Wall clock time and date at job start Tue Mar 31 2020 15:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34307 * 125.78856 * 2 1 4 4 C 1.34306 * 109.47824 * 180.02562 * 3 2 1 5 5 C 1.34521 * 108.41600 * 359.72646 * 4 3 2 6 6 C 1.34513 * 125.79053 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.57922 * 359.96569 * 6 2 1 8 8 N 1.46491 * 109.47322 * 79.99851 * 7 6 2 9 9 C 1.34779 * 120.00118 * 180.02562 * 8 7 6 10 10 O 1.21591 * 119.99714 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00153 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00162 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46620 * 35.00730 * 12 11 9 14 14 C 1.52996 * 109.46928 * 155.00175 * 12 11 9 15 15 C 1.50702 * 109.47159 * 295.00193 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.50695 * 109.47337 * 275.00418 * 12 11 9 24 24 C 1.38233 * 120.00093 * 319.72581 * 23 12 11 25 25 C 1.38241 * 120.00133 * 179.79073 * 24 23 12 26 26 C 1.38229 * 119.99727 * 0.43877 * 25 24 23 27 27 C 1.38236 * 119.99976 * 359.81143 * 26 25 24 28 28 C 1.38231 * 120.00171 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47334 * 269.95609 * 1 2 3 30 30 H 1.08999 * 109.47560 * 29.95744 * 1 2 3 31 31 H 1.09003 * 109.47473 * 149.95698 * 1 2 3 32 32 H 1.07995 * 125.78830 * 180.02562 * 4 3 2 33 33 H 1.08001 * 126.57482 * 180.26320 * 5 4 3 34 34 H 1.09004 * 109.47076 * 319.99741 * 7 6 2 35 35 H 1.08996 * 109.46567 * 200.00282 * 7 6 2 36 36 H 0.97005 * 120.00056 * 359.97438 * 8 7 6 37 37 H 0.97001 * 119.99887 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47066 * 175.00396 * 14 12 11 39 39 H 1.08994 * 109.47405 * 55.00227 * 14 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.00198 * 359.97438 * 24 23 12 42 42 H 1.07998 * 119.99639 * 180.27390 * 25 24 23 43 43 H 1.07997 * 119.99947 * 179.83467 * 26 25 24 44 44 H 1.08002 * 120.00040 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.00083 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0895 0.0000 4 6 3.5814 0.7123 -0.0006 5 6 3.6308 -0.6320 0.0052 6 6 2.2936 -1.0911 -0.0005 7 6 1.8372 -2.5273 -0.0004 8 7 1.4600 -2.9200 -1.3604 9 6 1.0173 -4.1697 -1.6027 10 8 0.9314 -4.9714 -0.6926 11 7 0.6698 -4.5308 -2.8538 12 6 0.1891 -5.8894 -3.1174 13 1 -0.3922 -6.2408 -2.2649 14 6 -0.6918 -5.8850 -4.3683 15 6 -1.9305 -5.0673 -4.1074 16 1 -2.0749 -4.5974 -3.1458 17 6 -2.8767 -4.9139 -5.0986 18 7 -2.7007 -5.4859 -6.2698 19 14 -4.4084 -3.8941 -4.7778 20 1 -4.3675 -3.3619 -3.3921 21 1 -4.4614 -2.7643 -5.7402 22 1 -5.6139 -4.7448 -4.9464 23 6 1.3659 -6.8053 -3.3349 24 6 2.4556 -6.3691 -4.0651 25 6 3.5369 -7.2078 -4.2609 26 6 3.5247 -8.4857 -3.7342 27 6 2.4327 -8.9237 -3.0084 28 6 1.3534 -8.0835 -2.8088 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3634 -0.8896 -0.5145 32 1 4.4335 1.3757 -0.0003 33 1 4.5212 -1.2432 0.0103 34 1 0.9772 -2.6352 0.6606 35 1 2.6477 -3.1660 0.3507 36 1 1.5282 -2.2803 -2.0864 37 1 0.7387 -3.8913 -3.5800 38 1 -0.9768 -6.9076 -4.6155 39 1 -0.1384 -5.4507 -5.2008 40 1 -3.3666 -5.3782 -6.9670 41 1 2.4634 -5.3720 -4.4801 42 1 4.3901 -6.8653 -4.8277 43 1 4.3683 -9.1419 -3.8895 44 1 2.4230 -9.9223 -2.5972 45 1 0.5005 -8.4256 -2.2414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610972233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:27 Heat of formation + Delta-G solvation = -0.160000 kcal Electronic energy + Delta-G solvation = -27300.539750 eV Core-core repulsion = 23477.272519 eV Total energy + Delta-G solvation = -3823.267231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.79945 -39.72007 -38.55238 -35.75641 -34.80296 -32.90052 -32.57386 -32.01907 -30.86539 -30.38814 -28.79659 -27.49284 -25.54301 -24.58100 -22.24873 -21.91570 -21.65404 -20.76051 -20.02119 -19.68480 -18.05033 -17.10174 -16.68697 -16.37953 -16.13076 -15.68250 -15.20939 -14.72928 -14.59744 -14.51736 -14.40882 -13.73330 -13.65172 -13.39979 -13.12762 -12.99177 -12.92793 -12.82483 -12.56891 -12.42769 -12.17740 -12.08291 -11.70195 -11.49777 -11.10816 -10.89963 -10.71495 -10.57212 -10.42530 -10.08552 -9.75013 -9.60271 -9.25759 -8.86223 -8.56229 -8.49584 -8.43892 -8.24074 -8.12253 -6.07899 -4.10750 1.50305 1.83270 1.85647 2.26463 2.81580 3.26082 3.34874 3.38807 3.39403 3.75767 4.26598 4.40723 4.53294 4.65268 4.76470 4.86083 5.13491 5.29003 5.30877 5.32142 5.32440 5.40135 5.42813 5.54905 5.60025 5.63920 5.73566 5.92377 5.96252 5.99382 6.06828 6.20609 6.32039 6.41072 6.47802 6.62909 6.75592 6.89512 6.90410 6.94797 7.01423 7.16178 7.38348 7.46025 7.54784 7.71728 7.89578 8.28140 8.57598 8.95555 9.15399 9.53999 11.02750 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007595 B = 0.004213 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.818003 B = 6644.954678 C = 9608.718947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.013 3.987 3 O -0.177 6.177 4 C -0.050 4.050 5 C -0.193 4.193 6 C -0.200 4.200 7 C 0.215 3.785 8 N -0.749 5.749 9 C 0.704 3.296 10 O -0.599 6.599 11 N -0.716 5.716 12 C 0.202 3.798 13 H 0.086 0.914 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.070 4.070 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.202 0.798 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.394 0.606 37 H 0.396 0.604 38 H 0.035 0.965 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.008 8.022 9.089 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 O -0.073 6.073 4 C -0.117 4.117 5 C -0.213 4.213 6 C -0.202 4.202 7 C 0.091 3.909 8 N -0.406 5.406 9 C 0.404 3.596 10 O -0.477 6.477 11 N -0.369 5.369 12 C 0.097 3.903 13 H 0.104 0.896 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.071 4.071 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.219 0.781 33 H 0.167 0.833 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.227 0.773 37 H 0.230 0.770 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.714 7.530 9.765 17.712 hybrid contribution -0.476 1.030 -0.692 1.329 sum 12.238 8.560 9.074 17.475 Atomic orbital electron populations 1.20420 0.84755 1.04698 1.03842 1.22437 0.94071 0.83749 1.03608 1.84034 1.16934 1.34870 1.71423 1.23943 0.84245 0.95967 1.07545 1.21743 0.97650 0.94708 1.07180 1.20255 0.93126 0.95619 1.11154 1.19206 0.99757 0.88401 0.83574 1.45169 1.72429 1.12719 1.10304 1.15990 0.78008 0.81783 0.83866 1.90876 1.61431 1.51429 1.44012 1.45131 1.69322 1.14920 1.07480 1.20104 0.90420 0.78049 1.01680 0.89568 1.19403 0.93399 0.98559 0.90069 1.21182 1.03981 1.31339 0.99002 0.92298 1.24991 0.98240 0.95859 0.95112 1.69974 1.35388 1.43933 1.03851 0.86552 0.83255 0.80059 0.78233 1.19756 1.21108 1.21011 1.20607 0.96119 0.95118 0.95280 1.20890 0.93478 0.99542 0.98558 1.21029 0.98373 0.94436 1.00585 1.20977 0.98434 0.96243 0.99761 1.21034 0.94171 0.99344 0.99605 1.21020 0.98326 0.93771 0.99522 0.89826 0.90352 0.88658 0.78134 0.83347 0.91113 0.91128 0.77252 0.77005 0.94712 0.95783 0.92974 0.86685 0.86867 0.86933 0.86667 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.20 36.00 0.37 -0.37 16 2 C 0.01 0.14 7.32 -35.63 -0.26 -0.12 16 3 O -0.18 -1.92 10.65 5.69 0.06 -1.86 16 4 C -0.05 -0.44 12.09 29.42 0.36 -0.09 16 5 C -0.19 -1.93 10.87 -39.70 -0.43 -2.36 16 6 C -0.20 -2.26 5.53 -104.74 -0.58 -2.84 16 7 C 0.21 2.78 5.69 -5.20 -0.03 2.75 16 8 N -0.75 -10.58 5.55 -66.42 -0.37 -10.95 16 9 C 0.70 12.81 8.52 -86.92 -0.74 12.07 16 10 O -0.60 -13.09 16.01 5.29 0.08 -13.01 16 11 N -0.72 -13.06 4.05 -59.81 -0.24 -13.30 16 12 C 0.20 4.17 2.11 -69.08 -0.15 4.02 16 13 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 14 C 0.02 0.55 4.49 -27.88 -0.13 0.43 16 15 C -0.52 -13.60 8.84 -34.44 -0.30 -13.91 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.07 -1.32 4.91 -104.63 -0.51 -1.84 16 24 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.14 -1.99 10.05 -39.59 -0.40 -2.39 16 27 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 28 C -0.11 -1.92 9.67 -39.59 -0.38 -2.30 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16 32 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.39 4.83 8.48 -40.82 -0.35 4.48 16 37 H 0.40 6.61 8.62 -40.82 -0.35 6.26 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.12 1.86 7.73 -52.49 -0.41 1.46 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.12 2.05 8.04 -52.48 -0.42 1.63 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -32.56 388.92 -9.85 -42.42 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.51 Total: 11.99 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -4.45 Total: -12.26 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.13 Total: -49.03 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.15 Total: -14.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.56 -9.85 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.255 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds