Wall clock time and date at job start Tue Mar 31 2020 15:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34307 * 125.78856 * 2 1 4 4 C 1.34306 * 109.47824 * 180.02562 * 3 2 1 5 5 C 1.34521 * 108.41600 * 359.72646 * 4 3 2 6 6 C 1.34513 * 125.79053 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.57922 * 359.96569 * 6 2 1 8 8 N 1.46491 * 109.47322 * 79.99851 * 7 6 2 9 9 C 1.34779 * 120.00118 * 180.02562 * 8 7 6 10 10 O 1.21591 * 119.99714 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00153 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00162 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46620 * 35.00730 * 12 11 9 14 14 C 1.52996 * 109.46928 * 155.00175 * 12 11 9 15 15 C 1.50702 * 109.47159 * 295.00193 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.50695 * 109.47337 * 275.00418 * 12 11 9 24 24 C 1.38233 * 120.00093 * 319.72581 * 23 12 11 25 25 C 1.38241 * 120.00133 * 179.79073 * 24 23 12 26 26 C 1.38229 * 119.99727 * 0.43877 * 25 24 23 27 27 C 1.38236 * 119.99976 * 359.81143 * 26 25 24 28 28 C 1.38231 * 120.00171 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47334 * 269.95609 * 1 2 3 30 30 H 1.08999 * 109.47560 * 29.95744 * 1 2 3 31 31 H 1.09003 * 109.47473 * 149.95698 * 1 2 3 32 32 H 1.07995 * 125.78830 * 180.02562 * 4 3 2 33 33 H 1.08001 * 126.57482 * 180.26320 * 5 4 3 34 34 H 1.09004 * 109.47076 * 319.99741 * 7 6 2 35 35 H 1.08996 * 109.46567 * 200.00282 * 7 6 2 36 36 H 0.97005 * 120.00056 * 359.97438 * 8 7 6 37 37 H 0.97001 * 119.99887 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47066 * 175.00396 * 14 12 11 39 39 H 1.08994 * 109.47405 * 55.00227 * 14 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.00198 * 359.97438 * 24 23 12 42 42 H 1.07998 * 119.99639 * 180.27390 * 25 24 23 43 43 H 1.07997 * 119.99947 * 179.83467 * 26 25 24 44 44 H 1.08002 * 120.00040 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.00083 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0895 0.0000 4 6 3.5814 0.7123 -0.0006 5 6 3.6308 -0.6320 0.0052 6 6 2.2936 -1.0911 -0.0005 7 6 1.8372 -2.5273 -0.0004 8 7 1.4600 -2.9200 -1.3604 9 6 1.0173 -4.1697 -1.6027 10 8 0.9314 -4.9714 -0.6926 11 7 0.6698 -4.5308 -2.8538 12 6 0.1891 -5.8894 -3.1174 13 1 -0.3922 -6.2408 -2.2649 14 6 -0.6918 -5.8850 -4.3683 15 6 -1.9305 -5.0673 -4.1074 16 1 -2.0749 -4.5974 -3.1458 17 6 -2.8767 -4.9139 -5.0986 18 7 -2.7007 -5.4859 -6.2698 19 14 -4.4084 -3.8941 -4.7778 20 1 -4.3675 -3.3619 -3.3921 21 1 -4.4614 -2.7643 -5.7402 22 1 -5.6139 -4.7448 -4.9464 23 6 1.3659 -6.8053 -3.3349 24 6 2.4556 -6.3691 -4.0651 25 6 3.5369 -7.2078 -4.2609 26 6 3.5247 -8.4857 -3.7342 27 6 2.4327 -8.9237 -3.0084 28 6 1.3534 -8.0835 -2.8088 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3634 -0.8896 -0.5145 32 1 4.4335 1.3757 -0.0003 33 1 4.5212 -1.2432 0.0103 34 1 0.9772 -2.6352 0.6606 35 1 2.6477 -3.1660 0.3507 36 1 1.5282 -2.2803 -2.0864 37 1 0.7387 -3.8913 -3.5800 38 1 -0.9768 -6.9076 -4.6155 39 1 -0.1384 -5.4507 -5.2008 40 1 -3.3666 -5.3782 -6.9670 41 1 2.4634 -5.3720 -4.4801 42 1 4.3901 -6.8653 -4.8277 43 1 4.3683 -9.1419 -3.8895 44 1 2.4230 -9.9223 -2.5972 45 1 0.5005 -8.4256 -2.2414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610972233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:26 Heat of formation + Delta-G solvation = -19.324996 kcal Electronic energy + Delta-G solvation = -27301.370807 eV Core-core repulsion = 23477.272519 eV Total energy + Delta-G solvation = -3824.098288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.58981 -41.18633 -39.87401 -37.10577 -36.22849 -34.71184 -33.87610 -32.77280 -32.21865 -31.65600 -30.51725 -28.51722 -26.80604 -26.02912 -23.77323 -23.36291 -22.43829 -22.19258 -21.28317 -20.80789 -19.36681 -18.62138 -17.93987 -17.61746 -17.29253 -16.97942 -16.50840 -16.48163 -15.93993 -15.83052 -15.45684 -15.00915 -14.89868 -14.70351 -14.41944 -14.16802 -14.07511 -13.83115 -13.65214 -13.64451 -13.52133 -13.41085 -13.14200 -12.90785 -12.61128 -12.55966 -12.45379 -12.11730 -11.85484 -11.56678 -11.36886 -11.28690 -10.75112 -10.57217 -10.27958 -9.75399 -9.68262 -9.48610 -9.33309 -8.18439 -6.28125 0.53145 0.58314 0.70675 1.39204 1.41047 1.42130 1.53515 2.05457 2.13441 2.27424 2.41534 2.98405 3.15408 3.51352 3.76324 3.83863 3.93135 4.03288 4.06239 4.22955 4.34035 4.39532 4.46633 4.56081 4.62788 4.65071 4.68197 4.78610 4.81748 4.84172 4.87459 5.08472 5.15261 5.22183 5.30869 5.31898 5.45584 5.49437 5.55847 5.63406 5.64979 5.66773 5.80331 5.90930 6.13505 6.17599 6.18798 6.23676 6.84642 7.18985 7.40805 7.69213 8.92536 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007595 B = 0.004213 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.818003 B = 6644.954678 C = 9608.718947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.005 3.995 3 O -0.185 6.185 4 C -0.039 4.039 5 C -0.210 4.210 6 C -0.212 4.212 7 C 0.220 3.780 8 N -0.731 5.731 9 C 0.703 3.297 10 O -0.637 6.637 11 N -0.712 5.712 12 C 0.219 3.781 13 H 0.057 0.943 14 C 0.038 3.962 15 C -0.526 4.526 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.283 1.283 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.133 4.133 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.240 0.760 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.405 0.595 37 H 0.404 0.596 38 H 0.005 0.995 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.751 9.229 9.219 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 O -0.082 6.082 4 C -0.105 4.105 5 C -0.230 4.230 6 C -0.214 4.214 7 C 0.096 3.904 8 N -0.387 5.387 9 C 0.403 3.597 10 O -0.519 6.519 11 N -0.365 5.365 12 C 0.113 3.887 13 H 0.075 0.925 14 C 0.001 3.999 15 C -0.564 4.564 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.567 5.567 19 Si 0.782 3.218 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.209 1.209 23 C -0.098 4.098 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.152 4.152 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.178 0.822 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.239 0.761 38 H 0.023 0.977 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.137 0.863 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.474 8.782 9.891 19.608 hybrid contribution -0.931 0.633 -0.717 1.334 sum 13.544 9.415 9.174 18.874 Atomic orbital electron populations 1.20448 0.84017 1.04621 1.04600 1.22652 0.94725 0.83746 1.03493 1.84052 1.17805 1.34838 1.71466 1.24689 0.84309 0.96231 1.05257 1.21956 0.97384 0.95562 1.08052 1.20150 0.94227 0.94529 1.12471 1.19158 0.99177 0.89636 0.82430 1.45040 1.70996 1.11330 1.11375 1.16072 0.77909 0.82568 0.83122 1.90844 1.63091 1.52912 1.45027 1.44927 1.69233 1.14329 1.07963 1.19573 0.90866 0.79691 0.98522 0.92507 1.19139 0.93335 0.96184 0.91291 1.21420 1.04938 1.31310 0.98694 0.92826 1.25773 1.01235 0.96939 0.94836 1.70083 1.36577 1.45282 1.04740 0.85523 0.79314 0.78590 0.78341 1.19239 1.20151 1.20887 1.20495 0.96302 0.95466 0.97540 1.21044 0.93788 1.00345 0.98690 1.21425 0.98398 0.94406 1.00128 1.21455 0.98946 0.96398 0.97995 1.21384 0.93436 1.00158 0.99213 1.21184 0.99479 0.94112 1.00414 0.88682 0.89188 0.89892 0.74373 0.82196 0.91911 0.91789 0.75930 0.76136 0.97713 0.96995 0.92783 0.86341 0.83726 0.83149 0.83859 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.20 71.23 0.73 -0.69 16 2 C 0.01 0.11 7.32 24.83 0.18 0.29 16 3 O -0.19 -3.66 10.65 -2.55 -0.03 -3.69 16 4 C -0.04 -0.59 12.09 66.97 0.81 0.22 16 5 C -0.21 -3.84 10.87 22.19 0.24 -3.59 16 6 C -0.21 -4.63 5.53 -19.94 -0.11 -4.74 16 7 C 0.22 5.73 5.69 85.63 0.49 6.21 16 8 N -0.73 -20.80 5.55 -482.31 -2.68 -23.48 16 9 C 0.70 26.35 8.52 179.05 1.53 27.88 16 10 O -0.64 -28.92 16.01 -4.00 -0.06 -28.98 16 11 N -0.71 -26.91 4.05 -461.41 -1.87 -28.77 16 12 C 0.22 9.53 2.11 44.24 0.09 9.62 16 13 H 0.06 2.77 7.44 -2.39 -0.02 2.75 16 14 C 0.04 1.92 4.49 29.85 0.13 2.05 16 15 C -0.53 -28.53 8.84 25.60 0.23 -28.31 16 16 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 17 C 0.01 0.59 5.46 84.66 0.46 1.05 16 18 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 19 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 C -0.10 -3.79 4.91 -19.87 -0.10 -3.88 16 24 C -0.12 -4.13 9.32 22.27 0.21 -3.92 16 25 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 26 C -0.13 -3.43 10.05 22.27 0.22 -3.20 16 27 C -0.12 -3.66 10.05 22.27 0.22 -3.43 16 28 C -0.13 -4.88 9.67 22.27 0.22 -4.66 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.66 7.87 -2.39 -0.02 1.64 16 32 H 0.24 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 9.80 8.48 -92.70 -0.79 9.02 16 37 H 0.40 13.84 8.62 -92.71 -0.80 13.04 16 38 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 41 H 0.12 3.84 7.73 -2.91 -0.02 3.82 16 42 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 44 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 45 H 0.11 4.12 8.04 -2.91 -0.02 4.09 16 Total: -1.00 -71.99 388.92 2.88 -69.12 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.57 Total: 36.69 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.77 Total: -12.43 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.26 Total: -105.99 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.09 Total: -32.67 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -71.99 2.88 -69.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.793 kcal (2) G-P(sol) polarization free energy of solvation -71.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds