95044 * 16 15 14 18 18 C 1.39011 * 119.99706 * 44.94602 * 16 15 14 19 19 N 1.31352 * 119.99973 * 6.04140 * 18 16 15 20 20 Si 1.86800 * 119.99742 * 186.03457 * 18 16 15 21 21 H 1.48495 * 109.47446 * 4.99362 * 20 18 16 22 22 H 1.48499 * 109.47064 * 124.99217 * 20 18 16 23 23 H 1.48501 * 109.47099 * 244.98906 * 20 18 16 24 24 C 1.54097 * 109.87609 * 238.99339 * 2 1 3 25 25 C 1.55152 * 104.02586 * 242.63986 * 24 2 1 26 26 C 1.54989 * 102.14654 * 20.78601 * 25 24 2 27 27 O 1.43739 * 109.87812 * 121.00771 * 2 1 3 28 28 H 1.08996 * 109.46746 * 55.61992 * 1 2 3 29 29 H 1.09001 * 109.46639 * 295.62161 * 1 2 3 30 30 H 1.08999 * 109.46945 * 175.62178 * 1 2 3 31 31 H 1.08995 * 109.47425 * 175.93157 * 3 2 1 32 32 H 1.09004 * 109.47535 * 295.93270 * 3 2 1 33 33 H 0.97006 * 120.00104 * 5.14200 * 4 3 2 34 34 H 1.08005 * 126.12532 * 0.02562 * 8 7 5 35 35 H 1.07997 * 120.08099 * 0.26776 * 10 9 8 36 36 H 1.07998 * 119.69767 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.67678 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.09179 * 179.97438 * 13 12 11 39 39 H 0.97003 * 119.99766 * 184.99546 * 19 18 16 40 40 H 1.08998 * 110.49283 * 1.28223 * 24 2 1 41 41 H 1.09001 * 110.48880 * 123.93222 * 24 2 1 42 42 H 1.09003 * 110.83563 * 262.58873 * 25 24 2 43 43 H 1.09001 * 110.95390 * 139.04047 * 25 24 2 44 44 H 1.08994 * 110.61897 * 204.53069 * 26 25 24 45 45 H 1.09002 * 110.75314 * 81.59550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0501 1.4388 0.0000 4 7 1.4884 2.1611 1.1441 5 6 1.7253 3.4798 1.2908 6 8 2.4727 4.0530 0.5208 7 6 1.0808 4.2250 2.3804 8 6 1.1467 5.5724 2.5619 9 6 0.3926 5.8899 3.7188 10 6 0.1049 7.0907 4.3790 11 6 -0.6672 7.0785 5.5055 12 6 -1.1716 5.8845 6.0038 13 6 -0.9018 4.6898 5.3716 14 6 -0.1180 4.6769 4.2227 15 7 0.3151 3.6692 3.3880 16 6 0.0334 2.3375 3.5330 17 1 0.8176 1.6039 3.4176 18 6 -1.2621 1.9293 3.8288 19 7 -2.2383 2.8079 3.8522 20 14 -1.6147 0.1314 4.1928 21 1 -0.3385 -0.6273 4.2219 22 1 -2.2891 0.0162 5.5108 23 1 -2.4968 -0.4240 3.1352 24 6 2.0540 -0.7465 -1.2421 25 6 2.8324 -1.9534 -0.6549 26 6 2.2281 -2.0704 0.7675 27 8 2.0188 -0.6964 1.1586 28 1 -0.3633 0.5803 -0.8481 29 1 -0.3633 0.4444 0.9266 30 1 -0.3633 -1.0247 -0.0785 31 1 3.1376 1.4322 0.0729 32 1 1.7510 1.9334 -0.9242 33 1 0.9460 1.6903 1.7961 34 1 1.6771 6.2741 1.9351 35 1 0.4928 8.0240 3.9986 36 1 -0.8874 8.0058 6.0133 37 1 -1.7809 5.8922 6.8955 38 1 -1.2983 3.7663 5.7670 39 1 -3.1277 2.5373 4.1290 40 1 1.2238 -1.0906 -1.8589 41 1 2.7197 -0.1054 -1.8199 42 1 3.9003 -1.7400 -0.6075 43 1 2.6437 -2.8577 -1.2335 44 1 2.9295 -2.5593 1.4435 45 1 1.2817 -2.6106 0.7418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610668920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:44 Heat of formation + Delta-G solvation = -42.074070 kcal Electronic energy + Delta-G solvation = -28814.039314 eV Core-core repulsion = 24988.954552 eV Total energy + Delta-G solvation = -3825.084762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24501 -41.05711 -39.91226 -37.60044 -36.11479 -35.30925 -33.38230 -32.52376 -32.18576 -30.69682 -29.82596 -28.10836 -26.85185 -26.58250 -24.21196 -22.77889 -22.60872 -21.67748 -21.32960 -20.83773 -19.89639 -18.20579 -17.62860 -17.40542 -16.82928 -16.64609 -16.47853 -16.34164 -16.15881 -15.83053 -15.24522 -14.98916 -14.79825 -14.72863 -14.61987 -14.21028 -14.08549 -13.63368 -13.60288 -13.48740 -13.39546 -13.13110 -12.84016 -12.77877 -12.60488 -12.34235 -12.17183 -12.03948 -11.95241 -11.91421 -11.57985 -11.46243 -11.14167 -11.02676 -10.68062 -10.39494 -10.07937 -8.97598 -8.62596 -8.29039 -6.56114 0.11074 1.10356 1.32771 1.34241 1.40303 1.48360 2.06986 2.26240 2.47189 2.78559 2.82969 2.93391 3.36251 3.49150 3.70589 3.78237 4.00805 4.06551 4.12890 4.23222 4.37173 4.43404 4.49465 4.53975 4.56291 4.63303 4.74358 4.77951 4.83085 4.85120 4.88509 4.93358 5.00944 5.05135 5.06787 5.18775 5.20867 5.25194 5.35626 5.44938 5.46222 5.73897 5.90265 5.96338 6.00022 6.20239 6.25239 6.55076 6.57855 6.90238 7.24453 7.47213 8.37179 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.004634 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.297442 B = 6041.102934 C = 7556.185334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 C 0.123 3.877 4 N -0.716 5.716 5 C 0.588 3.412 6 O -0.583 6.583 7 C -0.047 4.047 8 C -0.176 4.176 9 C -0.156 4.156 10 C -0.091 4.091 11 C -0.153 4.153 12 C -0.135 4.135 13 C -0.083 4.083 14 C 0.079 3.921 15 N -0.275 5.275 16 C -0.389 4.389 17 H 0.105 0.895 18 C 0.030 3.970 19 N -0.848 5.848 20 Si 0.979 3.021 21 H -0.253 1.253 22 H -0.266 1.266 23 H -0.263 1.263 24 C -0.138 4.138 25 C -0.144 4.144 26 C 0.033 3.967 27 O -0.394 6.394 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.418 0.582 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.286 0.714 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -9.395 -4.863 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.052 3.948 3 C 0.000 4.000 4 N -0.374 5.374 5 C 0.377 3.623 6 O -0.465 6.465 7 C -0.161 4.161 8 C -0.204 4.204 9 C -0.160 4.160 10 C -0.110 4.110 11 C -0.172 4.172 12 C -0.155 4.155 13 C -0.103 4.103 14 C -0.036 4.036 15 N 0.060 4.940 16 C -0.515 4.515 17 H 0.123 0.877 18 C -0.181 4.181 19 N -0.477 5.477 20 Si 0.799 3.201 21 H -0.177 1.177 22 H -0.190 1.190 23 H -0.187 1.187 24 C -0.176 4.176 25 C -0.181 4.181 26 C -0.043 4.043 27 O -0.314 6.314 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.681 -9.361 -5.257 11.066 hybrid contribution -0.650 -0.849 0.344 1.123 sum 2.031 -10.210 -4.914 11.511 Atomic orbital electron populations 1.22298 0.94576 1.03263 1.02359 1.22393 0.94009 0.90902 0.87456 1.21696 0.98390 0.90630 0.89293 1.46695 1.53421 1.08445 1.28854 1.17289 0.79785 0.82258 0.82972 1.90660 1.38879 1.70293 1.46682 1.20541 1.07203 0.93846 0.94526 1.20630 1.06520 0.92948 1.00297 1.18425 1.04424 0.94247 0.98915 1.20474 0.99209 0.95512 0.95763 1.20748 1.00653 0.98318 0.97458 1.21035 1.01936 0.91605 1.00920 1.20159 0.97725 0.98448 0.93983 1.18733 1.02105 0.87897 0.94850 1.40123 1.33433 1.05569 1.14851 1.19778 0.95509 0.80607 1.55635 0.87744 1.26417 0.93927 1.04216 0.93570 1.70036 1.02391 1.37305 1.38015 0.85091 0.79720 0.76314 0.78970 1.17674 1.19021 1.18746 1.23038 1.01562 0.97184 0.95778 1.23164 1.00503 0.98985 0.95495 1.23816 1.00743 0.82957 0.96794 1.88978 1.86075 1.22452 1.33930 0.90518 0.94232 0.90168 0.91760 0.90013 0.73617 0.83974 0.84795 0.83504 0.84446 0.88139 0.90369 0.88139 0.89273 0.90307 0.87540 0.88191 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 8.31 71.99 0.60 -4.08 16 2 C 0.09 2.51 0.82 -10.42 -0.01 2.50 16 3 C 0.12 4.16 4.65 86.38 0.40 4.56 16 4 N -0.72 -30.56 5.10 -466.89 -2.38 -32.94 16 5 C 0.59 28.84 7.77 86.51 0.67 29.51 16 6 O -0.58 -29.66 16.85 -4.24 -0.07 -29.73 16 7 C -0.05 -2.44 6.77 39.91 0.27 -2.17 16 8 C -0.18 -8.75 10.55 22.63 0.24 -8.51 16 9 C -0.16 -7.57 6.16 -21.33 -0.13 -7.70 16 10 C -0.09 -3.64 10.06 22.31 0.22 -3.42 16 11 C -0.15 -5.51 9.97 22.03 0.22 -5.29 16 12 C -0.13 -5.28 10.02 22.33 0.22 -5.05 16 13 C -0.08 -3.96 8.55 22.38 0.19 -3.77 16 14 C 0.08 4.10 6.03 39.06 0.24 4.33 16 15 N -0.27 -14.67 2.80 -331.34 -0.93 -15.60 16 16 C -0.39 -19.78 7.73 84.09 0.65 -19.13 16 17 H 0.11 5.24 6.37 -2.91 -0.02 5.22 16 18 C 0.03 1.43 4.84 84.95 0.41 1.84 16 19 N -0.85 -43.16 10.67 21.67 0.23 -42.93 16 20 Si 0.98 37.19 29.56 68.60 2.03 39.22 16 21 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.14 -2.50 6.30 31.70 0.20 -2.30 16 25 C -0.14 -2.22 7.16 32.01 0.23 -1.99 16 26 C 0.03 0.67 7.67 72.66 0.56 1.23 16 27 O -0.39 -12.01 10.78 -148.98 -1.61 -13.62 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.37 6.90 -2.39 -0.02 1.36 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.42 18.47 3.08 -92.70 -0.29 18.19 16 34 H 0.14 6.50 8.06 -2.91 -0.02 6.48 16 35 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 36 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 38 H 0.10 4.95 6.69 -2.91 -0.02 4.93 16 39 H 0.29 13.43 8.31 -92.71 -0.77 12.66 16 40 H 0.10 1.44 7.70 -2.39 -0.02 1.42 16 41 H 0.09 1.51 7.70 -2.39 -0.02 1.49 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -66.54 364.57 3.17 -63.37 By element: Atomic # 1 Polarization: 50.94 SS G_CDS: 0.72 Total: 51.67 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 5.18 Total: -19.44 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -3.08 Total: -91.47 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.68 Total: -43.35 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -66.54 3.17 -63.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610668920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.292 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds